Metagenome / Metatranscriptome Family F095759

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095759
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	65 residues
Representative Sequence	MAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGPKLERATELLESMREELLVREARLQRLIFNA
Number of Associated Samples	70
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.39 %
% of genes near scaffold ends (potentially truncated)	29.52 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.238 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (19.048 % of family members)
Environment Ontology (ENVO)	Unclassified (41.905 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.33% β-sheet: 0.00% Coil/Unstructured: 16.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00313	CSD	10.48
PF01425	Amidase	4.76
PF00665	rve	1.90
PF07369	DUF1488	1.90
PF04909	Amidohydro_2	0.95
PF00355	Rieske	0.95
PF13518	HTH_28	0.95
PF06480	FtsH_ext	0.95
PF01799	Fer2_2	0.95
PF05598	DUF772	0.95
PF07519	Tannase	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	4.76
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.90
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.90
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.90
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.90
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
All Organisms	root	All Organisms	24.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
cellular organisms	root	All Organisms → cellular organisms	24.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.29 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.52 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.90 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.95 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.95 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.95 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.24 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.95 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.95 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_12943887	Not Available	577	Open in IMG/M
3300001661\|JGI12053J15887_10167157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1142	Open in IMG/M
3300002568\|C688J35102_119943488	Not Available	822	Open in IMG/M
3300004081\|Ga0063454_101186883	Not Available	630	Open in IMG/M
3300005176\|Ga0066679_10237268	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300005187\|Ga0066675_10465899	Not Available	941	Open in IMG/M
3300005332\|Ga0066388_100033364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4905	Open in IMG/M
3300005332\|Ga0066388_100151753	All Organisms → cellular organisms → Bacteria	2896	Open in IMG/M
3300005332\|Ga0066388_100282660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2302	Open in IMG/M
3300005332\|Ga0066388_100496144	Not Available	1857	Open in IMG/M
3300005332\|Ga0066388_102795728	Not Available	891	Open in IMG/M
3300005332\|Ga0066388_103473939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	804	Open in IMG/M
3300005332\|Ga0066388_105448416	Not Available	645	Open in IMG/M
3300005337\|Ga0070682_100740582	All Organisms → cellular organisms → Bacteria → Proteobacteria	792	Open in IMG/M
3300005558\|Ga0066698_10419216	Not Available	918	Open in IMG/M
3300005560\|Ga0066670_10527656	Not Available	724	Open in IMG/M
3300005713\|Ga0066905_100135967	All Organisms → cellular organisms → Bacteria	1744	Open in IMG/M
3300005713\|Ga0066905_100309948	Not Available	1244	Open in IMG/M
3300005713\|Ga0066905_100380612	Not Available	1138	Open in IMG/M
3300005713\|Ga0066905_100641582	Not Available	904	Open in IMG/M
3300005713\|Ga0066905_100715605	Not Available	861	Open in IMG/M
3300005713\|Ga0066905_101256070	Not Available	664	Open in IMG/M
3300005713\|Ga0066905_101984936	Not Available	540	Open in IMG/M
