Metagenome / Metatranscriptome Family F095939

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095939
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	65 residues
Representative Sequence	VLPIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMAIDGEKGVIAISQTNK
Number of Associated Samples	79
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.81 %
% of genes near scaffold ends (potentially truncated)	91.43 %
% of genes from short scaffolds (< 2000 bps)	96.19 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.095 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.429 % of family members)
Environment Ontology (ENVO)	Unclassified (50.476 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.77% β-sheet: 10.64% Coil/Unstructured: 76.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02668	TauD	7.62
PF00557	Peptidase_M24	4.76
PF03401	TctC	3.81
PF05598	DUF772	1.90
PF10282	Lactonase	1.90
PF13442	Cytochrome_CBB3	1.90
PF09587	PGA_cap	1.90
PF03479	PCC	0.95
PF01436	NHL	0.95
PF00581	Rhodanese	0.95
PF02239	Cytochrom_D1	0.95
PF00903	Glyoxalase	0.95
PF07045	DUF1330	0.95
PF02880	PGM_PMM_III	0.95
PF01361	Tautomerase	0.95
PF00589	Phage_integrase	0.95
PF02417	Chromate_transp	0.95
PF03972	MmgE_PrpD	0.95
PF03162	Y_phosphatase2	0.95
PF01070	FMN_dh	0.95
PF01244	Peptidase_M19	0.95
PF03466	LysR_substrate	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	7.62
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.81
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.95
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.95
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.95
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.95
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	0.95
COG1942	Phenylpyruvate tautomerase PptA, 4-oxalocrotonate tautomerase family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.95
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.95
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.95
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG2365	Protein tyrosine/serine phosphatase Oca4	Signal transduction mechanisms [T]	0.95
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.10 %
Unclassified	root	N/A	21.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.10 %
Unclassified	root	N/A	21.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.10 %
Unclassified	root	N/A	21.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	34.29 %
Unclassified	root	N/A	21.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.95 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	25.71 %
Unclassified	root	N/A	21.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10.48 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	5.71 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.71 %
Unclassified	root	N/A	21.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.81 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.90 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.95 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.95 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.71 %
Unclassified	root	N/A	21.90 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	1.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.95 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.71 %
Unclassified	root	N/A	21.90 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.90 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.95 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.95 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.71 %
Unclassified	root	N/A	21.90 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.90 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.95 %
unclassified Novosphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium	0.95 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	25.71 %
Unclassified	root	N/A	21.90 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1.90 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.95 %
Novosphingobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp.	0.95 %
Polynucleobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	0.95 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10717429	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300005332\|Ga0066388_101285908	Not Available	1259	Open in IMG/M
3300005332\|Ga0066388_103591412	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300005332\|Ga0066388_105590027	Not Available	636	Open in IMG/M
3300005440\|Ga0070705_101306970	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300005559\|Ga0066700_11165136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300005764\|Ga0066903_103185655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887	Open in IMG/M
3300005764\|Ga0066903_103924694	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300006046\|Ga0066652_101169511	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300006047\|Ga0075024_100515969	Not Available	629	Open in IMG/M
3300006173\|Ga0070716_100692910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	777	Open in IMG/M
3300006176\|Ga0070765_101760044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300009137\|Ga0066709_100480545	All Organisms → cellular organisms → Bacteria	1745	Open in IMG/M
3300010047\|Ga0126382_11446208	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300010359\|Ga0126376_10350308	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1308	Open in IMG/M
3300010376\|Ga0126381_101490829	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300010379\|Ga0136449_100909431	All Organisms → cellular organisms → Bacteria → Acidobacteria	1433	Open in IMG/M
3300011270\|Ga0137391_10557322	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300012202\|Ga0137363_11827494	Not Available	500	Open in IMG/M
3300012203\|Ga0137399_10086275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium → unclassified Novosphingobium → Novosphingobium sp.	2396	Open in IMG/M
3300012205\|Ga0137362_11301082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300012211\|Ga0137377_11536884	Not Available	591	Open in IMG/M
3300012361\|Ga0137360_11633496	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300012917\|Ga0137395_11133265	Not Available	552	Open in IMG/M
3300012961\|Ga0164302_10380107	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300015162\|Ga0167653_1035959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	914	Open in IMG/M
3300016270\|Ga0182036_10358037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300016294\|Ga0182041_12191397	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300016319\|Ga0182033_11039468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300016319\|Ga0182033_11050052	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300016341\|Ga0182035_10312531	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300016341\|Ga0182035_10974303	All Organisms → cellular organisms → Bacteria → Acidobacteria	751	Open in IMG/M
3300016357\|Ga0182032_10640454	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300016357\|Ga0182032_10672004	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300016357\|Ga0182032_11686864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300016357\|Ga0182032_12032600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300016371\|Ga0182034_10457440	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300016371\|Ga0182034_10641357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300016387\|Ga0182040_11096992	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300016422\|Ga0182039_10424960	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300016422\|Ga0182039_11864786	Not Available	552	Open in IMG/M
3300016445\|Ga0182038_11193335	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300018085\|Ga0187772_10876867	Not Available	651	Open in IMG/M
3300018431\|Ga0066655_10546670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300018433\|Ga0066667_10687605	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300018468\|Ga0066662_11469157	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	708	Open in IMG/M
3300020581\|Ga0210399_10726018	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300021178\|Ga0210408_10072779	All Organisms → cellular organisms → Bacteria	2689	Open in IMG/M
3300021178\|Ga0210408_10216509	Not Available	1524	Open in IMG/M
3300021406\|Ga0210386_11373449	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300021407\|Ga0210383_11595413	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300021476\|Ga0187846_10181533	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300021560\|Ga0126371_13021226	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300022533\|Ga0242662_10054546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300022726\|Ga0242654_10064828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1071	Open in IMG/M
3300025916\|Ga0207663_10692151	Not Available	807	Open in IMG/M
3300025939\|Ga0207665_11352140	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300026496\|Ga0257157_1007067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1743	Open in IMG/M
3300026540\|Ga0209376_1055622	All Organisms → cellular organisms → Bacteria → Acidobacteria	2243	Open in IMG/M
3300026551\|Ga0209648_10598027	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300027701\|Ga0209447_10140164	Not Available	664	Open in IMG/M
3300027889\|Ga0209380_10190282	Not Available	1204	Open in IMG/M
3300027911\|Ga0209698_11377233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300031545\|Ga0318541_10714510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	559	Open in IMG/M
3300031561\|Ga0318528_10068978	Not Available	1817	Open in IMG/M
3300031564\|Ga0318573_10315314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	838	Open in IMG/M
3300031679\|Ga0318561_10457568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	702	Open in IMG/M
3300031719\|Ga0306917_10365687	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300031719\|Ga0306917_11332299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300031724\|Ga0318500_10728281	Not Available	507	Open in IMG/M
3300031736\|Ga0318501_10609217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter	600	Open in IMG/M
3300031753\|Ga0307477_10727650	Not Available	662	Open in IMG/M
3300031771\|Ga0318546_11005659	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300031771\|Ga0318546_11008321	Not Available	586	Open in IMG/M
3300031833\|Ga0310917_10097152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1891	Open in IMG/M
3300031833\|Ga0310917_10110723	All Organisms → cellular organisms → Bacteria → Proteobacteria	1778	Open in IMG/M
3300031833\|Ga0310917_10193253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1359	Open in IMG/M
3300031833\|Ga0310917_11002942	Not Available	560	Open in IMG/M
3300031835\|Ga0318517_10058736	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300031846\|Ga0318512_10413231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300031890\|Ga0306925_10268307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1839	Open in IMG/M
3300031890\|Ga0306925_10483883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1320	Open in IMG/M
3300031890\|Ga0306925_12058206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300031890\|Ga0306925_12121158	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300031890\|Ga0306925_12237650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300031894\|Ga0318522_10149157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	881	Open in IMG/M
3300031897\|Ga0318520_11106423	Not Available	502	Open in IMG/M
3300031910\|Ga0306923_11011274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	902	Open in IMG/M
3300031912\|Ga0306921_10396116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1612	Open in IMG/M
3300031912\|Ga0306921_10971362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	960	Open in IMG/M
3300031912\|Ga0306921_11563253	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300031912\|Ga0306921_11871218	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300031942\|Ga0310916_10219988	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300031945\|Ga0310913_10868921	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031946\|Ga0310910_11449951	Not Available	527	Open in IMG/M
3300031954\|Ga0306926_11741133	Not Available	710	Open in IMG/M
3300032001\|Ga0306922_10215606	All Organisms → cellular organisms → Bacteria → Proteobacteria	2061	Open in IMG/M
3300032001\|Ga0306922_11933933	Not Available	577	Open in IMG/M
3300032043\|Ga0318556_10765062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300032160\|Ga0311301_11670665	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300032205\|Ga0307472_102308525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300032261\|Ga0306920_102073066	Not Available	795	Open in IMG/M
3300032261\|Ga0306920_103874206	Not Available	546	Open in IMG/M
3300032515\|Ga0348332_11319527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	979	Open in IMG/M
3300032515\|Ga0348332_14592148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1427	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.19%
Aquatic	Environmental → Aquatic	3.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.33%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Sediment	Environmental → Aquatic → Sediment	1.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.90%
Cave	Environmental → Terrestrial → Cave	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.90%
Loam	Environmental → Terrestrial → Soil → Loam	10.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.86%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.95%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.95%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.95%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_107174292	3300004080	Bog Forest Soil	EGHTGPYDSKLFQPALMQGANARQLLENLRTRSAALDTAMTIDGDKGVITVSPTSK*
Ga0066388_1012859082	3300005332	Tropical Forest Soil	GKGQPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTTMAIDGEKGVIAISQTSK*
Ga0066388_1035914121	3300005332	Tropical Forest Soil	GHTGPYDAKLFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVTPASQ*
Ga0066388_1055900271	3300005332	Tropical Forest Soil	QPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTAMAIDGEKGVITASSK*
Ga0070705_1013069701	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	TIGKKAVEKIDVLPLAGKSQPEGHTGAYEAKLFQPFVMQGASARQLLETIRVRTAALDTKMEIAGDKGVITVAQ*
Ga0066700_111651362	3300005559	Soil	VEKVEVLPIAGKGQPEGRTGQPYDPKLFQPFLMQGSSAQQLLASIRSRSAALDTAMEIDGDKGVITVPPTGK*
Ga0066903_1031856552	3300005764	Tropical Forest Soil	PYDAKLFQPDLMRGANARQLLENLRTRSAALDTSMTIDGEKGVIAVSQASR*
Ga0066903_1039246942	3300005764	Tropical Forest Soil	VEVLPIIGKGQPAGHTGPYDSKLFQPALMQGANATQLLQNLRSRSAALNTAMAIDGDKGVITISQAGK*
Ga0066652_1011695112	3300006046	Soil	SVEKVEVLPIAGKGQPVGRTGQPYDPKLFQPFLMEGSSAQQLLEGIRSRSATLDTAMEIDGNRGIITIPPATR*
Ga0075024_1005159691	3300006047	Watersheds	GKKSLEKVEVLPIFGKGQPEGHTGPYDSKLFQPYLMQGSSARKLLEDIRTRSAALDTAMEIDGDKGIITIPPASK*
Ga0070716_1006929102	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KVEVLPIWGKGQPEGHTGPYDAKLFQPYLMQGSSAKKLLEGIRSRSAALDTPMQIDGDKGVITISTTSK*
Ga0070765_1017600442	3300006176	Soil	GPKAVEKIEVLPIIGKGQPQGHTGPYDSKLFQPALMLGANAQKLLEDLRNRSAALDTAMTIDGEKGVITVSQASK*
Ga0066709_1004805452	3300009137	Grasslands Soil	ARFTLGEKSVEKVEVLPIAGKGQPVGRTDQPYDPKLFQPFLLEGSSAQQLLESVRSRSAALDTAMAIDGNRGIITIPPGK*
Ga0126382_114462082	3300010047	Tropical Forest Soil	SIEKVEVLPIIGKGQPAGHTGPYDSKLFQPALMQGANATQLLQNLRSRSAALNTTMAIDGDKGVITVSQTSK*
Ga0126376_103503081	3300010359	Tropical Forest Soil	LARFTFGPKSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLDNLRSRSAALDTVMAVDGEKGIITVSNR*
Ga0126381_1014908291	3300010376	Tropical Forest Soil	KVEVLPIIGKGQPEGHVGPYDSNLFQPALMRGANARQLLENLRTRSAALDTSMTIDGEKGVITVSGR*
Ga0136449_1009094312	3300010379	Peatlands Soil	LKSSAGIVFRANRTDGHTGPYDSKLFQPAPMQGASAQQLLENLGNRSASLDTAMAIDGDKGVITVSSPSK*
Ga0137391_105573221	3300011270	Vadose Zone Soil	KLFQPDLMRGANARQLLENLRTRSAALDTSMTIDGEKGVIAVSQTSK*
Ga0137363_118274941	3300012202	Vadose Zone Soil	TLGPKAVEKVELLPIGRGQPEGQPAQPTLMQGATARQLLENVRSRSAALDTSMAIDGEKGIIAVSQTNK*
Ga0137399_100862751	3300012203	Vadose Zone Soil	VLPIIGKGQPGGHTGPYDSKLFQPALMQGANARQLLGNLRSRSAALDTAMAIDGDKGVITVSQTSK*
Ga0137362_113010822	3300012205	Vadose Zone Soil	LGPKSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLENLGNRSAALGTAMAIDGEKGIITVSNK*
Ga0137377_115368841	3300012211	Vadose Zone Soil	KGQPGGHTGPYDSKLFQPALMEGANARQLLENLRSRSAALNTAMAIDGDKGVITVSQTSK
Ga0137360_116334962	3300012361	Vadose Zone Soil	AGKGQPQGHTGPYDSKVFQPYVMQGAPAQKLLETIRSRTAALDTTMKIEGDKGVITVAAAGK*
Ga0137395_111332652	3300012917	Vadose Zone Soil	SKLFQPDLMRGANARRLLENLRTRSAALDTSMTIDGEKGVIAVSQTSK*
Ga0164302_103801071	3300012961	Soil	GYLARFTLGPKSIEKVEVLPIIGKGQPGGHTGPYDSKLFQPALMQGANAKQLLENLRSRSAALNTAMAIDGDKGVITVSQTSK*
Ga0167653_10359591	3300015162	Glacier Forefield Soil	GQPEGHTGAYDSKLFQPYVMQGASAKQILERVRSSSAALDTPMQIEGDKGVITVQR*
Ga0182036_103580373	3300016270	Soil	RRGDAKSVGVEVLPIIGKGQPEGHTGPYDSKLFQPALIQGANAPRLLEDLRSHSAALETTMAIDGEEGVIAISQTSK
Ga0182041_121913972	3300016294	Soil	LPIVGKGQPEGHTEPYDSKLFQPALMQGANAHELLENLRSRSAALDTAMTIDREKGVITVSQASK
Ga0182033_110394682	3300016319	Soil	GPKSVDKVEVLPIIGKGQPAGHTGPYDSKLFQPALMQGANARQLLENLRNRSAALDTAMMIDGEKGVITVSSK
Ga0182033_110500521	3300016319	Soil	GHTGPYDSKLFQPALMQGANAQKLLEDLRNRSAALDTAMTIDGEKGVITVSQASK
Ga0182035_103125311	3300016341	Soil	AGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0182035_109743032	3300016341	Soil	SVEKVEVLPIIGKGQPEGHTGPYDSKLFQPTLMQGANARQLLENLRSRSAALDTTMAIEGEKGVIAISQTSK
Ga0182032_106404542	3300016357	Soil	AGHAGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0182032_106720041	3300016357	Soil	TGPYDSKLFQPTLMQGADARRLLEDLRTRSAALDTTMAIDGEKGVITVSPTTK
Ga0182032_116868642	3300016357	Soil	FTLGPKSVDKVEVLPIVGKGQPEGHAGPYDSKLFQPALMQGANARQLLENLRNRSAALDTSMTIDGEKGVIAVLSK
Ga0182032_120326001	3300016357	Soil	IEVLPIVGKGQPEGYTGPYDSKLFQPTLMQGANARQLLENLRSRSAALDTAMAIDGEKGVITVSQTSK
Ga0182034_104574402	3300016371	Soil	GGKGQPEGHAGRYDSKLVQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0182034_106413572	3300016371	Soil	MGKKAVEKVEVLPIVGKGQPDGHAGPYDAKLFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0182040_110969922	3300016387	Soil	GYLARFTLGPKSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPALIQGANAPRLLEDLRSHSAALETTMAIDGEEGVIAISQTSK
Ga0182039_104249601	3300016422	Soil	GHAGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0182039_118647862	3300016422	Soil	PYDSKLFQPALMQGANARQLLENLRSRSAALDTAMAIDGEKGIITVSSK
Ga0182038_111933351	3300016445	Soil	YLARFTLGDKSVEKVEVLPIAGKGQPAGHAGRPYDAKLFQPFLMEGSSAQRLLEGVRSRSAALATSMEIDGNKGIITIPPTVK
Ga0187772_108768672	3300018085	Tropical Peatland	MLFQPALMQGANAHQRLESFRSRSAALDTTMAIDGEKGVIAISPTNK
Ga0066655_105466701	3300018431	Grasslands Soil	SVEKVEVLPIAGKGQPVGRTGQPYDPKLFQPFLMEGSNSQQLLESIRSRSAALDTAMEIDGDKGIITIPSASK
Ga0066667_106876051	3300018433	Grasslands Soil	KSVEKVEVLPIAGKGQPVGRTDQPYDPKLFQPFLMEGSSAQQLLESVRSRSAALDTAMAIDGNRGIITIPPASK
Ga0066662_114691572	3300018468	Grasslands Soil	LPIVGKGQPEGHTGPYDSKLFQPYVMQGANAKQVLERVRASSAALDTPMQIEGDKGVITVRK
Ga0210399_107260181	3300020581	Soil	GHVGSYDSKLFQPDLMRGANARQLLENLRTRSAALDTSMTIDGEKGVVMVSGR
Ga0210408_100727791	3300021178	Soil	TLGEKSVEKVEVLPIAGKGQPAGRTGQPYDAKLFQPYLMEGSSAQQLLEGVRSRSAALDTAMEIDGNKGVITIPLASK
Ga0210408_102165091	3300021178	Soil	EGHTGPYDAKLFQPYLMQGEDARQLLEKIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0210386_113734492	3300021406	Soil	IEKVEVLPIIGKGQPGGHTGPYDSKLFQPALMQGANAQQLLETLRSRSAALGTAMAIDGDKGVITVSPTSK
Ga0210383_115954131	3300021407	Soil	LFQPALMQGSNARQLLENLRTRSAALDTAMAIDGDKGVITVSPTSK
Ga0187846_101815332	3300021476	Biofilm	GRHTGPYDSKLFQPALMQGANAHQLLENLRSRSAALNTAMAIEGEKGVITVSSK
Ga0126371_130212262	3300021560	Tropical Forest Soil	RRTHDSKLFQPALMRGTDARALLEDLRARSAALDTSMTIDGEKAVIAASQTGK
Ga0242662_100545461	3300022533	Soil	KSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPTLMQGADAQRLLENLRSRSAALDTPMAIDGEKGVITVSQTSR
Ga0242654_100648281	3300022726	Soil	GKGQPEGHTGPYDSKLFQPTLMQGADAQRLLENLRSRSAALDTPMAIDGEKGVITVSQTS
Ga0207663_106921511	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LARFTLGPKSVEKIEVLPIAGKGQPDGHTGPYDAKLFQPYLMQGANAKKLLEGVRSRSAALDTPMQIEGDKGVITVSAASK
Ga0207665_113521401	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	KKSVEKVEVLPIWGKGQPEGHTGPYDAKLFQPYLMQGSSAKKLLEGIRSRSAALDTPMQIDGDKGVITISTTSK
Ga0257157_10070671	3300026496	Soil	EGLTGPYDSKLFQPALMQGANARQLLENLGNRSAALGTAMAIDGEKGIITVSNK
Ga0209376_10556221	3300026540	Soil	KSVEKVEVLPIAGKGQPVGRTGQPYDPKLFQPFLMEGSNSQQLLESIRSRSAALDTAMEIDGNKGIITIPSASK
Ga0209648_105980271	3300026551	Grasslands Soil	GKGQPEGHTGPYDSKLFQPALMQAANARQLLQNLRSRSAALDTTMAIDGEKGIITVSSK
Ga0209447_101401643	3300027701	Bog Forest Soil	TGPYDSKLFQPALMQGANARQLLESLRSRSAALDTTMSIDGEKGVIAISQTNK
Ga0209380_101902822	3300027889	Soil	KGQPEGHTGPYDAKLFQPYLMQGEDARQLLEKIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0209698_113772331	3300027911	Watersheds	YLARFTIGKKSVEKIEVLPIAGKGQPDGHTGPYDSKLFQPYVVQGASAKQILERVRSGSAALDTTMQIEGDKGVITVQR
Ga0318541_107145101	3300031545	Soil	SKLFQPDLMRGANARQLLENLRARSAALDTSMTIDGEKGVIAVSQASR
Ga0318528_100689781	3300031561	Soil	PEGHTGPYDSKLFQPALMQGANAHQLLENLRSRSAALNTTMAIEGEKGVIAISQTSK
Ga0318573_103153142	3300031564	Soil	LARFTLGPKSVEKIEVLPIVGKGQPEGHVGPYDSKLFQPDLMRGANARQLLENLRTRSAALDTAMTIDGEKGVIAVSQASR
Ga0318561_104575682	3300031679	Soil	VLPIVGKGQPEGHVGPYDSKLFQPDLMRGANARQLLENLRTRSAALDTAMTIDGEKGVIAVSQASR
Ga0306917_103656871	3300031719	Soil	LPIIGKGQPEAHVGPYDSKLFQPALMRGTDARALLEDLRARSAALDTSMMIDGEKGVIAASQTGK
Ga0306917_113322991	3300031719	Soil	VEKVEVLPIVGKGQPDGHAGPYDAKLFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0318500_107282812	3300031724	Soil	TGPYDSKLFQPTLMQGADARRLLEDLRNRSAALDTTMAIDGEKGVVTVSPTTK
Ga0318501_106092171	3300031736	Soil	SKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0307477_107276503	3300031753	Hardwood Forest Soil	KLFQPALMQGANARQLLENLRRRSAALDTAMAIDGEKGIITVSSK
Ga0318546_110056591	3300031771	Soil	GPYDSKLFQPALMRGTDAQALLEDLRARSTALDTSMTIDGEKGVIAASQTGK
Ga0318546_110083211	3300031771	Soil	VLPIVGKGQPDGHAGPYDAKLFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0310917_100971521	3300031833	Soil	SRCRLPIIGKGQPEGHVGPYDSKLFQPALMRGTDAQALLEDLRARSTALDTSMTIDGEKGVIAASQTGK
Ga0310917_101107231	3300031833	Soil	RFTLGPKSVDKVEVLPIVGKGQPEGHAGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0310917_101932532	3300031833	Soil	SKLFQPDLMRGANARQLLENLRTRSAALDTAMTIDGEKGVIAVSQASR
Ga0310917_110029421	3300031833	Soil	VEVLPIIGKGQPEGHTGPYDSKLFQPALMQGANAHQLLENLRSRSAALDTSMAIDGERGVISVSQTSK
Ga0318517_100587361	3300031835	Soil	SVEKIEVLPIVGKGQPEGHVGPYDSKLFQPDLMRGANARQLLENLRTRSAALDTSMTIDGEKGVIAVSQASRWSSVKNPVFRPE
Ga0318512_104132312	3300031846	Soil	PKSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMAIDGERGVISISQTSK
Ga0306925_102683072	3300031890	Soil	LPIIGKGQPEGHVGPYDSKLFQPALMRGTDAQALLEDLRARSTALDTSMTIDGEKGVIAASQTGK
Ga0306925_104838831	3300031890	Soil	MKISAGLTTGRRGDAKSVGVEVLPIIGKGQPEGHTGPYDSKLFQPALIQGANAPRLLEDLRSHSAALETTMAIDG
Ga0306925_120582062	3300031890	Soil	RFTLGPKSVEKIEVLPIVGKGQPEGHVGPYDSKLFQPDLMRGANARQLLENLRTRSAALDTAMTIDGEKGVIAVSQASR
Ga0306925_121211582	3300031890	Soil	LGPKSVEKVEVLPIIGKGQPEGHTGPYDSKLFQPTLMQGANARQLLENLRSRSAALDTTMAIEGEKGVIAISQTSK
Ga0306925_122376501	3300031890	Soil	LGPKSVDKVEVLPIVGKGQPEGHAGPYDSKLFQPALMQGANVRQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0318522_101491572	3300031894	Soil	FTLGPKSVEKIEVLPIVGKGQPEGHVGPYDSKLFQPDLMRGANARQLLENLRARSAALDTSMTIDGEKGVIAVSQASR
Ga0318520_111064232	3300031897	Soil	DSKLFQPTLMQGADARRLLEDLRNRSAAFDTTMAIDGEKGVITVSPTK
Ga0306923_110112741	3300031910	Soil	YLARFTLGPKAVEKIEVLPIIGKGQPAGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALGTAMAIDGDKGVITVSQAGK
Ga0306921_103961163	3300031912	Soil	GKKAVEKVEVLPIIGKGQPEGHTGPYDAKAFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0306921_109713621	3300031912	Soil	SVEKVEVLPIIGKGQPEGHTGPYDSKLFQPALMQGADAHRLLENLRSRSAALDTTLAIDGEKGVIAVSQTSK
Ga0306921_115632532	3300031912	Soil	VLPIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMAIDGEKGVIAISQTNK
Ga0306921_118712181	3300031912	Soil	RFTLGPKSVEKIEVLPIVGKGQPEGHTGPYDSKLFQPTLMQGADARRLLEDLRNRSAAFDTTMAIDGEKGVITVSPTK
Ga0310916_102199882	3300031942	Soil	LPIIGKGQPEGHVGPYDSKLFQPALMRGTDARALLEDLRARSAALDTSMMIDGEKGVIAASQTGK
Ga0310913_108689211	3300031945	Soil	PYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVIAVSSK
Ga0310910_114499511	3300031946	Soil	PIVGKGQPADHTGPYDSKLFQPTLMQGADARRLLEDLRNRSAAFDTTMAIDGEKGVITVSPTK
Ga0306926_117411331	3300031954	Soil	KLFQPALMQGEEARKLLENLRARSAALDTKMEIDGDKGVITVAPASQ
Ga0306922_102156063	3300032001	Soil	LPIIGKGQPEGHTGPYDSKLFQPALMQGANAHQLLENLRSRSAALNTTMAIEGEKGVIAISQTSK
Ga0306922_119339331	3300032001	Soil	PIIGKGQPEGHTGPYDSKLFQPALMQGANARQLLENLRSRSAALDTSMTIDGEKGVITVSSK
Ga0318556_107650622	3300032043	Soil	YDAKLFQPALMQGEEARKLLENIRTRSAALDTKMEIDGDKGVITVAPASQ
Ga0311301_116706651	3300032160	Peatlands Soil	TDGHTGPYDSKLFQPAPMQGASAQQLLENLGNRSASLDTAMAIDGDKGVITVSSPSK
Ga0307472_1023085252	3300032205	Hardwood Forest Soil	KVEVLPIAGKGQPAGRTGQPYDPKLFQPFLMEGASAQQLLESVRSRSAALDTAMEIDGNRGVITIPPASK
Ga0306920_1020730663	3300032261	Soil	VLPIIGKGQPEGHTGPYDSKLFQPALMQGANAHQLLENLRSRSAALNTTMAIEGEKGVIAISQTSK
Ga0306920_1038742061	3300032261	Soil	PIVGKGQPEGHTGPYDSKLFQPTLMQGADARRLLEDLRNRSGALDTTMAIDGEKGVITVSQTNK
Ga0348332_113195271	3300032515	Plant Litter	TGPYDSKLFQPTLMQGADAQRLLENLRSRSAALDTPMAIDGEKGVITVSQTSR
Ga0348332_145921482	3300032515	Plant Litter	VEVLPIIGKGQPEGHTGPYDSKLFQPALMQGANANRLLESVRAHSAALDTTMAIDGEKGVIAVAQTSK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095939

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences