Basic Information | |
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Family ID | F095838 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 42 residues |
Representative Sequence | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 69.52 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 97.14 % |
Associated GOLD sequencing projects | 87 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.36 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (72.381 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.429 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.762 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (59.048 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 37.31% β-sheet: 0.00% Coil/Unstructured: 62.69% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.36 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Grass Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Soil Soil Hardwood Forest Soil Soil Tropical Peatland Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Agricultural Soil Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
FD1_00875980 | 2170459024 | Grass Soil | MPPEPVPADPGWDEDLAWLDRDPERESWLDRARERDEPPLEEEY |
JGI10216J12902_1215788831 | 3300000956 | Soil | MPNGWWYMLPEPVPADPRRDDDLAWLDRDPEREDWLNRVCE |
Ga0070683_1004536721 | 3300005329 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDE |
Ga0068868_1013163121 | 3300005338 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDPAWLDRDPERESWLDRAREHDDSPL |
Ga0070714_1021368201 | 3300005435 | Agricultural Soil | MLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEEF |
Ga0070713_1021751041 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | MLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPPGED |
Ga0070710_108493023 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | MPASPASADPGWDEDLAWLDRDPELETWLDRAREYDEPPLEEEYEDYE |
Ga0070711_1002615713 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPEPVSADPGWDEDLAWLDRDPERETWLDRAREHDAPPEPEESGGFPE |
Ga0070708_1002636571 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MWFMPPSPVPADPGRDEDLAWLDRDPEREDWLDRAREHDEPPG |
Ga0070686_1002543752 | 3300005544 | Switchgrass Rhizosphere | MPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEYE |
Ga0070665_1001458014 | 3300005548 | Switchgrass Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPLDE |
Ga0068854_1001603051 | 3300005578 | Corn Rhizosphere | MFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHDDPPLDEP |
Ga0068856_1003994171 | 3300005614 | Corn Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEE |
Ga0068852_1005215963 | 3300005616 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDP |
Ga0068866_104842201 | 3300005718 | Miscanthus Rhizosphere | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDE |
Ga0068858_1002057081 | 3300005842 | Switchgrass Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP |
Ga0070717_107453051 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDE |
Ga0070712_1013593553 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPSPVPADPGWDEDLAWLDRDPEREHWLARAREH |
Ga0074055_118713551 | 3300006573 | Soil | MLLSPVPADPGPGDLAWLDRDPERECWLDRAREHDEPPEPEE |
Ga0066659_103804952 | 3300006797 | Soil | MPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDE |
Ga0066660_103661561 | 3300006800 | Soil | MPPEPVSADPGWDEDLTWLDRDPERQTWLDRAREHDDPPEPEE |
Ga0075425_1027828862 | 3300006854 | Populus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDE |
Ga0068865_1012628682 | 3300006881 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEEY |
Ga0075424_1007454912 | 3300006904 | Populus Rhizosphere | MMPNGWWSMLPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDE |
Ga0075424_1016760902 | 3300006904 | Populus Rhizosphere | MPAEPVPADPGWDEDLAWLDRDPERETWLDRAREHD |
Ga0079219_111724252 | 3300006954 | Agricultural Soil | MPQEPVPADPGWDEDLAWLDRDPERETWLDRAREHD |
Ga0105245_126102371 | 3300009098 | Miscanthus Rhizosphere | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL |
Ga0099792_104896202 | 3300009143 | Vadose Zone Soil | MPPEPAPADPGWDEDLAWLDRDPERETWLDRAREHDDSPLEVEYADY |
Ga0075423_130130002 | 3300009162 | Populus Rhizosphere | MPPEPVPAEPGWDEDLAWLDRDPEREVWLDRALELDDPPEPEESGGFPELTPD |
Ga0105237_107110231 | 3300009545 | Corn Rhizosphere | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRARE |
Ga0105238_124491662 | 3300009551 | Corn Rhizosphere | MWFMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP |
Ga0126384_101442931 | 3300010046 | Tropical Forest Soil | MPQQPVPADPGWDDDLAWLDRDPERDCWLDRAREHDEPSGPE |
Ga0126384_112548962 | 3300010046 | Tropical Forest Soil | MPPEPVPADPGWDEDLAWLDRDPERETWRDRAREHDEPALEEEY |
Ga0126373_111927022 | 3300010048 | Tropical Forest Soil | MPQQPVPADPGPEEDLAWLDRDPEREVWLDRARDHDEPPEP |
Ga0105239_103773751 | 3300010375 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPRWTRNTRT |
Ga0134127_122074542 | 3300010399 | Terrestrial Soil | MSLPPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGDDEDYGNFE |
Ga0134122_113285002 | 3300010400 | Terrestrial Soil | MPSEPVPADPGWDEDLAWLDRDPERETWLDRAREHDE |
Ga0134121_111196232 | 3300010401 | Terrestrial Soil | MFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEYEDY |
Ga0137365_102290851 | 3300012201 | Vadose Zone Soil | MPPEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEE |
Ga0137365_108427091 | 3300012201 | Vadose Zone Soil | MPAEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEE |
Ga0137378_104812262 | 3300012210 | Vadose Zone Soil | MPPEPVPADPGWDEDLAWLDRDPERESWLDRAREH |
Ga0137371_104061062 | 3300012356 | Vadose Zone Soil | MSLPPVPAGPGWDEDLTWLDRDPEREVWLARAREHDEPP |
Ga0137385_104519552 | 3300012359 | Vadose Zone Soil | MPPEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEEY |
Ga0137385_108967191 | 3300012359 | Vadose Zone Soil | MPAEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPL |
Ga0164309_104997271 | 3300012984 | Soil | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDD |
Ga0157370_116190091 | 3300013104 | Corn Rhizosphere | MPPEPVPADPGWDDDLAWLDRDPERETWLDRAREHDDP |
Ga0157369_103539784 | 3300013105 | Corn Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREH |
Ga0157374_125739782 | 3300013296 | Miscanthus Rhizosphere | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHD |
Ga0157378_103394981 | 3300013297 | Miscanthus Rhizosphere | MFYRNHQPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL |
Ga0157378_121789772 | 3300013297 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL |
Ga0157372_118664752 | 3300013307 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPLEEEY |
Ga0157377_103814511 | 3300014745 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLTWLDGDPERETWLDRAREHDEPPL |
Ga0157376_114309122 | 3300014969 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPMTAQEREELLDR |
Ga0137412_101599303 | 3300015242 | Vadose Zone Soil | MPVSPVPADPRPDDLAWLDRDPERECWLDRAREHDEPPES |
Ga0137403_106031371 | 3300015264 | Vadose Zone Soil | MLPSPVPADPGWDEDLTWLDRDPEREDWLDRAREHDEPVVEDEEYE |
Ga0132256_1006814121 | 3300015372 | Arabidopsis Rhizosphere | MPAEPVPADPGWDENLAWLDRDPERESWLDRAREHDEPPQEE |
Ga0182035_103007271 | 3300016341 | Soil | MSSEPVPADPGWDDDLTWLDRDPATPAEREAWLDR |
Ga0187785_105357082 | 3300017947 | Tropical Peatland | MPPEPVPADSGWDDDLTWLDRDPATPAERAAWLDRVCEQD |
Ga0206353_110588411 | 3300020082 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDE |
Ga0210405_103645271 | 3300021171 | Soil | MPPSPVPADPGWDEDLAWLDRDPEREHWLARAREHDEPPGEDEE |
Ga0210384_106547361 | 3300021432 | Soil | MPPEPVPADPGWDEDLAWLDRDPVTAAGREAWLDWLCEQDDDSFDAPQ |
Ga0210410_108617791 | 3300021479 | Soil | MLPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDDGHFEP |
Ga0210409_109225871 | 3300021559 | Soil | MPPSPVPADPGWDEDLAWLDRDPEREHWLARAREHDEPPGEEEDY |
Ga0210409_116795502 | 3300021559 | Soil | MPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGE |
Ga0179589_105306422 | 3300024288 | Vadose Zone Soil | MLVMAAMPDPAGPGWGEDLAWLDRDPEREHWLDRAREHDEPGPEE |
Ga0207692_101489012 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPSPVPADPGWNEDLAWLDRDPEREDWLARAREHDDPPGED |
Ga0207692_106331732 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | MLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPP |
Ga0207642_100114011 | 3300025899 | Miscanthus Rhizosphere | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPERECWLDR |
Ga0207710_101349412 | 3300025900 | Switchgrass Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHGEPPLE |
Ga0207647_101605661 | 3300025904 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPL |
Ga0207647_108092792 | 3300025904 | Corn Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEP |
Ga0207654_108855941 | 3300025911 | Corn Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDEEY |
Ga0207662_104876232 | 3300025918 | Switchgrass Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPEREIWLDRAREHDE |
Ga0207646_106604023 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREH |
Ga0207687_101653583 | 3300025927 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHD |
Ga0207700_102018191 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHD |
Ga0207664_110916783 | 3300025929 | Agricultural Soil | MPASPASADPGWDEDLAWLDRDPERDCWLDRAREHD |
Ga0207686_103914741 | 3300025934 | Miscanthus Rhizosphere | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDSPL |
Ga0207703_123297322 | 3300026035 | Switchgrass Rhizosphere | MPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEEYADH |
Ga0207702_102880161 | 3300026078 | Corn Rhizosphere | MFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDP |
Ga0257153_10756891 | 3300026490 | Soil | MPPEPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDD |
Ga0209620_10118571 | 3300026911 | Forest Soil | MFYRNHQPNGWWYMPPEPLPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEY |
Ga0209074_100812501 | 3300027787 | Agricultural Soil | MPPEPVPADPGWDEDLAWLDRDPERETWLDRACEHDEPPDL |
Ga0209112_100333511 | 3300027817 | Forest Soil | MPPEPVPADPGWDDLAWLDRDPERETWLDRAREHDEPPLDE |
Ga0209488_102092343 | 3300027903 | Vadose Zone Soil | MPNGWWYMPPEPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDE |
Ga0137415_102639903 | 3300028536 | Vadose Zone Soil | MLPEPVSADPRWDEDLAWLDRDPERETWLARAREHDDPPEPEE |
Ga0307307_100238441 | 3300028718 | Soil | MPNGWWYMPPEPVPADPGWDEDLTWLDRDPERESWLDRAREHDE |
Ga0307280_100048841 | 3300028768 | Soil | MPPEPVPADPGWDEDLTWLDRDPERDTWLDRACEHDDP |
Ga0307282_103252072 | 3300028784 | Soil | MPPSPVPADPGWDEDLTWLDRDPERETWLNSAREHDDPPGPEESGGFPGLTPD |
Ga0307323_100804252 | 3300028787 | Soil | MPPEPVPADPGWDEDLTWLDRDPERESWLDRAREH |
Ga0307299_103937221 | 3300028793 | Soil | MLPSPVPTDPGWDEDLTWLDRDPEREEWLARAREH |
Ga0307312_105735531 | 3300028828 | Soil | MPPEPVPADPGWDEDLAWLDRDPERESWLDRASEHDEPPEPEE |
Ga0307312_109620252 | 3300028828 | Soil | MPPSPVPADPGWDEDLTWLDRDPERETWLNSAREHDDPPGPEESGGF |
Ga0307495_100641342 | 3300031199 | Soil | MPPEPVPADPGWDEDLTWLDRDPERQTWLDRAREHD |
Ga0307475_107237142 | 3300031754 | Hardwood Forest Soil | MPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDDGHFE |
Ga0318554_102254421 | 3300031765 | Soil | MSSEPVPADPGWDDDLTWLDRDPATPAEREAWLDRVCEFDEPPEPEEY |
Ga0318546_105864961 | 3300031771 | Soil | MPPEPVPADPGWDDDLTWLDRDPATPAERAEWLDRVAEADDPPEEEEY |
Ga0318548_102769472 | 3300031793 | Soil | MPPEPVPADPGWDDDLTWLDRDPATPAEREAWLDRVCEFDEPPEP |
Ga0318514_102029361 | 3300032066 | Soil | MPPEPVPADPGPDKDLAWLDRDPEREVWLDRARGHDEPPEPAEEEYED |
Ga0307472_1001268203 | 3300032205 | Hardwood Forest Soil | MPPEPVPADPGPDEDLAWLDRDPEREVWLDRARDDDEPPEP |
Ga0307472_1026061102 | 3300032205 | Hardwood Forest Soil | MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDSPLEVEYADD |
Ga0335072_109102572 | 3300032898 | Soil | MPPEPVPADPGWDEDLTWLDRDPERETWLGRAREHDEPPLEEE |
Ga0335083_109445401 | 3300032954 | Soil | MPASPASADPGPDDLAWLDRDPERDCWLDRAREHDEPPLEEEYEDH |
Ga0335076_105326972 | 3300032955 | Soil | MPPEPVPADPGRDEDLAWLDRDPEREVWLDRARDHDEPP |
Ga0335077_115757271 | 3300033158 | Soil | MPPESVSADPGWDEDLTWLDRDPEREHWLARAREHDEPPGQEEEWEDFE |
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