3300005764\|Ga0066903_100028629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6223	Open in IMG/M
3300005764\|Ga0066903_100173164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3163	Open in IMG/M
3300005764\|Ga0066903_103542093	Not Available	841	Open in IMG/M
3300005764\|Ga0066903_105605372	Not Available	661	Open in IMG/M
3300005937\|Ga0081455_10047438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3720	Open in IMG/M
3300005937\|Ga0081455_10292562	Not Available	1172	Open in IMG/M
3300006178\|Ga0075367_10210332	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300006794\|Ga0066658_10136679	Not Available	1221	Open in IMG/M
3300006797\|Ga0066659_11043717	Not Available	683	Open in IMG/M
3300006806\|Ga0079220_10183087	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300006854\|Ga0075425_100627499	All Organisms → cellular organisms → Bacteria → Proteobacteria	1236	Open in IMG/M
3300006854\|Ga0075425_101829151	Not Available	681	Open in IMG/M
3300006904\|Ga0075424_101258455	Not Available	787	Open in IMG/M
3300007076\|Ga0075435_100691760	Not Available	886	Open in IMG/M
3300007255\|Ga0099791_10567585	Not Available	553	Open in IMG/M
3300007788\|Ga0099795_10143251	Not Available	974	Open in IMG/M
3300009792\|Ga0126374_11022373	Not Available	650	Open in IMG/M
3300009792\|Ga0126374_11857214	Not Available	505	Open in IMG/M
3300010046\|Ga0126384_11083450	Not Available	734	Open in IMG/M
3300010047\|Ga0126382_10083439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	2007	Open in IMG/M
3300010047\|Ga0126382_10415868	Not Available	1054	Open in IMG/M
3300010047\|Ga0126382_10564984	Not Available	929	Open in IMG/M
3300010047\|Ga0126382_11369396	Not Available	644	Open in IMG/M
3300010047\|Ga0126382_11684745	Not Available	591	Open in IMG/M
3300010047\|Ga0126382_12172808	Not Available	533	Open in IMG/M
3300010360\|Ga0126372_10328462	Not Available	1360	Open in IMG/M
3300010360\|Ga0126372_12714166	Not Available	547	Open in IMG/M
3300010362\|Ga0126377_10572264	Not Available	1171	Open in IMG/M
3300010362\|Ga0126377_10912442	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300010362\|Ga0126377_10948305	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300010362\|Ga0126377_11138912	Not Available	850	Open in IMG/M
3300010362\|Ga0126377_13335502	Not Available	519	Open in IMG/M
3300010366\|Ga0126379_12951320	Not Available	569	Open in IMG/M
3300010403\|Ga0134123_10472975	Not Available	1172	Open in IMG/M
3300012200\|Ga0137382_10393528	Not Available	976	Open in IMG/M
3300012200\|Ga0137382_11338032	Not Available	504	Open in IMG/M
3300012212\|Ga0150985_103975367	Not Available	647	Open in IMG/M
3300012351\|Ga0137386_10453738	Not Available	923	Open in IMG/M
3300012357\|Ga0137384_10545649	Not Available	949	Open in IMG/M
3300012469\|Ga0150984_104008576	Not Available	606	Open in IMG/M
3300012469\|Ga0150984_105690492	Not Available	500	Open in IMG/M
3300012469\|Ga0150984_114845900	Not Available	734	Open in IMG/M
3300012469\|Ga0150984_122463131	Not Available	554	Open in IMG/M
3300012683\|Ga0137398_10043435	Not Available	2625	Open in IMG/M
3300012927\|Ga0137416_10384864	Not Available	1185	Open in IMG/M
3300012930\|Ga0137407_10651167	Not Available	991	Open in IMG/M
3300012948\|Ga0126375_10454866	Not Available	942	Open in IMG/M
3300012971\|Ga0126369_12666578	Not Available	584	Open in IMG/M
3300015264\|Ga0137403_10510760	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300015374\|Ga0132255_104990643	Not Available	562	Open in IMG/M
3300015374\|Ga0132255_106363008	Not Available	500	Open in IMG/M
3300018000\|Ga0184604_10221525	Not Available	656	Open in IMG/M
3300018028\|Ga0184608_10008282	Not Available	3465	Open in IMG/M
3300018051\|Ga0184620_10255445	Not Available	588	Open in IMG/M
3300018054\|Ga0184621_10188535	Not Available	740	Open in IMG/M
3300018066\|Ga0184617_1057594	Not Available	1004	Open in IMG/M
