Basic Information | |
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Family ID | F095878 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 56 residues |
Representative Sequence | MEATSKGWSERRNVIGHVLKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCPVDA |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 79.05 % |
% of genes near scaffold ends (potentially truncated) | 23.81 % |
% of genes from short scaffolds (< 2000 bps) | 62.86 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.23 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (48.571 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (24.762 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.238 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (38.095 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.82% β-sheet: 15.66% Coil/Unstructured: 79.52% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.23 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 105 Family Scaffolds |
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PF00078 | RVT_1 | 35.24 |
PF01527 | HTH_Tnp_1 | 1.90 |
PF10417 | 1-cysPrx_C | 1.90 |
PF03795 | YCII | 0.95 |
PF09391 | DUF2000 | 0.95 |
PF12680 | SnoaL_2 | 0.95 |
PF01035 | DNA_binding_1 | 0.95 |
PF05275 | CopB | 0.95 |
PF11154 | DUF2934 | 0.95 |
PF08388 | GIIM | 0.95 |
PF01850 | PIN | 0.95 |
PF03577 | Peptidase_C69 | 0.95 |
PF13358 | DDE_3 | 0.95 |
PF01613 | Flavin_Reduct | 0.95 |
PF01252 | Peptidase_A8 | 0.95 |
PF12840 | HTH_20 | 0.95 |
PF03008 | DUF234 | 0.95 |
PF13417 | GST_N_3 | 0.95 |
PF08241 | Methyltransf_11 | 0.95 |
PF01977 | UbiD | 0.95 |
PF07690 | MFS_1 | 0.95 |
PF13007 | LZ_Tnp_IS66 | 0.95 |
PF03928 | HbpS-like | 0.95 |
PF03625 | DUF302 | 0.95 |
PF03200 | Glyco_hydro_63 | 0.95 |
PF03061 | 4HBT | 0.95 |
COG ID | Name | Functional Category | % Frequency in 105 Family Scaffolds |
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COG0597 | Lipoprotein signal peptidase | Cell wall/membrane/envelope biogenesis [M] | 1.90 |
COG0043 | 3-polyprenyl-4-hydroxybenzoate decarboxylase | Coenzyme transport and metabolism [H] | 0.95 |
COG0350 | DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase) | Replication, recombination and repair [L] | 0.95 |
COG1672 | Predicted ATPase, archaeal AAA+ ATPase superfamily | General function prediction only [R] | 0.95 |
COG1853 | FMN reductase RutF, DIM6/NTAB family | Energy production and conversion [C] | 0.95 |
COG2350 | YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis | Secondary metabolites biosynthesis, transport and catabolism [Q] | 0.95 |
COG3439 | Uncharacterized conserved protein, DUF302 family | Function unknown [S] | 0.95 |
COG3667 | Uncharacterized conserved protein involved in copper resistance | Inorganic ion transport and metabolism [P] | 0.95 |
COG3695 | Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain | Transcription [K] | 0.95 |
COG4690 | Dipeptidase | Amino acid transport and metabolism [E] | 0.95 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 48.57 % |
All Organisms | root | All Organisms | 46.67 % |
Polyangium | genus | Polyangium | 4.76 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 24.76% |
Aquifer | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer | 10.48% |
Groundwater | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater | 8.57% |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 4.76% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 3.81% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.81% |
Sediment | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment | 2.86% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.86% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.86% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 2.86% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.86% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 2.86% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 1.90% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 1.90% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 1.90% |
Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 1.90% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment | 0.95% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 0.95% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 0.95% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.95% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.95% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 0.95% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.95% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 0.95% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.95% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.95% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.95% |
Bio-Ooze | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze | 0.95% |
Weathered Mine Tailings | Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings | 0.95% |
Quercus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Quercus Rhizosphere | 0.95% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.95% |
Ectomycorrhiza | Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza | 0.95% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.95% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.95% |
Host-Associated | Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated | 0.95% |
Wastewater | Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater | 0.95% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000546 | Quercus rhizosphere microbial communities from Sierra Nevada National Park, Granada, Spain - LJN_Illumina_Assembled | Host-Associated | Open in IMG/M |
3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
3300003368 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 | Environmental | Open in IMG/M |
3300003830 | Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter | Environmental | Open in IMG/M |
3300004212 | Groundwater microbial communities from aquifer - Crystal Geyser CG02_land_8/20/14_3.00 | Environmental | Open in IMG/M |
3300004214 | Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 | Environmental | Open in IMG/M |
3300005002 | Wastewater microbial communities from Nanji, Korea with extracellular vesicles - Nanji-0.2um | Engineered | Open in IMG/M |
3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Host-Associated | Open in IMG/M |
3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Host-Associated | Open in IMG/M |
3300005531 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 | Environmental | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Host-Associated | Open in IMG/M |
3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
3300006041 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 | Environmental | Open in IMG/M |
3300006050 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014 | Environmental | Open in IMG/M |
3300006174 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014 | Environmental | Open in IMG/M |
3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Host-Associated | Open in IMG/M |
3300007258 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 | Environmental | Open in IMG/M |
3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
3300007964 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-24 | Environmental | Open in IMG/M |
3300007988 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-0102 | Environmental | Open in IMG/M |
3300008001 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-13 | Environmental | Open in IMG/M |
3300008004 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-19 | Environmental | Open in IMG/M |
3300008086 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-12 | Environmental | Open in IMG/M |
3300008094 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-11 | Environmental | Open in IMG/M |
3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
3300009053 | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015 | Environmental | Open in IMG/M |
3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Host-Associated | Open in IMG/M |
3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
3300009635 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 | Environmental | Open in IMG/M |
3300009787 | Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG | Host-Associated | Open in IMG/M |
3300010048 | Tropical forest soil microbial communities from Panama - MetaG Plot_11 | Environmental | Open in IMG/M |
3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
3300012203 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG | Environmental | Open in IMG/M |
3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
3300012206 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG | Environmental | Open in IMG/M |
3300012207 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG | Environmental | Open in IMG/M |
3300012209 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG | Environmental | Open in IMG/M |
3300012359 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012917 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG | Environmental | Open in IMG/M |
3300012927 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012982 | Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCWfield | Environmental | Open in IMG/M |
3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
3300015242 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300015370 | Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG | Environmental | Open in IMG/M |
3300019268 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300019458 | Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG | Environmental | Open in IMG/M |
3300020199 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300021086 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
3300024288 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal | Environmental | Open in IMG/M |
3300025008 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-21 (SPAdes) | Environmental | Open in IMG/M |
3300025017 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-20 (SPAdes) | Environmental | Open in IMG/M |
3300025020 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-23 (SPAdes) | Environmental | Open in IMG/M |
3300025031 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-25 (SPAdes) | Environmental | Open in IMG/M |
3300025036 | Groundwater microbial communities from aquifer - Crystal Geyser CG06_land_8/20/14_3.00 (SPAdes) | Environmental | Open in IMG/M |
3300025288 | Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes) | Environmental | Open in IMG/M |
3300025314 | Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 2 | Environmental | Open in IMG/M |
3300025787 | Groundwater microbial communities from aquifer - Crystal Geyser CG01_land_8/20/14_3.00 (SPAdes) | Environmental | Open in IMG/M |
3300025831 | Groundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-22 (SPAdes) | Environmental | Open in IMG/M |
3300025835 | Groundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes) | Environmental | Open in IMG/M |
3300026530 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes) | Environmental | Open in IMG/M |
3300027645 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
3300027855 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes) | Environmental | Open in IMG/M |
3300027965 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes) | Environmental | Open in IMG/M |
3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
3300030399 | II_Palsa_E2 coassembly | Environmental | Open in IMG/M |
3300030906 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3 | Environmental | Open in IMG/M |
3300031028 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2 | Environmental | Open in IMG/M |
3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031236 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1 | Environmental | Open in IMG/M |
3300031730 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM | Host-Associated | Open in IMG/M |
3300031753 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515 | Environmental | Open in IMG/M |
3300032053 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16 | Environmental | Open in IMG/M |
3300032076 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2) | Environmental | Open in IMG/M |
3300032163 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0 | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300032397 | Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LJNas_10034352 | 3300000546 | Quercus Rhizosphere | MEATSEGWSERRNVVGHVLKFGLLIQRVRIPPGQSVDPRVGSEPCSGTGNCPVDA* |
JGI12635J15846_104701423 | 3300001593 | Forest Soil | MVKKQQMEATSKGWSEGRNVIGYVLKFGLLVQRVRSPSGQSVDPQAGSEPCSGTGNCSVDA* |
JGI12635J15846_105290003 | 3300001593 | Forest Soil | RWWMEATSEGWSERRNVVGHVLKFGLLIQRVQIPSGQSVDPQAGSEPCSGTGNCPVDA* |
JGIcombinedJ26739_1011854163 | 3300002245 | Forest Soil | MEATSKGWSEGRNVVGHVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA* |
JGI26341J46601_101893892 | 3300003219 | Bog Forest Soil | MEATSEGWSERRNVVGHVLKFGLLIQRVQIPPGQSVDPQAGSEPCSGTGNCPVDA* |
JGI26340J50214_101717212 | 3300003368 | Bog Forest Soil | LADLVNLGVPMEATSEGWSERRNVVGHVLKFGLLIQRVQIPPGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0051980_101228272 | 3300003830 | Groundwater | AMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0066631_104303961 | 3300004212 | Groundwater | MEVTRKGWSGRKEVVGDFLKFGVPVQRVRIPPDQSPDRQVGSEPCDGVGNHDGDT* |
Ga0066646_102905581 | 3300004214 | Groundwater | EVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0068518_10611281 | 3300005002 | Wastewater | MEVTRKGWTGRRDEIGSVPKFGEPAQRVQSPPGQSEDPQAGSEPCDGAGNRGGDT* |
Ga0066688_108070882 | 3300005178 | Soil | MEVTRKGWSEGEGRVGTVPKFGISVQRVRIPSGQSEDPRAGSEPCDDVGNHGGDT* |
Ga0070666_103662092 | 3300005335 | Switchgrass Rhizosphere | MEATSKGWSERRNVIGHVLKFGVLIQRVRIPPGQSVDPQVGSEPCSGSGNCSVDE* |
Ga0070671_1010428812 | 3300005355 | Switchgrass Rhizosphere | MEATSEGRSERTNVFGHVLKFGLLIQRVQIPSGQSVDPQTGSEPCSGTGNCPVDA* |
Ga0070738_100531404 | 3300005531 | Surface Soil | MEATRQGWSERTDVIGHVRKFGVSVQRVRIPPGQSADPQAGSKPCDAGGDLGGDA* |
Ga0070684_1001155204 | 3300005535 | Corn Rhizosphere | MEATSNDWSEGMNVVGHVLKFGLLIQRVRIPPCQRADPQVGSEPCSGTGNCPVDA* |
Ga0070665_1024346032 | 3300005548 | Switchgrass Rhizosphere | MEATSKDWSGGRNVIGHVPKFGVLIQRVRIPPDQSVDPQVGNKPCDGVGEPRRRCVGM* |
Ga0066705_100508384 | 3300005569 | Soil | MEATSKGWSERRNVDGHVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0068862_1013091321 | 3300005844 | Switchgrass Rhizosphere | VEATRKGWSEGKDVIGNVLKFGVSVQRVRIPSGQSVDPQVGNKPCDGVGNHDGDA* |
Ga0070766_105398252 | 3300005921 | Soil | MEATSKGWSEGRSVIGHVLKFGVLIQRVRIPSGQSVDPQAGSEPCSGAGNCSVDA* |
Ga0075023_1004440212 | 3300006041 | Watersheds | MEATSKGWSERRNVIGYVLKFGLLIQRVRIPSGQSVDPRAGSEPCSGTGNCPVDA* |
Ga0075028_1000251812 | 3300006050 | Watersheds | MEATSKGWSERRNVDGHVLKFGLLIQRVRIPSGQSVDPQAGSEPCSRTGNCPVDA* |
Ga0075014_1010264861 | 3300006174 | Watersheds | MEATSKGWSERRNVIGHVLKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0097621_1009776901 | 3300006237 | Miscanthus Rhizosphere | MEATSKGWSRGRGVIGHVLKSGVPIQRVRIPLGQSVDPQAGSEPCSWTGNC |
Ga0068871_1006535712 | 3300006358 | Miscanthus Rhizosphere | MEATSKGWSRGRGVIGHVLKSGVPIQRVRIPLGQSVDPQAGSEPCSWTGNCSVDA* |
Ga0099793_101721133 | 3300007258 | Vadose Zone Soil | MEATSEGWSERRSVVGHGLKFGLLIQRVRIPPGQSVDPQVGSEPCSGTGNCPVDA* |
Ga0099794_100849253 | 3300007265 | Vadose Zone Soil | MEATSKGWSEGRNVIGDVLKFGLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0100400_10438163 | 3300007964 | Aquifer | MEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0100402_10645411 | 3300007988 | Aquifer | ERALRRVIAAKLMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0100389_12280291 | 3300008001 | Aquifer | MEVTRKGWSGRKEVVGDFLKFGVPVQRVRIPPGQSEDPQAGSEPCDGVSNHDGDT* |
Ga0100395_12998021 | 3300008004 | Aquifer | RKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0100388_101672122 | 3300008086 | Aquifer | MEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCYGVGNHDGDT* |
Ga0100387_101268271 | 3300008094 | Aquifer | LMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT* |
Ga0099829_100735324 | 3300009038 | Vadose Zone Soil | MEATSEGWSEGRNVIGDVLKFGLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0099829_104954992 | 3300009038 | Vadose Zone Soil | MEATRKGWSEGKDVIGHVLKFGVSVQRVRNPSGQSADPQAGNKPCDGVGNHDGDA* |
Ga0105095_102024783 | 3300009053 | Freshwater Sediment | MEVTRKGWSERKEVVGDLLKFGVPVQRVRTPPGQSEDPQAGSEPCDGHGDGTVDA* |
Ga0105241_104856863 | 3300009174 | Corn Rhizosphere | MEATSEGWSEGRNVIGHVLKFGVLIQRVRIPPGQSVDPQAGSEPCSGTGNCSVDA* |
Ga0105238_113371673 | 3300009551 | Corn Rhizosphere | MEATRKGWSEGKGVIGHVLKFGLLIQRVRIPLGQSVDPQADNKPRDGVGNHYGDA* |
Ga0116117_10145195 | 3300009635 | Peatland | MEATSKGWSRGRNVIGNVLKSGLLIQRVRIPPGQSVDPQAGSEPCSVTGNCCVDA* |
Ga0116226_101065804 | 3300009787 | Host-Associated | MEATSKGWFKRRNVDGHILKFGLLIQRVRIPPGQSVDPQAGSEPCSGAGNCSVDA* |
Ga0126373_101489523 | 3300010048 | Tropical Forest Soil | MEATRKGWSERKDVIGHVRKFGVSVQRVRIPPGQSADPQAGSKPCDAEGDLGADA* |
Ga0074044_108066591 | 3300010343 | Bog Forest Soil | MEATSKGWSERRNVIGHVPKFGLLIQRVRIPSGQSVDPQTGSEPCSGTGDCLVDG* |
Ga0134128_100611814 | 3300010373 | Terrestrial Soil | MEVTSKGWSERKDVIGHVWKFGVPVQRVRIPPGQSADPQAGSKPCDGGGDPGGDT* |
Ga0105239_124225062 | 3300010375 | Corn Rhizosphere | MEATSEGWSERTNVFGHVLKFGLLIQRVQIPSGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0137392_102152402 | 3300011269 | Vadose Zone Soil | MEATSKGWSERRNVIGYVLKFGLLIQRVRIPSGQSVDPRAGSEPCSGTGNCSVDA* |
Ga0137364_102582922 | 3300012198 | Vadose Zone Soil | MEVTRKGWSERKDVIGNVLKFGVSVQRVRIPPGQSEDPQAGSKPCDDGGNPDGDT* |
Ga0137399_104236212 | 3300012203 | Vadose Zone Soil | MEATRKGWSERKDVIGHVLKFGVSVQRVRNPPGQSADPQAGNKPCDGVGNHDGDA* |
Ga0137362_109486232 | 3300012205 | Vadose Zone Soil | MEATRQGWSEGMNVIGNVLKFGVSVQRVRIPPDQSVDPQVGNKPCDGVGNHDGDA* |
Ga0137380_111074361 | 3300012206 | Vadose Zone Soil | KIGFAMEATREGWSEGMNVIGNVLKFGVSVQRVRIPSGQSVDPQAGNKPCDGVGNHDGDA |
Ga0137381_101275443 | 3300012207 | Vadose Zone Soil | LWSAERCDFKGTTMEATRQGWSEGMNVIGNVLKFGVSVQRVRIPSGQSVDPQAGNKPCDGVGNHDGDA* |
Ga0137379_108592892 | 3300012209 | Vadose Zone Soil | MEATRQGWSEGMNVIGNVLKFGVSVQRVRIPSGQSVDPQAGNKPCDGVGNHDGDA* |
Ga0137385_107753822 | 3300012359 | Vadose Zone Soil | MEATSKGWSERRNVIGHVPKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCSVDA* |
Ga0137361_118020382 | 3300012362 | Vadose Zone Soil | MEATSKGWSEGRNVIGDVLKFGLLVQRVRISSGQSVDPQAGSEPCSGTGNCPVDA* |
Ga0150984_1138366071 | 3300012469 | Avena Fatua Rhizosphere | MEATSNDWSEGMSVVGHVLKFGLLIQRVKIPSGQSVDPQAGSEPCSGTSNCPVDA* |
Ga0137397_103614852 | 3300012685 | Vadose Zone Soil | MEATRQGWSEGMNVIGNVLKFGVSVQRVRIPCGQSVDPQAGNKPCDGVGNHDGDA* |
Ga0137395_100777242 | 3300012917 | Vadose Zone Soil | MEATRKGWSEGRNVIGHVLKFGVSVQRVRIPPGQSEDPQAGNKPCDGVGEPRRRCVGM* |
Ga0137395_107317642 | 3300012917 | Vadose Zone Soil | MEATRKGWSEGRNVVGHVLKFGVSVQRVRIPPGQSEDPQAGNKPC |
Ga0137416_100155533 | 3300012927 | Vadose Zone Soil | MEATRKGWSERKDVIRHVLKFGVSVQRVRIPSGQSVDPQTGNKPCDGVGNHDGDA* |
Ga0137416_103468311 | 3300012927 | Vadose Zone Soil | MEATRKGWSEGMNVIGNVLKFGVSVQRVRIPPDQSVDPQVGNKPCDGVGNHDGDA* |
Ga0137410_100964043 | 3300012944 | Vadose Zone Soil | ATRQGWSEGMNVIGNVLKFGVSVQRVRIPCGQSVDPQAGNKPCDGVGNHDGDA* |
Ga0168317_10097222 | 3300012982 | Weathered Mine Tailings | VRSLTSDERLEVRNMEATSEGWSERMNVIGHVLKFGLLVQRVRIPPGQSVDPQAGSEPCGGTGNCPVDA* |
Ga0182024_104155964 | 3300014501 | Permafrost | MEATSKGWFKRRNVDGHILKFGLLIQRVRIPPGQSVDPQAGSEPCSGAGNCFV |
Ga0157379_101390344 | 3300014968 | Switchgrass Rhizosphere | MEATRQVWSERKNVIGNVLKFGLSVQRVRNPPGQSVDAQAGNKPCDGVGEPRRRCVGM* |
Ga0137412_102680412 | 3300015242 | Vadose Zone Soil | MEVTRKGWSERKDVIGHVLKFGVSVQRVRIPPGQSADPQAGNKPCDDVGQPRRRCVGV* |
Ga0180009_102893581 | 3300015370 | Groundwater | MEVTRKGWSGRKEVVGDFLKFGVPVQRVRIPSDQSLDRQVGSEPCAGVGNHDGDT* |
Ga0181514_10862853 | 3300019268 | Peatland | MEATSKGWSERRNVDGHALKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCSVDA |
Ga0187892_100447973 | 3300019458 | Bio-Ooze | MEATRKGWSERKNVIGHVLKFGILIQRVRIPPGQSVDPQTGNEPCSGAGDRSVDA |
Ga0179592_100387751 | 3300020199 | Vadose Zone Soil | MEATSEGWSERRSVVGHGLKFGLLIQRVRIPPGQSVDPQVGSEPCSGTGNCPVDA |
Ga0179596_104103062 | 3300021086 | Vadose Zone Soil | MPVRAIAGHIFDEPRRESMEATSKGWSEGRNVIGDVLKFGLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA |
Ga0179596_104160062 | 3300021086 | Vadose Zone Soil | MEATRKGWSEGKDVIGHVLKFGVSVQRVRNPSGQSADPQAGNKPCDGVGNHDGDA |
Ga0210394_101210724 | 3300021420 | Soil | MDKEFIMEATSKGWSERKNVIGYVLKFGLLIQRVQIPSGQSVDPQAGSEPCSGTGNCRVD |
Ga0179589_101610133 | 3300024288 | Vadose Zone Soil | MEATSKGWSEGRNVIGDVLKFGLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA |
Ga0210029_10249522 | 3300025008 | Aquifer | TRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0210022_10290031 | 3300025017 | Aquifer | RIMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0210030_10399322 | 3300025020 | Aquifer | GARGKVMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGD |
Ga0210024_10370173 | 3300025031 | Aquifer | AMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0210049_10580891 | 3300025036 | Groundwater | MEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0210044_1000061042 | 3300025288 | Groundwater | MEVTRKGWSGGKEVVGDLRKFGVPVQRVRIPSDQSPDRQVGSEPCDGVSNHDGDT |
Ga0210044_100793083 | 3300025288 | Groundwater | MEVTRKGWSGRKEVVGDFLKFGVPVQRVRIPPDQSPDRQVGSEPCDGVGNHDGDT |
Ga0209323_101983672 | 3300025314 | Soil | GDVMEVTRKGWSGGRDVKVGNVLKFGVLVQRVRTLPGQSGDPQTGSEPCDGAGNRDGDT |
Ga0210047_10848912 | 3300025787 | Groundwater | MEVTRKGWSGGKEVVGDLRKFGVPVQRVRIPSDQSPDRQVGSEPCDGVGNHDGDT |
Ga0210015_10485543 | 3300025831 | Aquifer | RGKVMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0210039_11733722 | 3300025835 | Groundwater | DHTMEVTRKGWFGRREVVGDFPKFGVPVQRVRIPSDQSQDRQVGSEPCDGVGNHDGDT |
Ga0209807_10407491 | 3300026530 | Soil | MEATSKGWSERRNVDGHVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA |
Ga0209117_10315112 | 3300027645 | Forest Soil | MEVTRKGWSERRGGFGTVLKFGVSVQRVRIPPGQSEDPQAGSEPCDGVGNHDGDT |
Ga0209180_101139793 | 3300027846 | Vadose Zone Soil | VFVEPRRGSMEATSKGWSEGRNVIGDVLKFGLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA |
Ga0209693_103419802 | 3300027855 | Soil | MEATSEGWSEGRNVIGHVLKFGLLIQRVQIPSGQSVDPQAGSEPCSGTGNCSADA |
Ga0209062_10466791 | 3300027965 | Surface Soil | MEATRQGWSERTDVIGHVRKFGVSVQRVRIPPGQSADPQAGSKPCDAGGDLGGDA |
Ga0268266_100027413 | 3300028379 | Switchgrass Rhizosphere | MEATSKGWSERRNVIGHVLKFGVLIQRVRIPPGQSVDPQVGSEPCSGSGNCSVDE |
Ga0137415_100562655 | 3300028536 | Vadose Zone Soil | MEATRKGWSERKDVIRHVLKFGVSVQRVRIPSGQSVDPQTGNKPCDGVGNHDGDA |
Ga0311339_102229383 | 3300029999 | Palsa | MEATRKAWSEGTNVIGYVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGAGNCPVDA |
Ga0311353_108096752 | 3300030399 | Palsa | MEATSEGWSRRKNVIGYVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGAGNCPVDA |
Ga0302314_117613811 | 3300030906 | Palsa | MEVTRKGWSERKDGIGTVLKFGVSVQRVRIPPGQSTDLQVGSEPCDG |
Ga0302180_103969822 | 3300031028 | Palsa | MEATSKGWSEGRNVIGYVLKFGLLIQRVRIPSGQSVDPQAGSEPCSGAGNCPVDA |
Ga0170834_1069009582 | 3300031057 | Forest Soil | MEATSEGWSERKNVIGHVLKFGLLIQRVRNPPGQSVDPQAGSEPCSEAGNCLVDA |
Ga0170834_1073696533 | 3300031057 | Forest Soil | MEATSKGWSRRRNVIGYVLKFGVLIQRVRIPPGQSVDPQAGSEPCSGTGNCSVDA |
Ga0170824_1087973261 | 3300031231 | Forest Soil | MEATSKGWSRRRNVIGYVLKFGVLIQRVRIPPGQSVDPQAGSEPCSRTGNCPVDA |
Ga0302324_1000425779 | 3300031236 | Palsa | MEVTRKGWSERKDGIGTVLKFGVSVQRVRIPPGQSTDLQVGSEPCDGVGEPRRRYVGA |
Ga0307516_1000008535 | 3300031730 | Ectomycorrhiza | MEATSKGWSEGTNVIGDVLKFRLLVQRVRIPSGQSVDPQAGSEPCSGTGNCPVDA |
Ga0307477_100935803 | 3300031753 | Hardwood Forest Soil | MEATSKGWSERRNVVGHVLKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCPVDA |
Ga0315284_101547363 | 3300032053 | Sediment | MEVTRKGWSGRKEVFGDFLKFGVPIQRVRIPPDQSPDRQVGSEPCDDVGNHDGDT |
Ga0306924_108154801 | 3300032076 | Soil | VEATSKDWSERRDVVGHVLKFALLIQRVRIPSGQSADPQAGSEPCSG |
Ga0315281_102118861 | 3300032163 | Sediment | MEVTRKGWSGRKEVVGDFLKFGEPVQRVRIPPDQSPDRQVGSEPCDGVGNHDGDT |
Ga0307471_1001252301 | 3300032180 | Hardwood Forest Soil | MEVTRKGWSEGKDVIGNVRKFGVSVQRVRIPPGQSEDPQAGSEPGDGVGNHDGDT |
Ga0307471_1019001102 | 3300032180 | Hardwood Forest Soil | MEATRKGWSERRNVIGHVLKFGLLIQRVRIPPGQSVDPQAGSEPCSGTGNCSVDA |
Ga0315287_103146083 | 3300032397 | Sediment | MEVTRKGRSGRKEVVGDFLKFGVPVQRVRIPPDQSPDRQVGSEPCDGAGNRDGDT |
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