Metagenome / Metatranscriptome Family F095922

Basic Information
Family ID	F095922
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	40 residues
Representative Sequence	MSGNRMRVLTDWTLNGITSPESTSLAVISAESVPLDVNQPRA
Number of Associated Samples	94
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.52 %
% of genes near scaffold ends (potentially truncated)	73.33 %
% of genes from short scaffolds (< 2000 bps)	86.67 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Bacteria (80.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.143 % of family members)
Environment Ontology (ENVO)	Unclassified (17.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.857 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.43% β-sheet: 0.00% Coil/Unstructured: 78.57%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF00196	GerE	14.29
PF07690	MFS_1	11.43
PF07992	Pyr_redox_2	4.76
PF00440	TetR_N	3.81
PF13191	AAA_16	2.86
PF03479	PCC	1.90
PF00923	TAL_FSA	1.90
PF01243	Putative_PNPOx	1.90
PF00132	Hexapep	1.90
PF13185	GAF_2	1.90
PF00300	His_Phos_1	1.90
PF03816	LytR_cpsA_psr	0.95
PF00731	AIRC	0.95
PF03551	PadR	0.95
PF13462	Thioredoxin_4	0.95
PF00696	AA_kinase	0.95
PF01741	MscL	0.95
PF13396	PLDc_N	0.95
PF00296	Bac_luciferase	0.95
PF13424	TPR_12	0.95
PF13649	Methyltransf_25	0.95
PF01872	RibD_C	0.95
PF08323	Glyco_transf_5	0.95
PF02467	Whib	0.95
PF13399	LytR_C	0.95
PF13378	MR_MLE_C	0.95
PF14224	DUF4331	0.95
PF00515	TPR_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	1.90
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	1.90
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.95
COG0297	Glycogen synthase	Carbohydrate transport and metabolism [G]	0.95
COG0438	Glycosyltransferase involved in cell wall bisynthesis	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.95
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.95
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.95
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.00 %
Unclassified	root	N/A	19.05 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.95 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.76 %
Unclassified	root	N/A	19.05 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.95 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.24 %
Unclassified	root	N/A	19.05 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.95 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
Unclassified	root	N/A	19.05 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.95 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.05 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	4.76 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.86 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.90 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.90 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	0.95 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.95 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.95 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.05 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4.76 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.86 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.90 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.95 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.95 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.95 %
Actinospicaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.05 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.90 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	1.90 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.90 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.95 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	0.95 %
Phytohabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans	0.95 %
Haladaptatus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus	0.95 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.05 %
unclassified Actinoplanes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes	1.90 %
Micromonospora inyonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inyonensis	1.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.90 %
Phytohabitans rumicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	0.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.95 %
Haladaptatus halobius	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus halobius	0.95 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	0.95 %
Streptomyces nanshensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nanshensis	0.95 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.05 %
Actinoplanes sp. TBRC 11911	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. TBRC 11911	1.90 %
Micromonospora inyonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inyonensis	1.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.90 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	0.95 %
Phytohabitans rumicis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	0.95 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.95 %
Haladaptatus halobius	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus halobius	0.95 %
Streptomyces nanshensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nanshensis	0.95 %
Actinospica	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005434\|Ga0070709_11008374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300005435\|Ga0070714_100889347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300005564\|Ga0070664_102093388	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005591\|Ga0070761_10873216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	568	Open in IMG/M
3300005616\|Ga0068852_100849387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	928	Open in IMG/M
3300005712\|Ga0070764_10204738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1108	Open in IMG/M
3300005764\|Ga0066903_109120296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	501	Open in IMG/M
3300005842\|Ga0068858_102005915	Not Available	572	Open in IMG/M
3300006173\|Ga0070716_101164880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300006175\|Ga0070712_101830780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300006176\|Ga0070765_100299614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1486	Open in IMG/M
3300007076\|Ga0075435_100156206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1919	Open in IMG/M
3300009522\|Ga0116218_1076936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inyonensis	1521	Open in IMG/M
3300009627\|Ga0116109_1035511	Not Available	907	Open in IMG/M
3300009700\|Ga0116217_10195918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora inyonensis	1330	Open in IMG/M
3300010379\|Ga0136449_103302951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	620	Open in IMG/M
3300010396\|Ga0134126_11489913	Not Available	746	Open in IMG/M
3300010396\|Ga0134126_12266674	All Organisms → cellular organisms → Bacteria → Terrabacteria group	592	Open in IMG/M
3300010937\|Ga0137776_1626951	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300011269\|Ga0137392_11644660	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300011332\|Ga0126317_11017295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	823	Open in IMG/M
3300012359\|Ga0137385_10196595	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1762	Open in IMG/M
3300012923\|Ga0137359_10914008	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300012951\|Ga0164300_10317733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300012986\|Ga0164304_10326868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1062	Open in IMG/M
3300012987\|Ga0164307_10523514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	900	Open in IMG/M
3300012989\|Ga0164305_10751737	Not Available	803	Open in IMG/M
3300013105\|Ga0157369_10568579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1171	Open in IMG/M
3300016750\|Ga0181505_10156512	Not Available	539	Open in IMG/M
3300017928\|Ga0187806_1256385	All Organisms → cellular organisms → Bacteria → Terrabacteria group	606	Open in IMG/M
3300017932\|Ga0187814_10340505	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300017937\|Ga0187809_10195799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300017942\|Ga0187808_10133744	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300017943\|Ga0187819_10534395	All Organisms → cellular organisms → Bacteria → Terrabacteria group	667	Open in IMG/M
3300017961\|Ga0187778_10052699	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300017972\|Ga0187781_10759359	All Organisms → cellular organisms → Bacteria → Terrabacteria group	703	Open in IMG/M
3300017972\|Ga0187781_11006400	Not Available	609	Open in IMG/M
3300017972\|Ga0187781_11330581	Not Available	530	Open in IMG/M
3300017973\|Ga0187780_10928751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300017974\|Ga0187777_10402981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	947	Open in IMG/M
3300018006\|Ga0187804_10205854	All Organisms → cellular organisms → Bacteria → Terrabacteria group	841	Open in IMG/M
3300020581\|Ga0210399_10008079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8216	Open in IMG/M
3300021171\|Ga0210405_10324600	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1215	Open in IMG/M
3300021171\|Ga0210405_11323082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. TBRC 11911	528	Open in IMG/M
3300021404\|Ga0210389_10478672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	980	Open in IMG/M
3300021405\|Ga0210387_10244440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1569	Open in IMG/M
3300021406\|Ga0210386_10224514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1597	Open in IMG/M
3300021406\|Ga0210386_11433238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Actinospicaceae → Actinospica	578	Open in IMG/M
3300021474\|Ga0210390_10379872	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300021477\|Ga0210398_10034974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4191	Open in IMG/M
3300024295\|Ga0224556_1049961	Not Available	1034	Open in IMG/M
3300025898\|Ga0207692_10242744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1076	Open in IMG/M
3300025898\|Ga0207692_11189340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M
3300025915\|Ga0207693_10047586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3369	Open in IMG/M
3300025915\|Ga0207693_10319284	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1216	Open in IMG/M
3300025917\|Ga0207660_10267428	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1354	Open in IMG/M
3300025928\|Ga0207700_10313710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1357	Open in IMG/M
3300025929\|Ga0207664_10010171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6640	Open in IMG/M
3300025935\|Ga0207709_11659749	Not Available	531	Open in IMG/M
3300025937\|Ga0207669_10151745	Not Available	1624	Open in IMG/M
3300027107\|Ga0208367_100315	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300027110\|Ga0208488_1080263	Not Available	529	Open in IMG/M
3300027164\|Ga0208994_1028718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	809	Open in IMG/M
3300027297\|Ga0208241_1024240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	917	Open in IMG/M
3300027609\|Ga0209221_1130940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300027765\|Ga0209073_10298511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → unclassified Actinoplanes → Actinoplanes sp. TBRC 11911	638	Open in IMG/M
3300027986\|Ga0209168_10401677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	666	Open in IMG/M
3300028781\|Ga0302223_10111754	Not Available	904	Open in IMG/M
3300028906\|Ga0308309_10440564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1121	Open in IMG/M
3300029882\|Ga0311368_10192451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1624	Open in IMG/M
3300029915\|Ga0311358_11197298	Not Available	505	Open in IMG/M
3300029943\|Ga0311340_10101265	All Organisms → cellular organisms → Bacteria	3170	Open in IMG/M
3300029999\|Ga0311339_10614393	Not Available	1080	Open in IMG/M
3300030043\|Ga0302306_10369327	Not Available	549	Open in IMG/M
3300030490\|Ga0302184_10076117	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus halobius	1563	Open in IMG/M
3300030520\|Ga0311372_11690729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	764	Open in IMG/M
3300030618\|Ga0311354_10577159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytohabitans → Phytohabitans rumicis	1097	Open in IMG/M
3300030740\|Ga0265460_10430101	Not Available	982	Open in IMG/M
3300030743\|Ga0265461_13594694	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031022\|Ga0138301_1807790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300031234\|Ga0302325_10870644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1256	Open in IMG/M
3300031236\|Ga0302324_100764165	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300031543\|Ga0318516_10659691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces nanshensis	595	Open in IMG/M
3300031680\|Ga0318574_10008153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4617	Open in IMG/M
3300031708\|Ga0310686_113614511	All Organisms → cellular organisms → Bacteria → Terrabacteria group	936	Open in IMG/M
3300031715\|Ga0307476_11397652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300031719\|Ga0306917_11601249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300031744\|Ga0306918_10408834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1058	Open in IMG/M
3300031771\|Ga0318546_10184061	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300031823\|Ga0307478_10926781	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031860\|Ga0318495_10522415	Not Available	517	Open in IMG/M
3300031894\|Ga0318522_10214236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	730	Open in IMG/M
3300031938\|Ga0308175_101358995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	792	Open in IMG/M
3300031947\|Ga0310909_11373562	Not Available	566	Open in IMG/M
3300032174\|Ga0307470_10022065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2887	Open in IMG/M
3300032174\|Ga0307470_10537067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	861	Open in IMG/M
3300032770\|Ga0335085_10276997	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300032783\|Ga0335079_12068990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300032805\|Ga0335078_10000784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	48456	Open in IMG/M
3300032895\|Ga0335074_10094586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3955	Open in IMG/M
3300032895\|Ga0335074_10124734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3326	Open in IMG/M
3300032895\|Ga0335074_11203435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300032895\|Ga0335074_11612177	Not Available	506	Open in IMG/M
3300032955\|Ga0335076_10014525	All Organisms → cellular organisms → Bacteria	7913	Open in IMG/M
3300033134\|Ga0335073_11197980	Not Available	762	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.33%
Host-Associated	Host-Associated	6.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.81%
Aquatic	Environmental → Aquatic	9.52%
Plants	Host-Associated → Plants	6.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.38%
Peat	Environmental → Terrestrial → Peat	11.43%
Freshwater	Environmental → Aquatic → Freshwater	8.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.10%
Loam	Environmental → Terrestrial → Soil → Loam	20.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.52%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.14%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.52%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.71%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.76%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.86%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.95%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.95%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300024295	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027107	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095922

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070709_110083742	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	SMSGNRMRVLADWALNATTPAEPTSLVVISAESVPLNVETPRA*
Ga0070714_1008893472	3300005435	Agricultural Soil	MSGNRMRVLADWALNATTPAEPTSLVVISAESVPLNVETPRA*
Ga0070664_1020933881	3300005564	Corn Rhizosphere	MRVLADWALNAATPPEVTSLGLISAESVPLDMGKPPA*
Ga0070761_108732161	3300005591	Soil	GNRLRVATDWTLNAITSPETTSLAVISAKSVSLDVNQPRA*
Ga0068852_1008493872	3300005616	Corn Rhizosphere	MRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA*
Ga0070764_102047381	3300005712	Soil	AMSGNRMRVLTDWTLNGLTSPESTSLAVISAKSVPLDVNQPRA*
Ga0066903_1091202962	3300005764	Tropical Forest Soil	MRVLADWTLNAVTPPEATSFGLISAESVPLDVDKPRA*
Ga0068858_1020059152	3300005842	Switchgrass Rhizosphere	TMSGNRARVLADWTLNATTRPEATSLSVISAESVPLNVEKPSA*
Ga0070716_1011648802	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	NRMRVLADWALNATTPAEPTSLAVISAESVPLNVDKPRA*
Ga0070712_1018307802	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RVLTDWILNGITSPEATSVDVISAESVPLDVDKPPA*
Ga0070765_1002996141	3300006176	Soil	SGNRMRVLTDWTLNGLTSPESTSLAVISAKSVPLDVNQPRA*
Ga0075435_1001562061	3300007076	Populus Rhizosphere	MSGNRMRVLADWAMNATTPAEPTSLGVISAESVPLNVEKPRA*
Ga0116218_10769363	3300009522	Peatlands Soil	YHLSAMSGNRMRVLTDWTLNGITSPESTSLAVISAESVPLDVNQPRA*
Ga0116109_10355111	3300009627	Peatland	RMRVLTDWTLNGITSPDSTSLGAESVPLDVEKPRA*
Ga0116217_101959181	3300009700	Peatlands Soil	MSGNRMRVLTDWTLNGITSPESTSLAVISAESVPLDVNQPRA*
Ga0136449_1033029512	3300010379	Peatlands Soil	RVLTDWTLNGITSPESTSAAVIDAESVPLDVNKPRA*
Ga0134126_114899132	3300010396	Terrestrial Soil	SGNRMRVLADWALNAATPPEVTSLGLISAESVPLDVGKPPA*
Ga0134126_122666742	3300010396	Terrestrial Soil	LADRAMNATTPAEPTSLAVISAESVPLSVDKPRA*
Ga0137776_16269511	3300010937	Sediment	MSGNRMRVLTDWTDNAVTHMEVTSLDVISAKSVPLDVDHPRA*
Ga0137392_116446601	3300011269	Vadose Zone Soil	NRMRVLADWALNATTLAEPTSLAVISAESVPLNVDKPRA*
Ga0126317_110172952	3300011332	Soil	VLADWALNAITPAEATSLGLITSESVPLDPDKPRA*
Ga0137385_101965951	3300012359	Vadose Zone Soil	MSGNRMRVLADWALNATTPAEPTSLAVISAESVPLNVDKPHA*
Ga0137359_109140082	3300012923	Vadose Zone Soil	MSGNRMRVLADGAMNATTPAEPTSLAVISAESVPLNVD*
Ga0164300_103177331	3300012951	Soil	RAPHLSARCGNLMRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA*
Ga0164304_103268682	3300012986	Soil	MSGNRMRVLTDWILNGITSPEATSVDVISAESVPLDVDKPPA*
Ga0164307_105235141	3300012987	Soil	MSGNRMRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA*
Ga0164305_107517371	3300012989	Soil	MAGNRARVFTDWALNAVTPPQATSFGVISSESVPLDVDQPRA*
Ga0157369_105685791	3300013105	Corn Rhizosphere	VGRDRRRYHLSAISGNRMRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA*
Ga0181505_101565121	3300016750	Peatland	GATTCPPCQATGCGVLADWTLNTVTPLEATSFGVISAESVPLDVDNPRA
Ga0187806_12563852	3300017928	Freshwater Sediment	VATDWTLNGITAPELTSLDDIDAKSVPLDVNHPRP
Ga0187814_103405051	3300017932	Freshwater Sediment	RMRVLTDWTLNGITSPEETSLSVISAESVPLDVEKPRA
Ga0187809_101957991	3300017937	Freshwater Sediment	YHLSAMSGNRLRVFTDWSLNLVTAPEPTSLGMISAQSVPLDVNKPPA
Ga0187808_101337441	3300017942	Freshwater Sediment	MRVLTDWTLNGITSPEETSLSVISAESVPLDVEKPRA
Ga0187819_105343951	3300017943	Freshwater Sediment	MSGNRMRVLTDWTLNGITSPEETSLSVISAESVPLDVEKPRA
Ga0187778_100526991	3300017961	Tropical Peatland	RLRVATDWTLNGLTSPELTSLALISAESVPLDVNQPRA
Ga0187781_107593592	3300017972	Tropical Peatland	SAMSGNRLRVLTDWTLNAITSPEPTSVEVVTAESIPLDVNQPRA
Ga0187781_110064001	3300017972	Tropical Peatland	AMSGNRARVLTDWILNVVTPAEVTSLGVISAKSVPLDVDHPRAGP
Ga0187781_113305811	3300017972	Tropical Peatland	RMRVLTDWVLNGVTPAEVTSLGLISAKSVPLDVEHPIM
Ga0187780_109287511	3300017973	Tropical Peatland	MSANRLRVLTDWTLNGITSPESTALEVISAESVPLDVNQPRA
Ga0187777_104029812	3300017974	Tropical Peatland	MGCVNWVLADWTLNATTPAEATLLNVISAESVPLDVNNPRA
Ga0187804_102058541	3300018006	Freshwater Sediment	MSGKRLRVLTDWALDGITSPESTSLAVIDAESVPL
Ga0210399_100080794	3300020581	Soil	MRILADWALNATTLAEPTSLAIISAESVPLNVEKPRA
Ga0210405_103246001	3300021171	Soil	RMGTLADWALNATTLAEPTSLAVISAESVPLNVDWPRA
Ga0210405_113230821	3300021171	Soil	RMRVLADWALNATTPAEPTSLAVISAESVPLNVDKPRA
Ga0210389_104786721	3300021404	Soil	AMSGNRTRVLTDWALNAITPTEATSFGVISAKSVPLDVNKPQT
Ga0210387_102444401	3300021405	Soil	GNRSRVLTDWILNGITSPEPTSLAAIDAQSVPLDVNEPQA
Ga0210386_102245142	3300021406	Soil	MSGNRLRVLTDWTLNGLTSPEATSVNSESVPLDVTKPRA
Ga0210386_114332381	3300021406	Soil	GNRSRVLTDWMLNGITSPEPTSLAAIDAQSVPLDVNEPQA
Ga0210390_103798723	3300021474	Soil	NRSRVLTDWILNGITSPEPTSLAAIDAQSVPLDVNEPQA
Ga0210398_100349744	3300021477	Soil	HLSAMSGNRMRVLTDWTLNGLTSPESTSLAVISAKSVPLDVNQPRA
Ga0224556_10499613	3300024295	Soil	ATGCGVLADWTLNTVTPLEATSFGVISAESVPLDVDNPRA
Ga0207692_102427442	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA
Ga0207692_111893402	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PGDRMRVLTDWILNGITSPEATSVSVISAESVPLDVDRPRA
Ga0207693_100475865	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRVLTDWILNGITSPEATSVSAISAESVPLDVDRPRA
Ga0207693_103192842	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSGNRMRVLADWAMNATTPAEPTSLAVISAESVPLNVEKPRA
Ga0207660_102674281	3300025917	Corn Rhizosphere	SMSGNRMRVLADRAMNATTPAEPTSLAVISAESVPLNVEKPRA
Ga0207700_103137102	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSGNRMRVLADWALNATTPAEPTSLVVISAESVPLNVETPRA
Ga0207664_100101713	3300025929	Agricultural Soil	MSGNRMRVLADWAMNAATPAEPTSLGVISAESVPLNVEKPRA
Ga0207709_116597491	3300025935	Miscanthus Rhizosphere	NAMSGNRMRVFTDWTLNAVTPLEATSLAVVTAESIPLDVNHQRTMD
Ga0207669_101517452	3300025937	Miscanthus Rhizosphere	SGNRMRVLTDWILNGITSPEATSVDVISAESVPLDVDKPRA
Ga0208367_1003153	3300027107	Forest Soil	MQVLADWALNATTPAEPTSLAVISAESVPLNVDKPRA
Ga0208488_10802633	3300027110	Forest Soil	MRVLTDWTLNGITPPEPTALAAIRADSVPLDVNKPQA
Ga0208994_10287183	3300027164	Forest Soil	MSGNRMRVLTDWTLNGITSPEPTSLSAIDAPPVPLDVNEPQA
Ga0208241_10242402	3300027297	Forest Soil	NRLRVLTDWTLNAITSPEPTSLAVISAESVPLDVNQPQP
Ga0209221_11309403	3300027609	Forest Soil	VYSMAGNRGRVLADWALDAAAPPDVTSLGTISAASVPLDPDHPRD
Ga0209073_102985112	3300027765	Agricultural Soil	GNRMRVLADWAMNATTPAEPTSLAVISAESVPLNVEKPRA
Ga0209168_104016771	3300027986	Surface Soil	HLFAMSGNRLRVLSDWTLNAITSPEPTSLAVISAESVPLDINEPQP
Ga0302223_101117542	3300028781	Palsa	GNRMRVLTDWTLNGLTSPESTSLAVISAKSVPLDVNQPRA
Ga0308309_104405642	3300028906	Soil	MRVLTDWTLNGLTSPESTSLAVISAKSVPLDVNQPRA
Ga0311368_101924512	3300029882	Palsa	MRVLTDWSLNAVTPPEATSFSLIDSKSVPLDPSKPRA
Ga0311358_111972981	3300029915	Bog	QATGCGVLADWTLNTVTPLEATSFGVISAESVPLDVDNPRA
Ga0311340_101012651	3300029943	Palsa	MSGNRLRVLTDWTLNGITSPESTSLEVISAESVPLDVNQPRA
Ga0311339_106143933	3300029999	Palsa	GNRLRVATDWALNGITAPESTSLAVITAESVPLDVNQPRA
Ga0302306_103693271	3300030043	Palsa	AMAGNRMRVLTDWSLNAVTPPEATSFSLIDSKSVPLDPSKPRA
Ga0302184_100761173	3300030490	Palsa	SGNRMRVLTDWTLNGITSPDSTSLAVIGAESVPLDVEKPRA
Ga0311372_116907291	3300030520	Palsa	SMSGNRMRVLTDWTLNGITSPDSTSLGAESVPLDVGKPRA
Ga0311354_105771592	3300030618	Palsa	SVSGNRMRVLTDWTLNGITSPDSTSLGAESVPLDVEKPRA
Ga0265460_104301012	3300030740	Soil	VLTDWTLNGITHEEVTSFSVIDAASVPLDVNKPRA
Ga0265461_135946942	3300030743	Soil	SAMSGNRMRVLTDWTLNGLTSPEATSVDVVSAESVPLDVDKPRA
Ga0138301_18077902	3300031022	Soil	GNRLRVLTDWGLNVLTAPEPTSLGVISPQSVPLDVNKPLA
Ga0302325_108706441	3300031234	Palsa	RMRVLTDWTLNGITSPDSTSLGAESVPLDVEKPRA
Ga0302324_1007641651	3300031236	Palsa	VATDWALNGITAPESTSLAVVTAESVPLDVNHPRT
Ga0318516_106596911	3300031543	Soil	AMSGNRMRVLADWALNGATPPEVTSFGLISAESVPLDVDKPRA
Ga0318574_100081534	3300031680	Soil	MSGNRLRVLTDWTLNGIISPESTSLEVISAESVPLDVNKPRA
Ga0310686_1136145113	3300031708	Soil	GNRMRVLADWTLNAVTPPEATSLGSSPVPLDVDKPGA
Ga0307476_113976522	3300031715	Hardwood Forest Soil	HLFAMSGNRLRVLTDWALNGITAPEPTSLGVISAKSVPLDVTQPPA
Ga0306917_116012493	3300031719	Soil	MSGNRMRVLADWALNATTPAEPTSLAVISAEAVPLD
Ga0306918_104088343	3300031744	Soil	ARVATDWAVNTITSPEMTSLGAISAKAVPLDVNHPRD
Ga0318546_101840613	3300031771	Soil	MRVLADWALNGATPPEVTSFGLISAESVPLDVDKPRA
Ga0307478_109267811	3300031823	Hardwood Forest Soil	YSISGNRMRVLADWALNATTPAEPTSLAVISAESVPLNVDKPRA
Ga0318495_105224151	3300031860	Soil	MRVLADWTLNAVTPPEATSFGLISAESVPLDVDKPRA
Ga0318522_102142361	3300031894	Soil	MSGNRMRVLADWALNGATPPEVTSFGLISAESVPLDVDKPRA
Ga0308175_1013589951	3300031938	Soil	MSGNRLRVLADWILNGLTSPEPTSVSVISAESVPLDVDKPRAYEDQ
Ga0310909_113735621	3300031947	Soil	RVLADWTLNAVTPPEATSFGLISAESVPLDVDKPRA
Ga0307470_100220653	3300032174	Hardwood Forest Soil	MRVLTDWILNEITSPEATSVDVISAESVPLDVDKPRA
Ga0307470_105370671	3300032174	Hardwood Forest Soil	YHLNAMSGNRMRVFTDWTLNAVTPLEATSLAVVTAESIPLDVNHQRTMD
Ga0335085_102769971	3300032770	Soil	MAGSRTRVLADWALNAASSPDSTSFGVISATSVPLDPDHPRA
Ga0335079_120689902	3300032783	Soil	MAGNRTRVLADWALNAASSPDSTSFGVISATSVPLDPDHPRA
Ga0335078_1000078417	3300032805	Soil	MSGNRMRVLADWALNTVTPPEATSSGVISAESVPLDVDRPRA
Ga0335074_100945861	3300032895	Soil	MPGNRLRVLTDWMLNGITSPEATSLDVISAQAVPLDPDHPRT
Ga0335074_101247343	3300032895	Soil	VFTDWSLNLVTAPEPTSLGVISARSVPLDVNKPPA
Ga0335074_112034351	3300032895	Soil	YHISVMAGNRLRVLTDWSLNVITPPEATSFDVISAESVPLDVDNPRR
Ga0335074_116121772	3300032895	Soil	AMSGNQTRVLTDWTVNSITAPEPTSLAVISAASVPLDVDNPRA
Ga0335076_100145257	3300032955	Soil	MSGNRARVATDWTLNAITHQELTSVGVITAKSVPLDVESPRP
Ga0335073_111979801	3300033134	Soil	SGNRMRVATDWTLNGITSPELTSLSVISAKSVPLDVNNPRA

Hidden Markov Model


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