3300018072\|Ga0184635_10297330	Not Available	633	Open in IMG/M
3300018433\|Ga0066667_10585555	Not Available	929	Open in IMG/M
3300018482\|Ga0066669_10048353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2668	Open in IMG/M
3300020018\|Ga0193721_1051155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300020170\|Ga0179594_10185266	Not Available	777	Open in IMG/M
3300021086\|Ga0179596_10723847	Not Available	503	Open in IMG/M
3300025941\|Ga0207711_12004501	Not Available	522	Open in IMG/M
3300026300\|Ga0209027_1216353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	615	Open in IMG/M
3300026318\|Ga0209471_1133274	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300027738\|Ga0208989_10171235	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	725	Open in IMG/M
3300027775\|Ga0209177_10262995	Not Available	642	Open in IMG/M
3300027909\|Ga0209382_10450844	Not Available	1425	Open in IMG/M
3300031093\|Ga0308197_10464241	Not Available	511	Open in IMG/M
3300031099\|Ga0308181_1013078	All Organisms → cellular organisms → Bacteria → Proteobacteria	1236	Open in IMG/M
3300031184\|Ga0307499_10081499	Not Available	854	Open in IMG/M
3300031184\|Ga0307499_10235877	Not Available	578	Open in IMG/M
3300031198\|Ga0307500_10012603	Not Available	1744	Open in IMG/M
3300031226\|Ga0307497_10403180	Not Available	654	Open in IMG/M
3300031720\|Ga0307469_10200039	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300031740\|Ga0307468_100059513	Not Available	2053	Open in IMG/M
3300031820\|Ga0307473_11123070	Not Available	580	Open in IMG/M
3300032174\|Ga0307470_10033304	All Organisms → cellular organisms → Bacteria	2477	Open in IMG/M
3300032180\|Ga0307471_100294230	Not Available	1707	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.81%
Host-Associated	Host-Associated	16.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.10%
Plants	Host-Associated → Plants	16.19%
Aquatic	Environmental → Aquatic	5.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.48%
Sediment	Environmental → Aquatic → Sediment	5.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.76%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.24%
Loam	Environmental → Terrestrial → Soil → Loam	22.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.10%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.05%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.95%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.05%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.14%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.71%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.71%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.76%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.90%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.95%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_129438872	3300000443	Soil	MADTALQIAARQASDQKQAVLRQQAVVLSLKKEGGPRLDQATELLESMQEELQVREARLERLTINA*
JGI12053J15887_101671573	3300001661	Forest Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAK
C688J35102_1199434881	3300002568	Soil	MAETELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDQATELLESMREELQIREARLERLTFNA*
Ga0063454_1011868832	3300004081	Soil	MANTELQIAAQEASDQKQTVLKQQSVVLSLKREGGPRLERAAELLESMRNELTLREAHLEGLIANA*
Ga0066679_102372682	3300005176	Soil	LQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFNA*
Ga0066675_104658992	3300005187	Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIVKEGRLERLVFNA*
Ga0066388_1000333643	3300005332	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELEQATELLESMREELLVKEARLQRLIFNA*
Ga0066388_1001517533	3300005332	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLESLQEELLVKEARLQRLVFNA*
Ga0066388_1002826601	3300005332	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKSEGGPELERATELLESLQEQLLVKEARLQRLVFNA*
Ga0066388_1004961442	3300005332	Tropical Forest Soil	VAPARSVNLELRGDEADVGETELQMATREASDQKQAVLRQQAVVLGLKNEGGPKLERATELLESLRQELLAREARLARLVFNA*
Ga0066388_1027957281	3300005332	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGERLAKATELLESMQEELLIKEARLERLVLNA*
Ga0066388_1034739393	3300005332	Tropical Forest Soil	TELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLETMREELLVKEARLQRLIFNA*
Ga0066388_1054484161	3300005332	Tropical Forest Soil	MADTELQIAAREASDQKQAVLRQQAVVLGLKGEGGPKLERATELLESMRQELLVREARLQRLIFNA*
Ga0070682_1007405821	3300005337	Corn Rhizosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREAHLERLTINA*
Ga0066698_104192162	3300005558	Soil	MAETELQIAAREASDQKHAVLRQQAVVLGLKSEGGPELERATELLESMREELLAKEARLQQLIFNA*
Ga0066670_105276561	3300005560	Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLEGEGGERLAKGTELLESMQKELHVREARLERLILNA*
Ga0066905_1001359672	3300005713	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGPKLERATELLESMREELLVREARLQRLIFNA*
Ga0066905_1003099482	3300005713	Tropical Forest Soil	VNLELRGDEADVGETELQMATREASDQKQAVLRQQAVVLGLKNEGGPKLERATELLESLRQELLAREARLARLVFNA*
Ga0066905_1003806124	3300005713	Tropical Forest Soil	VGETELQMATREASDQKQAVLRQQAVVLGLKCEGGPNLERATELLESMRKELLVREARLARLVFNT*
Ga0066905_1006415821	3300005713	Tropical Forest Soil	MAETALQIAARQASDQKLAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLTFSA*
Ga0066905_1007156051	3300005713	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKSEGGPELERATELLESLQEELLVKEARLQRLVFNA*
Ga0066905_1012560703	3300005713	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLESMREELLVKE
Ga0066905_1019849362	3300005713	Tropical Forest Soil	MTARSVNLELRGDEANMGETELQTATREASDQKQAVLRQQAVVLGLKNEGGPKLESATELLESLRQELLVRESRLARLVFSA*
Ga0066903_1000286295	3300005764	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGEKLAKATELLESMQEELLVREARLERLVLNA*
Ga0066903_1001731644	3300005764	Tropical Forest Soil	MAETELQIATKEASDQKQAVLRQEAVVLGLKSEGGPELERATELLDSLREELLVREARLQRLIFNA*
Ga0066903_1035420931	3300005764	Tropical Forest Soil	MAETALQIAARQASDQKQAVLRQRAVVLGLKKEGGPRLDQATELLETMQEELQVREASLERLTINA*
Ga0066903_1056053721	3300005764	Tropical Forest Soil	MAETELQIATREASDQKQAVLRQQSVVLGLKGEGGERLAQATELLESMQEEL
Ga0081455_100474384	3300005937	Tabebuia Heterophylla Rhizosphere	MAETELQIAAREASDQKHAVLRQQAVVLGLKGEGGPKLESATELLESMREELLVREARLQRLIFNA*
Ga0081455_102925621	3300005937	Tabebuia Heterophylla Rhizosphere	MAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGPKLERATELLESMREELLVKEARLQRLIFNA*
Ga0075367_102103323	3300006178	Populus Endosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDEATELLESMQEELQVREALLERLTINA*
Ga0079222_124554572	3300006755	Agricultural Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDRATELLESMRE
Ga0066658_101366794	3300006794	Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELLIREARLERLILNA*
Ga0066659_110437171	3300006797	Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFNA*
Ga0079220_101830872	3300006806	Agricultural Soil	QIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREARLEQLTINA
Ga0075425_1006274992	3300006854	Populus Rhizosphere	MAETALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREARLEQLTINA*
Ga0075425_1018291512	3300006854	Populus Rhizosphere	MAETELQIASRHASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREARLEQLTFNA*
Ga0075424_1012584552	3300006904	Populus Rhizosphere	MAETELQIASRHASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREARLERLTFNA*
Ga0075435_1006917602	3300007076	Populus Rhizosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDEATELLESMQEELQV
Ga0099791_105675852	3300007255	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLALNA*
Ga0099795_101432512	3300007788	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPKLDKATELLESMQEELHVREARLERLTFNA*
Ga0111539_101295583	3300009094	Populus Rhizosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDEATELLESMQE
Ga0126374_110223732	3300009792	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLESLQEQLLVKEARLQRLVFNA*
Ga0126374_118572142	3300009792	Tropical Forest Soil	MAETALQIAARQASDQKLAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIRE
Ga0126384_110834502	3300010046	Tropical Forest Soil	EEALMAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGEKLAKATELLESMQEELLVREARLERLVLNA*
Ga0126382_100834393	3300010047	Tropical Forest Soil	DPAQGEGAMAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGPKLERATELLESMREELLVREARLQRLIFNA*
Ga0126382_104158682	3300010047	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGQKLERATELLESMREELLVREARLQRLIFNA*
Ga0126382_105649842	3300010047	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGEKLAKATELLESMQEEL
Ga0126382_113693961	3300010047	Tropical Forest Soil	RSVNLKLRGDEANMGETELQMATRQASDQKQAVLRQQAVVLGLKNEGGPKLERATELLESLRQELLVRESRLARLVFSA*
Ga0126382_116847452	3300010047	Tropical Forest Soil	VGETELQMATREASDQKQAVLRQQAVVLGLKCEGGPNLERATELLESMRKELVVREARLARLVFNT*
Ga0126382_121728081	3300010047	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLESMREELLVREARLQRLIFNA*
Ga0126372_103284623	3300010360	Tropical Forest Soil	PPPPVGGNTSLSEEALMAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGERLAKATELLESMQEELLIKEARLERLVLNA*
Ga0126372_127141661	3300010360	Tropical Forest Soil	GGNTSLSEEALMAETELQIAAREASDQKQAVLRQQTVVLGLKGEGGEKLAKATELLESMQEELLVREARLERLVLNA*
Ga0126377_105722641	3300010362	Tropical Forest Soil	VNLELRGDEADVGETELQMATRQASDQKQAVLRQQAVVLGLKNEGGPKLERATELLESMRKELLVREARLARLVFN
Ga0126377_109124421	3300010362	Tropical Forest Soil	EASDQKQAVLRQQAVVLGLKSEGGPELERATELLESMREELLVKEARLQRLIFNA*
Ga0126377_109483051	3300010362	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKGEGGQKLERATELLESMREELLVKEARLQRLI
Ga0126377_111389122	3300010362	Tropical Forest Soil	MEASMADTALQIAARQASDQKQAVLRQQAVVLSLKKEGGPRLDQATELLESMQEELQVREARLERLTINA*
Ga0126377_132811521	3300010362	Tropical Forest Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDRATELLESMREE
Ga0126377_133355021	3300010362	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQTVVLGLKSEGGPELERATELLESMREELLLKEARLQRLIFNA*
Ga0126379_129513202	3300010366	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELEQATELLESMREELLVKE
Ga0134123_104729751	3300010403	Terrestrial Soil	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQV
Ga0137382_103935281	3300012200	Vadose Zone Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELLVREARLERLVLNA*
Ga0137382_113380322	3300012200	Vadose Zone Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRL
Ga0150985_1039753671	3300012212	Avena Fatua Rhizosphere	MANTELQIAAQDASDQKQTVLKQQSVVLSLKGEGGPRLERAAELLESMRNELMLKEARLEGLIANA*
Ga0137386_104537382	3300012351	Vadose Zone Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELLIREARLERLVLNA*
Ga0137384_105456492	3300012357	Vadose Zone Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELHIREARLERLVLNA*
Ga0150984_1040085762	3300012469	Avena Fatua Rhizosphere	ASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREARLERLAFNA*
Ga0150984_1056904921	3300012469	Avena Fatua Rhizosphere	MAETALQTAARLASDQKQAVLRQRAVVLGLKKEGGPRLDEATELLESMQEELQVREARLERLTINA*
Ga0150984_1148459001	3300012469	Avena Fatua Rhizosphere	LQNAARDASDQKQTVLKQQSVVLSLKREGGPRLERAAALLESMRDELMLKEARLEGLIANA*
Ga0150984_1224631311	3300012469	Avena Fatua Rhizosphere	VAETELQIAAREASDQKQAVLKQQAVVLGLKREGGTRLDQATELLDSLRDELALKEARFERLVLNA*
Ga0137398_100434352	3300012683	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPKLDKATELLASMQEELHVREARLERLTFNA*
Ga0137416_103848642	3300012927	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLTFNA*
Ga0137407_106511672	3300012930	Vadose Zone Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPKLERATELLESMREELLVREARLQRLIFNA*
Ga0126375_104548662	3300012948	Tropical Forest Soil	MAETELQIAAREASDQKQAVLRQQAVVLGLKSEGGPELERATELLESMREELLVKEARLQRLIFNA*
Ga0126369_126665781	3300012971	Tropical Forest Soil	MAETEIQIATKEASDQKQAVLRQEAVVLGLKSEGGPELERATELLDSLREELLVREARLQQLIFNA*
Ga0137403_105107601	3300015264	Vadose Zone Soil	AQKESSMADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPKLDKATELLESMQEELHVREARLERLTFNA*
Ga0132255_1049906431	3300015374	Arabidopsis Rhizosphere	MAETELQIASRHASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREAR
Ga0132255_1063630081	3300015374	Arabidopsis Rhizosphere	MAETALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREAHLERLTINA*
Ga0184604_102215252	3300018000	Groundwater Sediment	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFNA
Ga0184608_100082823	3300018028	Groundwater Sediment	MADTELQIAARQASDQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLALNA
Ga0184620_102554451	3300018051	Groundwater Sediment	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELHIREARLERLTFNA
Ga0184621_101885352	3300018054	Groundwater Sediment	MADTELQIAARQASEQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLALNA
Ga0184617_10575941	3300018066	Groundwater Sediment	MADTELQIAARQASDQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQGELHIREARLERLALNA
Ga0184635_102973301	3300018072	Groundwater Sediment	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLALNA
Ga0066667_105855552	3300018433	Grasslands Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELHVREARLERLILNA
Ga0066669_100483535	3300018482	Grasslands Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIVKEGRLERLVFNA
Ga0193721_10511551	3300020018	Soil	MADTELQIATRAASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFNA
Ga0179594_101852662	3300020170	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQAVVLGLKKEGGPKLDRATELLESMQEELHIREARLERLTFNA
Ga0179596_107238471	3300021086	Vadose Zone Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPKLDKATELLESMQEELHVREARLERLTFNA
Ga0207711_120045011	3300025941	Switchgrass Rhizosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREAHLERLTINA
Ga0209027_12163531	3300026300	Grasslands Soil	YRARAAKWGRRPMADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFNA
Ga0209471_11332741	3300026318	Soil	LQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFN
Ga0208989_101712352	3300027738	Forest Soil	MAETELQIAAREASDQKQAVLRQQSVVLGLKGEGGERLAKATELLESMQEELHIRE
Ga0209177_102629951	3300027775	Agricultural Soil	MAETALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREARLEQLTINA
Ga0209382_104508443	3300027909	Populus Rhizosphere	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDEATELLESMQEELQVREALLERLTINA
Ga0308197_104642412	3300031093	Soil	MADTELQIATREASDQKQLVLRQQAVVLSLKREGGPRLERETELLESMRDELIAKEGRLERLVFDA
Ga0308181_10130784	3300031099	Soil	MADTELQIATREASDQKQLVLRQQAGVLSLKREGGPRLERETELLESMRDELIAK
Ga0307499_100814991	3300031184	Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREARLEQLTFNA
Ga0307499_102358771	3300031184	Soil	MADTALQIAARQASDQKQAVLRQQAVVLGLKKEGGPRLDQATELLETMQEELQVREARLEQLTINA
Ga0307500_100126031	3300031198	Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDRATELLESMREELQIREARL
Ga0307497_104031801	3300031226	Soil	MADTELQIAAREASDQKQLVLRQQAVVLSLKREGGARLERETELLESMRNELMLKEGRLEQLVFNA
Ga0307469_102000391	3300031720	Hardwood Forest Soil	MAETELQIAAREASDQKHAVLRQQAVVLGLKGEGGPKLERATELLESMQEELLVREARLQRLIFNA
Ga0307468_1000595133	3300031740	Hardwood Forest Soil	MADTALQIAARQASDQKQAVLRQQAVVLSLKKEGGPRLDQATELLESMQEELQVREARLERLTINA
Ga0307473_111230701	3300031820	Hardwood Forest Soil	MADTELQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELHIREARLE
Ga0307470_100333042	3300032174	Hardwood Forest Soil	MADTALQIAARQASDQKQAVLRQQSVVLSLKKEGGPRLDQATELLESMQEELQVREARLEQLTINA
Ga0307471_1002942302	3300032180	Hardwood Forest Soil	MADTALQIAARQASDQKQAVLRQQSVVLGLKKEGGPRLDKATELLESMREELQIREARLEQLTFNA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095759

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences