Metagenome / Metatranscriptome Family F095891

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F095891
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	73 residues
Representative Sequence	MQIQITLMPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERE
Number of Associated Samples	66
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	88.46 %
% of genes near scaffold ends (potentially truncated)	17.14 %
% of genes from short scaffolds (< 2000 bps)	80.95 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (56.190 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (30.476 % of family members)
Environment Ontology (ENVO)	Unclassified (46.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.714 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.35% β-sheet: 22.58% Coil/Unstructured: 58.06%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF14347	DUF4399	12.38
PF13230	GATase_4	3.81
PF09361	Phasin_2	2.86
PF05496	RuvB_N	1.90
PF02517	Rce1-like	1.90
PF06262	Zincin_1	1.90
PF00072	Response_reg	0.95
PF00497	SBP_bac_3	0.95
PF01329	Pterin_4a	0.95
PF00034	Cytochrom_C	0.95
PF13439	Glyco_transf_4	0.95
PF13525	YfiO	0.95
PF01738	DLH	0.95
PF13586	DDE_Tnp_1_2	0.95
PF00118	Cpn60_TCP1	0.95
PF04226	Transgly_assoc	0.95
PF13466	STAS_2	0.95
PF01740	STAS	0.95
PF00664	ABC_membrane	0.95
PF01594	AI-2E_transport	0.95
PF05488	PAAR_motif	0.95
PF13673	Acetyltransf_10	0.95
PF02796	HTH_7	0.95
PF13358	DDE_3	0.95
PF12762	DDE_Tnp_IS1595	0.95
PF00484	Pro_CA	0.95
PF13505	OMP_b-brl	0.95
PF04143	Sulf_transp	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	1.90
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.90
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.95
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.95
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.95
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.95
COG2391	Uncharacterized membrane protein YedE/YeeE, contains two sulfur transport domains	General function prediction only [R]	0.95
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
All Organisms	root	All Organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
cellular organisms	root	All Organisms → cellular organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	25.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.76 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.90 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.95 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	3.81 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.90 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.95 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.95 %
Klebsiella/Raoultella group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.90 %
Rhodomicrobium udaipurense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium udaipurense	0.95 %
Klebsiella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella	0.95 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.95 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	1.90 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.95 %
Rhodomicrobium udaipurense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium udaipurense	0.95 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.95 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Rhizobium sp. SEMIA 4085	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	1.90 %
Klebsiella pneumoniae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	0.95 %
Rhodomicrobium udaipurense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium udaipurense	0.95 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.95 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100279300	Not Available	811	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100472556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1137	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1001732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4425	Open in IMG/M
3300001213\|JGIcombinedJ13530_100650833	All Organisms → cellular organisms → Bacteria → Proteobacteria	879	Open in IMG/M
3300001213\|JGIcombinedJ13530_102001365	Not Available	610	Open in IMG/M
3300004152\|Ga0062386_100486457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	1001	Open in IMG/M
3300006050\|Ga0075028_101003943	Not Available	519	Open in IMG/M
3300006052\|Ga0075029_100549915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	767	Open in IMG/M
3300006086\|Ga0075019_10737282	Not Available	625	Open in IMG/M
3300006174\|Ga0075014_100783808	Not Available	562	Open in IMG/M
3300006605\|Ga0074057_10576826	All Organisms → cellular organisms → Bacteria → Terrabacteria group	594	Open in IMG/M
3300009143\|Ga0099792_10418882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Klebsiella/Raoultella group → Klebsiella → Klebsiella pneumoniae	823	Open in IMG/M
3300009524\|Ga0116225_1276181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	752	Open in IMG/M
3300009672\|Ga0116215_1201739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	876	Open in IMG/M
3300009698\|Ga0116216_10595157	Not Available	666	Open in IMG/M
3300009700\|Ga0116217_10450190	Not Available	813	Open in IMG/M
3300009824\|Ga0116219_10203504	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300009824\|Ga0116219_10706196	Not Available	551	Open in IMG/M
3300010339\|Ga0074046_10002417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16167	Open in IMG/M
3300010339\|Ga0074046_10020603	All Organisms → cellular organisms → Bacteria	4631	Open in IMG/M
3300010339\|Ga0074046_10034019	All Organisms → cellular organisms → Bacteria	3463	Open in IMG/M
3300010343\|Ga0074044_10695115	Not Available	664	Open in IMG/M
3300010366\|Ga0126379_11847010	Not Available	708	Open in IMG/M
3300010366\|Ga0126379_12203529	Not Available	652	Open in IMG/M
3300010379\|Ga0136449_100128237	All Organisms → cellular organisms → Bacteria → Proteobacteria	5065	Open in IMG/M
3300010379\|Ga0136449_100768728	All Organisms → cellular organisms → Bacteria → Proteobacteria	1599	Open in IMG/M
3300010379\|Ga0136449_101228420	Not Available	1177	Open in IMG/M
3300011340\|Ga0151652_12412750	Not Available	551	Open in IMG/M
3300011340\|Ga0151652_12901301	Not Available	960	Open in IMG/M
3300012685\|Ga0137397_11271099	Not Available	525	Open in IMG/M
3300014490\|Ga0182010_10266769	Not Available	913	Open in IMG/M
3300014492\|Ga0182013_10465096	Not Available	665	Open in IMG/M
3300015242\|Ga0137412_10584587	Not Available	847	Open in IMG/M
3300015372\|Ga0132256_100091992	All Organisms → cellular organisms → Bacteria → Proteobacteria	2933	Open in IMG/M
3300015374\|Ga0132255_100123658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3561	Open in IMG/M
3300016422\|Ga0182039_11931703	Not Available	542	Open in IMG/M
3300016445\|Ga0182038_12088520	Not Available	514	Open in IMG/M
3300017822\|Ga0187802_10166151	Not Available	845	Open in IMG/M
3300017822\|Ga0187802_10285671	Not Available	642	Open in IMG/M
3300017939\|Ga0187775_10014513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2066	Open in IMG/M
3300017942\|Ga0187808_10240801	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300017955\|Ga0187817_10962033	Not Available	547	Open in IMG/M
3300017959\|Ga0187779_10593462	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300017961\|Ga0187778_10606870	Not Available	734	Open in IMG/M
3300017961\|Ga0187778_11156587	Not Available	541	Open in IMG/M
3300017961\|Ga0187778_11161595	Not Available	539	Open in IMG/M
3300017966\|Ga0187776_10034987	All Organisms → cellular organisms → Bacteria	2809	Open in IMG/M
3300017966\|Ga0187776_10153442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1418	Open in IMG/M
3300017966\|Ga0187776_10759589	Not Available	692	Open in IMG/M
3300017972\|Ga0187781_10073316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2362	Open in IMG/M
3300017972\|Ga0187781_10527822	Not Available	848	Open in IMG/M
3300017973\|Ga0187780_10311907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1107	Open in IMG/M
3300017974\|Ga0187777_10553407	Not Available	808	Open in IMG/M
3300017974\|Ga0187777_11064538	Not Available	587	Open in IMG/M
3300017974\|Ga0187777_11154408	Not Available	565	Open in IMG/M
3300017974\|Ga0187777_11438968	Not Available	509	Open in IMG/M
3300017975\|Ga0187782_10588279	Not Available	855	Open in IMG/M
3300017995\|Ga0187816_10267206	Not Available	748	Open in IMG/M
3300018029\|Ga0187787_10280887	Not Available	618	Open in IMG/M
3300018032\|Ga0187788_10405344	Not Available	574	Open in IMG/M
3300018058\|Ga0187766_11016931	Not Available	591	Open in IMG/M
3300018058\|Ga0187766_11123692	Not Available	565	Open in IMG/M
3300018062\|Ga0187784_10155158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1869	Open in IMG/M
3300018064\|Ga0187773_10056780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1820	Open in IMG/M
3300018064\|Ga0187773_11134488	Not Available	521	Open in IMG/M
3300018085\|Ga0187772_11204406	Not Available	558	Open in IMG/M
3300018086\|Ga0187769_10275637	Not Available	1254	Open in IMG/M
3300018086\|Ga0187769_10524724	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	894	Open in IMG/M
3300018086\|Ga0187769_10713118	Not Available	758	Open in IMG/M
3300018086\|Ga0187769_11234877	Not Available	565	Open in IMG/M
3300018086\|Ga0187769_11426420	Not Available	524	Open in IMG/M
3300018089\|Ga0187774_10296397	Not Available	939	Open in IMG/M
3300018090\|Ga0187770_10263083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1338	Open in IMG/M
3300018090\|Ga0187770_10544160	Not Available	920	Open in IMG/M
3300026320\|Ga0209131_1344585	Not Available	553	Open in IMG/M
3300027824\|Ga0209040_10030207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3433	Open in IMG/M
3300027824\|Ga0209040_10056463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium udaipurense	2344	Open in IMG/M
3300027825\|Ga0209039_10012484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	4757	Open in IMG/M
3300027825\|Ga0209039_10017397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3776	Open in IMG/M
3300027825\|Ga0209039_10073466	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300027854\|Ga0209517_10720321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	511	Open in IMG/M
3300027896\|Ga0209777_10272836	Not Available	1320	Open in IMG/M
3300027898\|Ga0209067_10404878	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300027902\|Ga0209048_10016608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6458	Open in IMG/M
3300027902\|Ga0209048_10160249	Not Available	1670	Open in IMG/M
3300027902\|Ga0209048_10702658	Not Available	666	Open in IMG/M
3300027903\|Ga0209488_10667380	Not Available	748	Open in IMG/M
3300032160\|Ga0311301_10241679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2997	Open in IMG/M
3300032160\|Ga0311301_10433458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1991	Open in IMG/M
3300032160\|Ga0311301_10834753	Not Available	1257	Open in IMG/M
3300032160\|Ga0311301_11156560	Not Available	998	Open in IMG/M
3300032160\|Ga0311301_12009745	Not Available	674	Open in IMG/M
3300032782\|Ga0335082_11103454	Not Available	660	Open in IMG/M
3300033004\|Ga0335084_10411250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1394	Open in IMG/M
3300033402\|Ga0326728_10005537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	35231	Open in IMG/M
3300033402\|Ga0326728_10335992	Not Available	1344	Open in IMG/M
3300033405\|Ga0326727_10163036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2578	Open in IMG/M
3300033405\|Ga0326727_10336201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1447	Open in IMG/M
3300033405\|Ga0326727_10468301	Not Available	1114	Open in IMG/M
3300033433\|Ga0326726_10526106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. SEMIA 4085	1133	Open in IMG/M
3300033433\|Ga0326726_10579226	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300033806\|Ga0314865_011855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2155	Open in IMG/M
3300034090\|Ga0326723_0296191	Not Available	726	Open in IMG/M
3300034159\|Ga0370509_0044185	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.10%
Host-Associated	Host-Associated	1.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.29%
Aquatic	Environmental → Aquatic	23.81%
Plants	Host-Associated → Plants	1.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Freshwater	Environmental → Aquatic → Freshwater	17.14%
Peat	Environmental → Terrestrial → Peat	7.62%
Sediment	Environmental → Aquatic → Sediment	4.76%
Marine	Environmental → Aquatic → Marine	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	40.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	3.81%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	38.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.95%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	3.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.86%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	30.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	14.29%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	7.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.67%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.76%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.76%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	3.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.81%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.81%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	1.90%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.95%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.95%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.95%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.95%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.95%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034159	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_0210_18	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1002793002	3300000364	Soil	MRIQITLEPKQEQIFELGEVLRKFAADYENRMIRSIKSGRHTLHDEGGELVASLEIVQGALREREQLPYDA*
INPhiseqgaiiFebDRAFT_1004725562	3300000364	Soil	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITKGAARERQNALSVTDVWYR*
AP72_2010_repI_A01DRAFT_10017324	3300000579	Forest Soil	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITTGAARERQNALSMTDIWYR*
JGIcombinedJ13530_1006508332	3300001213	Wetland	MQIQITLVPEQEAAYELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVEGATRERMQSHRSLGDVVYR*
JGIcombinedJ13530_1020013651	3300001213	Wetland	MQVNITLQPEQEDGHELAEILRAFAADYDSWMIRSIKGGKHTLHDEAGDLIASLEIVTGAKSERKHRPPASSEVKLRERA*
Ga0062386_1004864573	3300004152	Bog Forest Soil	MQVQITLQPEQEESHELGEVLRAFAADYDSWMIRSIKGGRHTFHDEAGDLIASLEIVKGARRDRKQT*
Ga0075028_1010039431	3300006050	Watersheds	VQIQITLVPEQEAAYELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARSEREQCF*
Ga0075029_1005499152	3300006052	Watersheds	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARSEREQCF*
Ga0075019_107372822	3300006086	Watersheds	MQIQITLLPEQEGAYNLGEVLRAFAKDYESWMIRSIKAGRHTLHDEAGDLVASLEITKGASHERQNALSMTDVWYR*
Ga0075014_1007838082	3300006174	Watersheds	VPEQEAAYELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARSERE*
Ga0074057_105768261	3300006605	Soil	MQIQITLLPEQEGAYNLGEVLRAFAKDYESWMIRSIKAGRHTLHDEAGDLVASLEITKGASHERQNALSMADVWYR*
Ga0099792_104188822	3300009143	Vadose Zone Soil	MQIQITLEPKQEKFFELSEVLHAFAADYENWMIRSVKAGKHTLHDEGGDLIASLEIVEGAAQERELPLTA
Ga0116225_12761811	3300009524	Peatlands Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSITTGRHTLHDEAGALIASLEIVKGARCERE*
Ga0116215_12017391	3300009672	Peatlands Soil	AFELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAARERAQSHAQSMADVWHR*
Ga0116216_105951572	3300009698	Peatlands Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSITTGRHTLHDEAGALIASLEIVKGARRERE*
Ga0116217_104501902	3300009700	Peatlands Soil	MQIQITLVPEQETAFELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAARERAQSHAQSMADVWHR*
Ga0116219_102035042	3300009824	Peatlands Soil	MQIQITLEPKQENCYELAEVLRAFAKDYDTWMIRSLKSGRHTLHNEAGELIASLEIVKGAVREREHRIAPG*
Ga0116219_107061962	3300009824	Peatlands Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIKSIKTGRHTLHDEAGALIASLEIVKGARSEREQCC*
Ga0074046_100024173	3300010339	Bog Forest Soil	MQIQITVVPEQEAAFELAEVLRAFAKDYESWMIRSVKSGRHTLHDEAGGLVASLEIVKGAAREREHAQSTDVWYR*
Ga0074046_100206031	3300010339	Bog Forest Soil	LEPKQENCYELAEVLRAFAKDYDTWMIRSLKSGRHTLHDEAGELIASLEIVKGAVRERERRIAPG*
Ga0074046_100340194	3300010339	Bog Forest Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSTKTGRHTLHDEAGALIASLEIVKGARRERE*
Ga0074044_106951151	3300010343	Bog Forest Soil	MQIQITLEPEQEENFELAEVLRAFAADYENWMIRSVKSGRHTLHAEDGELVASLEIVKGAERERDQSLAARVLDIRYG*
Ga0126379_118470101	3300010366	Tropical Forest Soil	MQIQITVEPKQENCYELAEVLRAFARDYETWMIRSIKSGRHTLHDEAGELVASLEIVKGAMSEREHRVRLEAE*
Ga0126379_122035291	3300010366	Tropical Forest Soil	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSIKAGRHTLHDEAGDLVASLEITKGAAHERQNALSMADVWYR
Ga0136449_1001282371	3300010379	Peatlands Soil	MQVQITLQPEQEESHELGEVLRAFAADYDSWMIRSVKGGRHTFHDEAGDLIASLEIVKGARRDRKQT*
Ga0136449_1007687283	3300010379	Peatlands Soil	MQIQITLVPEQETAYELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAARERMQSHAQSLDDVWYR*
Ga0136449_1012284201	3300010379	Peatlands Soil	MQIQITLEPEQEENFELDEVLRAFAADYESWMIRSVKAGRHTLHAESGELVASLEIVKGAERERDQSVATKVLDIRYG*
Ga0151652_124127502	3300011340	Wetland	MQIQIIVEPRQENCYELNEVLRAFAKDYETWMIKSIKAGRHTLHDESGELIASLEIVKGALCEREHGVHLKTA*
Ga0151652_129013013	3300011340	Wetland	MQIQITVEPKQENCYELNEVLRAFAKDYETWMIKSIKAGRHTLHDEAGELIASLEIVKGALCEREHGVRLKTA*
Ga0137397_112710991	3300012685	Vadose Zone Soil	VPVRAVACIAPYLGEGTTVQIQITLEPKQEKFFELSEVLHAFAADYENWMIRSVKAGKHTLHDEGGDLIASLEIVEGAAQERELPLTTRDGPKRAS*
Ga0182010_102667691	3300014490	Fen	MREVISMQVQITLQPEQEEAFELAEVLRAFAADYENWMIGSVKSGRHTLHDESGELIASLEIVEGAKRERDHLLATRVLDSRFG*
Ga0182013_104650961	3300014492	Bog	MQIQITLVSEQEAAFELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAERERMRSHAQSLGDVLYR*
Ga0137412_105845872	3300015242	Vadose Zone Soil	MQIQITLEPKQEKFFELSEVLHAFAADYENWMIRSVKAGKHTLHDEGGDLIASLEIVEGAAQERELPLTARDGAKRAS*
Ga0132256_1000919923	3300015372	Arabidopsis Rhizosphere	MFHREQQRVTAGEMIGADQRRTAMQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITTGAARERQNALSMTDVWYR*
Ga0132255_1001236585	3300015374	Arabidopsis Rhizosphere	MRIQITLEPKQEQIFELGEVLRKFAADYENRMIRSIKSGRHTLHDEGGELVASLEIVQGALREREHLPYDA*
Ga0182039_119317031	3300016422	Soil	TCKDGGVDSKRESVMQIQITVEPQQENCHELAEVLRAFAKDYETWMIKSIKFGRHTLHDEAG
Ga0182038_120885201	3300016445	Soil	MTCKDGGVDSKRESVMQIQITVEPQQENCHELAEVLRAFAKDYETWMIRSIKSGRHTLHDEAGELIASLEIVKGA
Ga0187802_101661511	3300017822	Freshwater Sediment	MQIQITLEPEQEENFELAEVLRAFAADYDNWMIKSVKSGRHTLHAEDGGLVASLEIVKGAEQERDGEVSARDLHIRYG
Ga0187802_102856711	3300017822	Freshwater Sediment	VLKGYEGDSMQIQITLEPEQEENFELAEILRAFAADYENWMIRSVKSGRHTLHAEDGELVASLEIVKGAERERDQTLAARVLDIRYG
Ga0187775_100145132	3300017939	Tropical Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSIKAGRHTLHDEAGDLVASLEITKGAAHERQNALSMADIWYR
Ga0187808_102408012	3300017942	Freshwater Sediment	MQIQITLEPEQEENFELAEVLRAFAADYENWMIRSVKSGRHTLHAEDGELVASLEIVKGAERERDQALAARVLDIRYG
Ga0187817_109620331	3300017955	Freshwater Sediment	MQIQITLVPAQEATHELAEVLRAFAKDYEAWMIRSIKTGRHTLHDEAGALIASLEIVKGARSEREQCF
Ga0187779_105934622	3300017959	Tropical Peatland	MQIQITVEPKQENCYELAEVLRAFARDYETWMIRSIKSGRHTLHDEAGELVASLDIVKGAKCEREHRGSPGS
Ga0187778_106068701	3300017961	Tropical Peatland	MQIQITVEPQQENCHELAEVLRAFAKDYETWMIRSIKYGRHTLHDEAGELIASLEIVKGAMREREHRVRPDTG
Ga0187778_111565871	3300017961	Tropical Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSIKAGRHTLHDEAGDLVASLEITKGAAHERQNALSLADVWYR
Ga0187778_111615951	3300017961	Tropical Peatland	MQIQITLVPEQEAAFELAEVLRAFAKDYESWMIRSIKSGRHTLHDEAGDLVASLEIVKGA
Ga0187776_100349874	3300017966	Tropical Peatland	MQVNITLDPEQEESHELAEVLRAFAADYDSWMIRSIKRGRHTLHDEAGALIASLEIVKGAERERKLK
Ga0187776_101534423	3300017966	Tropical Peatland	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERE
Ga0187776_107595892	3300017966	Tropical Peatland	MQIHITLEPGQEHAHELAEVLRAFATDYETWMIRSIKSGRHTLHDEAGDLIASLEIVKGAARERGEVHSNSVNRWFW
Ga0187781_100733163	3300017972	Tropical Peatland	MQIQITLVPEQEAAFELAEVLRAFAKDYESWMIRSVKSGRHTLHDEAGDLVASLEIVKGAARERAQFHVQSLANV
Ga0187781_105278222	3300017972	Tropical Peatland	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKSGRHTLHDEAGALIASLEIVKGARRERE
Ga0187780_103119071	3300017973	Tropical Peatland	MQIQITLVPEQEAAFELAEVLRAFAKDYESWMIRSIKSGRHTLHDEAGDLVASLEIVKGAARERTQFHVQSLANV
Ga0187777_105534071	3300017974	Tropical Peatland	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGSLIASLEIVKGARRERE
Ga0187777_110645382	3300017974	Tropical Peatland	LGSKRESVMQIQITVEPQQENHHELAEVLRAFAKDYETWMIRSTKSGRHTLHDEAGELIASLEIVKGAVREREHRVRLETE
Ga0187777_111544081	3300017974	Tropical Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITKGAAHERQNTLSMADVWYR
Ga0187777_114389681	3300017974	Tropical Peatland	MQIQITLVPEQETTYELAEVLRAFAKDYETWMIRSIKSGRHTLHDESGELVASLEITRGAARERAHAQSMADVWYR
Ga0187782_105882793	3300017975	Tropical Peatland	VEPKQENCYELAEVLRAFARDYETWMIRSIKSGRHTLHDEAGELVASLEIVKGAMSERGHRARLEAE
Ga0187816_102672061	3300017995	Freshwater Sediment	MQIQITLEPEQEENFELAEVLRAFADDYENWMIKSVKSGKHTLHAEDGGLVASLEIVKGAEQERDGEVSARDLHIRYG
Ga0187787_102808871	3300018029	Tropical Peatland	MQIKITLVPEQESTHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERQ
Ga0187788_104053441	3300018032	Tropical Peatland	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERA
Ga0187766_110169312	3300018058	Tropical Peatland	MQIQITLVPEQEATFELAEVLRAFAKDYESWMIRSVKSGRHTLHDEAGDLVASLEIVKGAARERTQFHVQSLANV
Ga0187766_111236921	3300018058	Tropical Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSIKAGRHTLHDEAGDLVASLEITKGAAHERQNALSTADVWYR
Ga0187784_101551582	3300018062	Tropical Peatland	MQIQITLVPEQEATFELAEVLRAFAKDYESWMIRSIKSGRHTLHDEAGDLVASLEIVKGAARERTQFHVQSLANV
Ga0187773_100567802	3300018064	Tropical Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITKGAAHERQNALSMADIWYR
Ga0187773_111344881	3300018064	Tropical Peatland	VDSKRESVMQIQITVEPQQENCHELAEVLRAFAKDYETWMIRSIKSGRHTLHDEAGELIVSLEIVKGTMREREHRV
Ga0187772_112044061	3300018085	Tropical Peatland	MQIHITLEPGQEDSHELAEVLRAFATDYETWMIRSIKSGRHTLHDEAGDLIASLEIVKGAARERGEVHSNGVNRWFW
Ga0187769_102756373	3300018086	Tropical Peatland	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIKSIKSGRHTLHDEAGALIASLEIVKGARRERE
Ga0187769_105247242	3300018086	Tropical Peatland	MQIQITLVPEQEAAFELAEVLRAFAKDYESWMIRSVKSGRHTLHDEAGDLVASLEIVKGAARERTQFHVQSLANV
Ga0187769_107131181	3300018086	Tropical Peatland	MQVNITLDSEQEESHELGEVLRAFAADYDSWMIRSIKRGRHTLHDEAGALIASLEIVKGAERERKLK
Ga0187769_112348772	3300018086	Tropical Peatland	MQIQITLEPKQENCYELAEVLRAFAKDYDTWMIRSLKSGRHTLHDEAGELIASLEIIKGAVREREHRIAPG
Ga0187769_114264201	3300018086	Tropical Peatland	PEQEAAFELAEVLRAFAKDYESWMIRSIKSGRHTLHDEAGDLVASLEIVKGAARERAQFHVQSLANV
Ga0187774_102963971	3300018089	Tropical Peatland	VDSKRESVMQIQITVEPQQENCHELAEVLRAFAKDYETWMISSIKSGRHTLHDEAGELIASLEIVKGAMREREHRVDLDIG
Ga0187770_102630831	3300018090	Tropical Peatland	MQIQITLEPGQEETHELAEVLRAFATDHETWMIRSIKSGRHTLHDEAGDLIASLEIVKGAGRERGESHADGVI
Ga0187770_105441602	3300018090	Tropical Peatland	MQIQITLEPRQEEAFELAEVLRAFAADYESWMIRSIKSGRHTLHDEGGELVASLEIVRGAAHERTPSRSTADILLL
Ga0209131_13445851	3300026320	Grasslands Soil	MQIQITLEPKQEKFFELSEVLHAFAADYENWMIRSVKAGKHTLHDEGGDLIASLEIVEGAAHERELPLTTRDGPKRAS
Ga0209040_100302072	3300027824	Bog Forest Soil	MQIKITLVPAQEATHELAGVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERE
Ga0209040_100564631	3300027824	Bog Forest Soil	MQVQITLQPEQEESHELGEVLRAFAADYDSWMIRSIKGGRHTFHDEAGDLIASLEIVKGARRDRKQT
Ga0209040_105137152	3300027824	Bog Forest Soil	KQEQIFELGEVLRKFAADYENRMIRSIKSGRHTLHDEGGELVASLEIVQGAFREREQLPYDA
Ga0209039_100124843	3300027825	Bog Forest Soil	VQIQITLVPEQEAAYELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARSEREQ
Ga0209039_100173973	3300027825	Bog Forest Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSITTGRHTLHDEAGALIASLEIVKGARCERE
Ga0209039_100734661	3300027825	Bog Forest Soil	MQIQITLEPKQENCYELAEVLRAFAKDYDTWMIRSLKSGRHTLHDEAGELIASLEIVKGAVRERERRIAPG
Ga0209517_107203212	3300027854	Peatlands Soil	MQIHITLEPEQEENFELGEVLRAFAADYENWMIQTIESGRHTLHDEGGELIASLEFVMGGAH
Ga0209777_102728363	3300027896	Freshwater Lake Sediment	MQIKITLEPEQEATHELADVLRAFAKDYETWMIKSIKTGRHTLHDEAGALIASLEIVKGARRERQ
Ga0209067_104048782	3300027898	Watersheds	MQIQITLLPEQEGAYNLGEVLRAFAKDYESWMIRSIKAGRHTLHDEAGDLVASLEITKGASHERQNALSMTDAWYR
Ga0209048_100166087	3300027902	Freshwater Lake Sediment	MQIQITLVPEQEAAFELAEVLRAFAKDYETWMIRSVKSGRHTLHDEAGELVASLEIVKGAALERQHAQSMTDAWYR
Ga0209048_101602492	3300027902	Freshwater Lake Sediment	MQIQITLMPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARRERE
Ga0209048_107026582	3300027902	Freshwater Lake Sediment	MQTQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSIKAGRHTLHDEAGDLVASLEITKGASHERQNALSITDVWYR
Ga0209488_106673801	3300027903	Vadose Zone Soil	MQIQITLEPKQEKFFELSEVLHAFAADYENWMIRSVKAGKHTLHDEGGDLIASLEIVEGAAHERELPLTARDGPKQAS
Ga0311301_102416794	3300032160	Peatlands Soil	MQIQITLVPEQETAFELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAARERAQSHAQSMADVWHR
Ga0311301_104334583	3300032160	Peatlands Soil	LGSYEGDSMQIQITLEPEQEENFELAEVLRAFAADYENWMIRSVKAGKHTLHAEDGGLVASLEIVKGAERERDQALATKVLDIRYG
Ga0311301_108347533	3300032160	Peatlands Soil	MQIQITLEPEQEENFELDEVLRAFAADYESWMIRSVKAGRHTLHAESGELVASLEIVKGAERERDQSVATKVLDIRYG
Ga0311301_111565603	3300032160	Peatlands Soil	MQIQITLVPEQETAYELAEVLRAFAKDYETWMIRSIKSGKHTLHDEAGELVASLEFVKGAARERMQSHAQSLDDVWYR
Ga0311301_120097451	3300032160	Peatlands Soil	MQVQITLQPEQEESHELGEVLRAFAADYDSWMIRSVKGGRHTFHDEAGDLIASLEIVKGARRDRKQT
Ga0335082_111034541	3300032782	Soil	GEMIGEDQRRTAMQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITKGAARERQNALSVTDVWYR
Ga0335084_104112502	3300033004	Soil	MQIQITLLPEQEGTYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITKGAARERQNALSVTDVWYR
Ga0326728_1000553728	3300033402	Peat Soil	MQIQITLEPKHEEAYELAEVLRAFAADYENWMIRSIKTGRHTLHDEGGELIASLEIVKGAVRERDPSHAARLMDIQFR
Ga0326728_103359922	3300033402	Peat Soil	RRIHALREEDVMQIQITLEPEQEDSHELAEVLRAFAADYETWMIRSVKAGRHTLHDEAGDLIASLEIVKGAARERPQSAARMHRLR
Ga0326727_101630362	3300033405	Peat Soil	MQIQITLEPEQEDSHELAEVLRAFAADYETWMIRSVKAGRHTLHDEAGDLIASLEIVKGAARERPQSAARMHRLR
Ga0326727_103362012	3300033405	Peat Soil	MQIHITLEPDQEKSHELAEVLRAFAADYDSWMIRSIKSGRHTLHDEAGDLIASLEIVKGAARERAETLAASTSDILSAV
Ga0326727_104683011	3300033405	Peat Soil	MQIQITLEPKQENSYELAEVLRAFARDYDSWMIRSLKSGRHTLHDEAGELIASLEIVKGTEREREHRIAPR
Ga0326726_105261061	3300033433	Peat Soil	MQIKITLVPEQEATHELAEVLRAFAKDYETWMIRSIKTGRHTLHDEAGALIASLEIVKGARSEREQCF
Ga0326726_105792261	3300033433	Peat Soil	QITLEPKQENCYELAEVLRAFAKDYDTWMIRSLKSGRHTLHDEAGELIASLEIVKGAVREREHRIAPG
Ga0314865_011855_1050_1280	3300033806	Peatland	MQIQITLLPEQEGAYDLGEVLRAFAKDYETWMIRSVKAGRHTLHDEAGDLVASLEITTGAARERQNALSMTDVWYR
Ga0326723_0296191_3_179	3300034090	Peat Soil	VPEQEATHELAEVLRAFAKDYETWMIKSIKTGRHTLHDEAGALIASLEIVKGARSERE
Ga0370509_0044185_617_820	3300034159	Untreated Peat Soil	MQVQITLQPEQEESHELGEVLRAFAADYDNWMIRSIKGGRHTFHDEGGDLIASLEIIKGAQRDRKQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095891

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences