NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095838

Metagenome / Metatranscriptome Family F095838

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095838
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 42 residues
Representative Sequence MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP
Number of Associated Samples 95
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 69.52 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 97.14 %
Associated GOLD sequencing projects 87
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (72.381 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(11.429 % of family members)
Environment Ontology (ENVO) Unclassified
(44.762 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(59.048 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74
1FD1_00875980
2JGI10216J12902_1215788831
3Ga0070683_1004536721
4Ga0068868_1013163121
5Ga0070714_1021368201
6Ga0070713_1021751041
7Ga0070710_108493023
8Ga0070711_1002615713
9Ga0070708_1002636571
10Ga0070686_1002543752
11Ga0070665_1001458014
12Ga0068854_1001603051
13Ga0068856_1003994171
14Ga0068852_1005215963
15Ga0068866_104842201
16Ga0068858_1002057081
17Ga0070717_107453051
18Ga0070712_1013593553
19Ga0074055_118713551
20Ga0066659_103804952
21Ga0066660_103661561
22Ga0075425_1027828862
23Ga0068865_1012628682
24Ga0075424_1007454912
25Ga0075424_1016760902
26Ga0079219_111724252
27Ga0105245_126102371
28Ga0099792_104896202
29Ga0075423_130130002
30Ga0105237_107110231
31Ga0105238_124491662
32Ga0126384_101442931
33Ga0126384_112548962
34Ga0126373_111927022
35Ga0105239_103773751
36Ga0134127_122074542
37Ga0134122_113285002
38Ga0134121_111196232
39Ga0137365_102290851
40Ga0137365_108427091
41Ga0137378_104812262
42Ga0137371_104061062
43Ga0137385_104519552
44Ga0137385_108967191
45Ga0164309_104997271
46Ga0157370_116190091
47Ga0157369_103539784
48Ga0157374_125739782
49Ga0157378_103394981
50Ga0157378_121789772
51Ga0157372_118664752
52Ga0157377_103814511
53Ga0157376_114309122
54Ga0137412_101599303
55Ga0137403_106031371
56Ga0132256_1006814121
57Ga0182035_103007271
58Ga0187785_105357082
59Ga0206353_110588411
60Ga0210405_103645271
61Ga0210384_106547361
62Ga0210410_108617791
63Ga0210409_109225871
64Ga0210409_116795502
65Ga0179589_105306422
66Ga0207692_101489012
67Ga0207692_106331732
68Ga0207642_100114011
69Ga0207710_101349412
70Ga0207647_101605661
71Ga0207647_108092792
72Ga0207654_108855941
73Ga0207662_104876232
74Ga0207646_106604023
75Ga0207687_101653583
76Ga0207700_102018191
77Ga0207664_110916783
78Ga0207686_103914741
79Ga0207703_123297322
80Ga0207702_102880161
81Ga0257153_10756891
82Ga0209620_10118571
83Ga0209074_100812501
84Ga0209112_100333511
85Ga0209488_102092343
86Ga0137415_102639903
87Ga0307307_100238441
88Ga0307280_100048841
89Ga0307282_103252072
90Ga0307323_100804252
91Ga0307299_103937221
92Ga0307312_105735531
93Ga0307312_109620252
94Ga0307495_100641342
95Ga0307475_107237142
96Ga0318554_102254421
97Ga0318546_105864961
98Ga0318548_102769472
99Ga0318514_102029361
100Ga0307472_1001268203
101Ga0307472_1026061102
102Ga0335072_109102572
103Ga0335083_109445401
104Ga0335076_105326972
105Ga0335077_115757271
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 37.31%    β-sheet: 0.00%    Coil/Unstructured: 62.69%
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Variant

5101520253035MPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
72.4%27.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grass Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Agricultural Soil
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
8.6%11.4%2.9%2.9%2.9%9.5%2.9%3.8%9.5%5.7%3.8%3.8%2.9%3.8%2.9%4.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FD1_008759802170459024Grass SoilMPPEPVPADPGWDEDLAWLDRDPERESWLDRARERDEPPLEEEY
JGI10216J12902_12157888313300000956SoilMPNGWWYMLPEPVPADPRRDDDLAWLDRDPEREDWLNRVCE
Ga0070683_10045367213300005329Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDE
Ga0068868_10131631213300005338Miscanthus RhizosphereMPPEPVPADPGWDEDPAWLDRDPERESWLDRAREHDDSPL
Ga0070714_10213682013300005435Agricultural SoilMLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEEF
Ga0070713_10217510413300005436Corn, Switchgrass And Miscanthus RhizosphereMLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPPGED
Ga0070710_1084930233300005437Corn, Switchgrass And Miscanthus RhizosphereMPASPASADPGWDEDLAWLDRDPELETWLDRAREYDEPPLEEEYEDYE
Ga0070711_10026157133300005439Corn, Switchgrass And Miscanthus RhizosphereMPPEPVSADPGWDEDLAWLDRDPERETWLDRAREHDAPPEPEESGGFPE
Ga0070708_10026365713300005445Corn, Switchgrass And Miscanthus RhizosphereMWFMPPSPVPADPGRDEDLAWLDRDPEREDWLDRAREHDEPPG
Ga0070686_10025437523300005544Switchgrass RhizosphereMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEYE
Ga0070665_10014580143300005548Switchgrass RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPLDE
Ga0068854_10016030513300005578Corn RhizosphereMFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHDDPPLDEP
Ga0068856_10039941713300005614Corn RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEE
Ga0068852_10052159633300005616Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDP
Ga0068866_1048422013300005718Miscanthus RhizosphereMPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDE
Ga0068858_10020570813300005842Switchgrass RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP
Ga0070717_1074530513300006028Corn, Switchgrass And Miscanthus RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDE
Ga0070712_10135935533300006175Corn, Switchgrass And Miscanthus RhizosphereMPPSPVPADPGWDEDLAWLDRDPEREHWLARAREH
Ga0074055_1187135513300006573SoilMLLSPVPADPGPGDLAWLDRDPERECWLDRAREHDEPPEPEE
Ga0066659_1038049523300006797SoilMPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDE
Ga0066660_1036615613300006800SoilMPPEPVSADPGWDEDLTWLDRDPERQTWLDRAREHDDPPEPEE
Ga0075425_10278288623300006854Populus RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDE
Ga0068865_10126286823300006881Miscanthus RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEEY
Ga0075424_10074549123300006904Populus RhizosphereMMPNGWWSMLPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDE
Ga0075424_10167609023300006904Populus RhizosphereMPAEPVPADPGWDEDLAWLDRDPERETWLDRAREHD
Ga0079219_1117242523300006954Agricultural SoilMPQEPVPADPGWDEDLAWLDRDPERETWLDRAREHD
Ga0105245_1261023713300009098Miscanthus RhizosphereMPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL
Ga0099792_1048962023300009143Vadose Zone SoilMPPEPAPADPGWDEDLAWLDRDPERETWLDRAREHDDSPLEVEYADY
Ga0075423_1301300023300009162Populus RhizosphereMPPEPVPAEPGWDEDLAWLDRDPEREVWLDRALELDDPPEPEESGGFPELTPD
Ga0105237_1071102313300009545Corn RhizosphereMPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRARE
Ga0105238_1244916623300009551Corn RhizosphereMWFMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPP
Ga0126384_1014429313300010046Tropical Forest SoilMPQQPVPADPGWDDDLAWLDRDPERDCWLDRAREHDEPSGPE
Ga0126384_1125489623300010046Tropical Forest SoilMPPEPVPADPGWDEDLAWLDRDPERETWRDRAREHDEPALEEEY
Ga0126373_1119270223300010048Tropical Forest SoilMPQQPVPADPGPEEDLAWLDRDPEREVWLDRARDHDEPPEP
Ga0105239_1037737513300010375Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPRWTRNTRT
Ga0134127_1220745423300010399Terrestrial SoilMSLPPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGDDEDYGNFE
Ga0134122_1132850023300010400Terrestrial SoilMPSEPVPADPGWDEDLAWLDRDPERETWLDRAREHDE
Ga0134121_1111962323300010401Terrestrial SoilMFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEYEDY
Ga0137365_1022908513300012201Vadose Zone SoilMPPEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEE
Ga0137365_1084270913300012201Vadose Zone SoilMPAEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEE
Ga0137378_1048122623300012210Vadose Zone SoilMPPEPVPADPGWDEDLAWLDRDPERESWLDRAREH
Ga0137371_1040610623300012356Vadose Zone SoilMSLPPVPAGPGWDEDLTWLDRDPEREVWLARAREHDEPP
Ga0137385_1045195523300012359Vadose Zone SoilMPPEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPLEEEY
Ga0137385_1089671913300012359Vadose Zone SoilMPAEPVPADPGWDEDLAWLDRDPERESWLDRAREHDEPPL
Ga0164309_1049972713300012984SoilMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDD
Ga0157370_1161900913300013104Corn RhizosphereMPPEPVPADPGWDDDLAWLDRDPERETWLDRAREHDDP
Ga0157369_1035397843300013105Corn RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREH
Ga0157374_1257397823300013296Miscanthus RhizosphereMPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHD
Ga0157378_1033949813300013297Miscanthus RhizosphereMFYRNHQPNGWWYMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL
Ga0157378_1217897723300013297Miscanthus RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPL
Ga0157372_1186647523300013307Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPLEEEY
Ga0157377_1038145113300014745Miscanthus RhizosphereMPPEPVPADPGWDEDLTWLDGDPERETWLDRAREHDEPPL
Ga0157376_1143091223300014969Miscanthus RhizosphereMPPEPVPADPGWDEDLAWLDRDPMTAQEREELLDR
Ga0137412_1015993033300015242Vadose Zone SoilMPVSPVPADPRPDDLAWLDRDPERECWLDRAREHDEPPES
Ga0137403_1060313713300015264Vadose Zone SoilMLPSPVPADPGWDEDLTWLDRDPEREDWLDRAREHDEPVVEDEEYE
Ga0132256_10068141213300015372Arabidopsis RhizosphereMPAEPVPADPGWDENLAWLDRDPERESWLDRAREHDEPPQEE
Ga0182035_1030072713300016341SoilMSSEPVPADPGWDDDLTWLDRDPATPAEREAWLDR
Ga0187785_1053570823300017947Tropical PeatlandMPPEPVPADSGWDDDLTWLDRDPATPAERAAWLDRVCEQD
Ga0206353_1105884113300020082Corn, Switchgrass And Miscanthus RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDE
Ga0210405_1036452713300021171SoilMPPSPVPADPGWDEDLAWLDRDPEREHWLARAREHDEPPGEDEE
Ga0210384_1065473613300021432SoilMPPEPVPADPGWDEDLAWLDRDPVTAAGREAWLDWLCEQDDDSFDAPQ
Ga0210410_1086177913300021479SoilMLPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDDGHFEP
Ga0210409_1092258713300021559SoilMPPSPVPADPGWDEDLAWLDRDPEREHWLARAREHDEPPGEEEDY
Ga0210409_1167955023300021559SoilMPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGE
Ga0179589_1053064223300024288Vadose Zone SoilMLVMAAMPDPAGPGWGEDLAWLDRDPEREHWLDRAREHDEPGPEE
Ga0207692_1014890123300025898Corn, Switchgrass And Miscanthus RhizosphereMPPSPVPADPGWNEDLAWLDRDPEREDWLARAREHDDPPGED
Ga0207692_1063317323300025898Corn, Switchgrass And Miscanthus RhizosphereMLPSPVPADAGWDEDLAWLDRDPEREVWLARAREHDEPP
Ga0207642_1001140113300025899Miscanthus RhizosphereMPNGWWYMPPEPVPADPGWDEDLAWLDRDPERECWLDR
Ga0207710_1013494123300025900Switchgrass RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHGEPPLE
Ga0207647_1016056613300025904Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDPPL
Ga0207647_1080927923300025904Corn RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEP
Ga0207654_1088559413300025911Corn RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDEPPLDEEY
Ga0207662_1048762323300025918Switchgrass RhizosphereMPPEPVPADPGWDEDLAWLDRDPEREIWLDRAREHDE
Ga0207646_1066040233300025922Corn, Switchgrass And Miscanthus RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREH
Ga0207687_1016535833300025927Miscanthus RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHD
Ga0207700_1020181913300025928Corn, Switchgrass And Miscanthus RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHD
Ga0207664_1109167833300025929Agricultural SoilMPASPASADPGWDEDLAWLDRDPERDCWLDRAREHD
Ga0207686_1039147413300025934Miscanthus RhizosphereMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDSPL
Ga0207703_1232973223300026035Switchgrass RhizosphereMPPEPVPADPGWDEDLTWLDRDPERETWLDRAREHDEPPLDEEYADH
Ga0207702_1028801613300026078Corn RhizosphereMFYRNHQPNGWWYMPPEPVPADPGWDGDLAWLDRDPERETWLDRAREHEDP
Ga0257153_107568913300026490SoilMPPEPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDD
Ga0209620_101185713300026911Forest SoilMFYRNHQPNGWWYMPPEPLPADPGWDGDLAWLDRDPERETWLDRAREHEDPPLEEEY
Ga0209074_1008125013300027787Agricultural SoilMPPEPVPADPGWDEDLAWLDRDPERETWLDRACEHDEPPDL
Ga0209112_1003335113300027817Forest SoilMPPEPVPADPGWDDLAWLDRDPERETWLDRAREHDEPPLDE
Ga0209488_1020923433300027903Vadose Zone SoilMPNGWWYMPPEPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDE
Ga0137415_1026399033300028536Vadose Zone SoilMLPEPVSADPRWDEDLAWLDRDPERETWLARAREHDDPPEPEE
Ga0307307_1002384413300028718SoilMPNGWWYMPPEPVPADPGWDEDLTWLDRDPERESWLDRAREHDE
Ga0307280_1000488413300028768SoilMPPEPVPADPGWDEDLTWLDRDPERDTWLDRACEHDDP
Ga0307282_1032520723300028784SoilMPPSPVPADPGWDEDLTWLDRDPERETWLNSAREHDDPPGPEESGGFPGLTPD
Ga0307323_1008042523300028787SoilMPPEPVPADPGWDEDLTWLDRDPERESWLDRAREH
Ga0307299_1039372213300028793SoilMLPSPVPTDPGWDEDLTWLDRDPEREEWLARAREH
Ga0307312_1057355313300028828SoilMPPEPVPADPGWDEDLAWLDRDPERESWLDRASEHDEPPEPEE
Ga0307312_1096202523300028828SoilMPPSPVPADPGWDEDLTWLDRDPERETWLNSAREHDDPPGPEESGGF
Ga0307495_1006413423300031199SoilMPPEPVPADPGWDEDLTWLDRDPERQTWLDRAREHD
Ga0307475_1072371423300031754Hardwood Forest SoilMPPSPVPADPGWDEDLAWLDRDPEREVWLARAREHDEPPGEDEDDGHFE
Ga0318554_1022544213300031765SoilMSSEPVPADPGWDDDLTWLDRDPATPAEREAWLDRVCEFDEPPEPEEY
Ga0318546_1058649613300031771SoilMPPEPVPADPGWDDDLTWLDRDPATPAERAEWLDRVAEADDPPEEEEY
Ga0318548_1027694723300031793SoilMPPEPVPADPGWDDDLTWLDRDPATPAEREAWLDRVCEFDEPPEP
Ga0318514_1020293613300032066SoilMPPEPVPADPGPDKDLAWLDRDPEREVWLDRARGHDEPPEPAEEEYED
Ga0307472_10012682033300032205Hardwood Forest SoilMPPEPVPADPGPDEDLAWLDRDPEREVWLDRARDDDEPPEP
Ga0307472_10260611023300032205Hardwood Forest SoilMPPEPVPADPGWDEDLAWLDRDPERETWLDRAREHDDSPLEVEYADD
Ga0335072_1091025723300032898SoilMPPEPVPADPGWDEDLTWLDRDPERETWLGRAREHDEPPLEEE
Ga0335083_1094454013300032954SoilMPASPASADPGPDDLAWLDRDPERDCWLDRAREHDEPPLEEEYEDH
Ga0335076_1053269723300032955SoilMPPEPVPADPGRDEDLAWLDRDPEREVWLDRARDHDEPP
Ga0335077_1157572713300033158SoilMPPESVSADPGWDEDLTWLDRDPEREHWLARAREHDEPPGQEEEWEDFE


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