Metagenome / Metatranscriptome Family F096095

Basic Information
Family ID	F096095
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	58 residues
Representative Sequence	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP
Number of Associated Samples	104
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.33 %
% of genes near scaffold ends (potentially truncated)	38.10 %
% of genes from short scaffolds (< 2000 bps)	83.81 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (79.048 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.476 % of family members)
Environment Ontology (ENVO)	Unclassified (36.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.905 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 44.83% β-sheet: 0.00% Coil/Unstructured: 55.17%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF03401	TctC	41.90
PF01343	Peptidase_S49	13.33
PF01972	SDH_sah	12.38
PF02091	tRNA-synt_2e	2.86
PF05175	MTS	1.90
PF09413	DUF2007	1.90
PF00535	Glycos_transf_2	0.95
PF05164	ZapA	0.95
PF00348	polyprenyl_synt	0.95
PF02129	Peptidase_S15	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	51.43
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	41.90
COG0752	Glycyl-tRNA synthetase, alpha subunit	Translation, ribosomal structure and biogenesis [J]	2.86
COG0142	Geranylgeranyl pyrophosphate synthase	Coenzyme transport and metabolism [H]	0.95
COG3027	Cell division protein ZapA, inhibits GTPase activity of FtsZ	Cell cycle control, cell division, chromosome partitioning [D]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.05 %
Unclassified	root	N/A	20.95 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	77.14 %
Unclassified	root	N/A	20.95 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.76 %
Unclassified	root	N/A	20.95 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.24 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.81 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	3.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	3.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.95 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.95 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3.81 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.95 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.95 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001661\|JGI12053J15887_10007939	Not Available	5721	Open in IMG/M
3300002074\|JGI24748J21848_1038381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	605	Open in IMG/M
3300002568\|C688J35102_118811634	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300004114\|Ga0062593_100636547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1026	Open in IMG/M
3300004157\|Ga0062590_102233847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300004643\|Ga0062591_100844225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300004643\|Ga0062591_101112622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	762	Open in IMG/M
3300005147\|Ga0066821_1000175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1950	Open in IMG/M
3300005159\|Ga0066808_1018982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300005162\|Ga0066814_10004645	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300005163\|Ga0066823_10002961	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2080	Open in IMG/M
3300005165\|Ga0066869_10001540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2561	Open in IMG/M
3300005330\|Ga0070690_100874224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300005334\|Ga0068869_101655536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300005338\|Ga0068868_101592233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	613	Open in IMG/M
3300005347\|Ga0070668_100663110	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300005354\|Ga0070675_100732486	All Organisms → cellular organisms → Bacteria → Proteobacteria	902	Open in IMG/M
3300005355\|Ga0070671_100521725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300005356\|Ga0070674_101398100	All Organisms → cellular organisms → Bacteria → Proteobacteria	626	Open in IMG/M
3300005365\|Ga0070688_100373721	All Organisms → cellular organisms → Bacteria → Proteobacteria	1049	Open in IMG/M
3300005367\|Ga0070667_100242244	Not Available	1610	Open in IMG/M
3300005438\|Ga0070701_10333958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300005440\|Ga0070705_100173165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1455	Open in IMG/M
3300005457\|Ga0070662_101326138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300005468\|Ga0070707_101975185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300005535\|Ga0070684_100198711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1826	Open in IMG/M
3300005539\|Ga0068853_100073844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2974	Open in IMG/M
3300005545\|Ga0070695_100603837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	862	Open in IMG/M
3300005547\|Ga0070693_100127582	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300006038\|Ga0075365_10359542	All Organisms → cellular organisms → Bacteria → Proteobacteria	1026	Open in IMG/M
3300006042\|Ga0075368_10015375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2839	Open in IMG/M
3300006163\|Ga0070715_10769539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	581	Open in IMG/M
3300006178\|Ga0075367_10063850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2202	Open in IMG/M
3300006353\|Ga0075370_10575452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	682	Open in IMG/M
3300006605\|Ga0074057_12332151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2174	Open in IMG/M
3300012987\|Ga0164307_10080369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1979	Open in IMG/M
3300012988\|Ga0164306_10578124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	877	Open in IMG/M
3300013297\|Ga0157378_12650361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300014325\|Ga0163163_12611890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300017965\|Ga0190266_10016779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2044	Open in IMG/M
3300018027\|Ga0184605_10069601	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300018051\|Ga0184620_10006222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2534	Open in IMG/M
3300018055\|Ga0184616_10017110	All Organisms → cellular organisms → Bacteria → Proteobacteria	2166	Open in IMG/M
3300018066\|Ga0184617_1044849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300018067\|Ga0184611_1001649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4859	Open in IMG/M
3300018073\|Ga0184624_10005351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4143	Open in IMG/M
3300018074\|Ga0184640_10140163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1073	Open in IMG/M
3300018429\|Ga0190272_12112914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300018465\|Ga0190269_10065169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1708	Open in IMG/M
3300019356\|Ga0173481_10114291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1060	Open in IMG/M
3300019361\|Ga0173482_10229269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300019876\|Ga0193703_1062672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300020001\|Ga0193731_1082031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	840	Open in IMG/M
3300021078\|Ga0210381_10250196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300021082\|Ga0210380_10184277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	941	Open in IMG/M
3300022756\|Ga0222622_10132490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1584	Open in IMG/M
3300025901\|Ga0207688_10247999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1078	Open in IMG/M
3300025903\|Ga0207680_10277614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1163	Open in IMG/M
3300025914\|Ga0207671_10183306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1630	Open in IMG/M
3300025916\|Ga0207663_10605425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	861	Open in IMG/M
3300025918\|Ga0207662_10000424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18665	Open in IMG/M
3300025921\|Ga0207652_10415240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1214	Open in IMG/M
3300025932\|Ga0207690_10743920	Not Available	808	Open in IMG/M
3300025934\|Ga0207686_10355740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1104	Open in IMG/M
3300025981\|Ga0207640_10463235	Not Available	1047	Open in IMG/M
3300025986\|Ga0207658_11272083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300026116\|Ga0207674_10090798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3046	Open in IMG/M
3300026142\|Ga0207698_11040405	Not Available	830	Open in IMG/M
3300026995\|Ga0208761_1021088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300027480\|Ga0208993_1026791	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300027546\|Ga0208984_1001700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3644	Open in IMG/M
3300027866\|Ga0209813_10043220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1380	Open in IMG/M
3300027903\|Ga0209488_10856223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300028379\|Ga0268266_11826490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300028380\|Ga0268265_10896363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	871	Open in IMG/M
3300028592\|Ga0247822_10850179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300028708\|Ga0307295_10063408	Not Available	966	Open in IMG/M
3300028710\|Ga0307322_10010487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2044	Open in IMG/M
3300028713\|Ga0307303_10006464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1973	Open in IMG/M
3300028714\|Ga0307309_10064531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	821	Open in IMG/M
3300028755\|Ga0307316_10274828	Not Available	614	Open in IMG/M
3300028768\|Ga0307280_10009266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2642	Open in IMG/M
3300028782\|Ga0307306_10092388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	799	Open in IMG/M
3300028784\|Ga0307282_10050675	Not Available	1854	Open in IMG/M
3300028787\|Ga0307323_10100148	Not Available	1039	Open in IMG/M
3300028811\|Ga0307292_10080495	Not Available	1260	Open in IMG/M
3300028828\|Ga0307312_10352623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	963	Open in IMG/M
3300028872\|Ga0307314_10027150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1339	Open in IMG/M
3300028880\|Ga0307300_10062248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1074	Open in IMG/M
3300028885\|Ga0307304_10227458	Not Available	806	Open in IMG/M
3300028889\|Ga0247827_11037786	Not Available	559	Open in IMG/M
3300030904\|Ga0308198_1043151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	681	Open in IMG/M
3300030993\|Ga0308190_1067272	Not Available	726	Open in IMG/M
3300031058\|Ga0308189_10200180	Not Available	723	Open in IMG/M
3300031094\|Ga0308199_1054455	Not Available	791	Open in IMG/M
3300031099\|Ga0308181_1043483	Not Available	828	Open in IMG/M
3300031152\|Ga0307501_10104919	Not Available	719	Open in IMG/M
3300031184\|Ga0307499_10268215	Not Available	551	Open in IMG/M
3300031421\|Ga0308194_10161068	Not Available	699	Open in IMG/M
3300031547\|Ga0310887_10562030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031854\|Ga0310904_10442972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	860	Open in IMG/M
3300031943\|Ga0310885_10408052	Not Available	725	Open in IMG/M
3300032205\|Ga0307472_100222381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1456	Open in IMG/M
3300034147\|Ga0364925_0292368	Not Available	609	Open in IMG/M
3300034644\|Ga0370548_028721	Not Available	896	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.33%
Host-Associated	Host-Associated	26.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.81%
Plants	Host-Associated → Plants	26.67%
Aquatic	Environmental → Aquatic	9.52%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.38%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.57%
Sediment	Environmental → Aquatic → Sediment	7.62%
Roots	Host-Associated → Plants → Roots	5.71%
Freshwater	Environmental → Aquatic → Freshwater	1.90%
Floodplain	Environmental → Terrestrial → Floodplain	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.62%
Loam	Environmental → Terrestrial → Soil → Loam	15.24%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.52%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.62%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.90%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.10%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.52%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.62%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.76%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.76%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.48%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.76%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.81%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.86%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.95%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12053J15887_100079394	3300001661	Forest Soil	MIIQSLVTAFTIAFLATVVFGHVLLLRAAFAPTNNPKSGKAAERPSGRAPIAGAGIAA*
JGI24748J21848_10383813	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	QSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAS*
C688J35102_1188116342	3300002568	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP*
Ga0062593_1006365473	3300004114	Soil	MIVQSLVTAFAFAFLATAALGHLLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0062590_1022338473	3300004157	Soil	MIVQSLVTAFTIAFLATAMLGHVLLLRAVFVPANNPKSGRAAKRASGRTPIAGPGIAA*
Ga0062591_1008442251	3300004643	Soil	MIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRTPISGAGIAP*
Ga0062591_1011126223	3300004643	Soil	MIVQSLVTAFAFAFLATAALGHLLLLQGTFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0066821_10001752	3300005147	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAS*
Ga0066808_10189821	3300005159	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGI
Ga0066814_100046452	3300005162	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP*
Ga0066823_100029611	3300005163	Soil	MIVQSLVTAFAFAFVATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0066869_100015405	3300005165	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0070690_1008742241	3300005330	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPIAGAGIAS*
Ga0068869_1016555362	3300005334	Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPGNNPKSGKAAERPSGRAPITGAGIAP*
Ga0068868_1015922333	3300005338	Miscanthus Rhizosphere	EGVMIVQSLVTAFAFAFLATAALGHVLLLQVAFAPSNNPKSGKAAERPSGRAPITGAGIAP*
Ga0070668_1006631102	3300005347	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQVAFAPSNNPKSGKAAERPSGRAPITGAGIAS*
Ga0070675_1007324862	3300005354	Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQVAFAPSNNPKSGKAAERPSGRAPITGAGIAP*
Ga0070671_1005217253	3300005355	Switchgrass Rhizosphere	TIAFLATAMLGHVLLLRAVFVPANNPKSGRAAKRASGRTPIAGPGIAA*
Ga0070674_1013981002	3300005356	Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAS*
Ga0070688_1003737213	3300005365	Switchgrass Rhizosphere	MIVQSLVTAFTIAFLATAMFGHVLLLRAVLVPANNPKSGRAAKRASGRTPIAGPGIAA*
Ga0070667_1002422441	3300005367	Switchgrass Rhizosphere	SLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP*
Ga0070701_103339581	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFTIAFLATAMLGHVLLLRAVLVPANNPKSGRAAKRASGRTPIAGPGIAA*
Ga0070705_1001731653	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0070662_1013261381	3300005457	Corn Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP*
Ga0070707_1019751851	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSDRAPITGAGIAP
Ga0070684_1001987111	3300005535	Corn Rhizosphere	VQSLVTAFTIAFLATAMLGHVLLLRAVFVPANNPKSGRAAKRASGRTPIAGPGIAA*
Ga0068853_1000738446	3300005539	Corn Rhizosphere	MIVQSLVTAFAFAFLATAALGHLLLLQATFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0070695_1006038371	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	SGPQLEGVMIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP*
Ga0070693_1001275821	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFAFAFVATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGA
Ga0075365_103595422	3300006038	Populus Endosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPIAGAGIAT*
Ga0075368_100153751	3300006042	Populus Endosphere	VMIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPIAGAGIAP*
Ga0070715_107695391	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP*
Ga0075367_100638503	3300006178	Populus Endosphere	MIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNDPKSGKAAQRPSGRTPISGAGIAP*
Ga0075370_105754523	3300006353	Populus Endosphere	PQVEGVMIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRTPISGAGIAP*
Ga0074057_123321514	3300006605	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQVAFAPSNNPKSGKAAERPSGRAPIAGAGIAS*
Ga0164307_100803693	3300012987	Soil	MIVQSLVTAFAFAFLATAALGHMLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP*
Ga0164306_105781242	3300012988	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP*
Ga0157378_126503612	3300013297	Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGNAAERPSGRAPITGAGIAT*
Ga0163163_126118901	3300014325	Switchgrass Rhizosphere	MIVQSLVTAFAFAFVATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITG
Ga0190266_100167792	3300017965	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP
Ga0184605_100696013	3300018027	Groundwater Sediment	MIVQSLVMAFTIAFIATAVLGHVLLLRAALVPAKNPKSGRAAERPSGRTPIAGAGIAA
Ga0184620_100062223	3300018051	Groundwater Sediment	MIVQSLVMAFTIAFVATAVLGHVLPLRAAFVPAKNPKSGRAAERPSGRTPIAGAGIAA
Ga0184616_100171102	3300018055	Groundwater Sediment	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0184617_10448491	3300018066	Groundwater Sediment	MIVQALVTAFAFAFLATAALGHVLLLQAAFAPRDNPKSGKAAQRPSGRAPITGAGIAP
Ga0184611_10016492	3300018067	Groundwater Sediment	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0184624_100053513	3300018073	Groundwater Sediment	MIVQSLVTAFAFACLATAALGHVLLLQAAFAPRNNPKSGKAAQRPSGRAPITGAGIAP
Ga0184640_101401632	3300018074	Groundwater Sediment	MIVQSLVTAFAFAFLATAALGHMLLLQAAFAPSNNPKSGKATERPSGRAPITGV
Ga0190272_121129141	3300018429	Soil	MIVQSLVTAFAFACLATAALGHVLLLQAAFAPSNNPKSGKAAERRSGRAPITGVGIAPQGRQRLARDR
Ga0190269_100651693	3300018465	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPLGRAPITSVGIAP
Ga0173481_101142913	3300019356	Soil	MIVQSLVTAFTIAFLATAMLGHVLLLRAVFVPANNPKSGRAAKRASGRTPIAGPGIAA
Ga0173482_102292691	3300019361	Soil	MIVQSLVTAFAFAFLATAALGHLLLLQGTFAPSNNPKSGKAAQRPSGRAPITGAGI
Ga0193703_10626722	3300019876	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0193731_10820312	3300020001	Soil	MIVQSLVMAFTIAFVATAVLGHVLLLRAAFVPAKNPKSGRAAERPSGRTPIAGAGIAA
Ga0210381_102501962	3300021078	Groundwater Sediment	MIVQSLVTAFAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0210380_101842772	3300021082	Groundwater Sediment	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAT
Ga0222622_101324902	3300022756	Groundwater Sediment	MIVQSLVTAFAFAFLATAALGHMLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0207688_102479991	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFTIAFLATAMLGLVLLLRAVFVPANNPKSGRAAKRASGRTPIAGPGIAA
Ga0207680_102776142	3300025903	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHMLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP
Ga0207671_101833063	3300025914	Corn Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAT
Ga0207663_106054252	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MIVQSLVTAFAFAFVATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP
Ga0207662_100004243	3300025918	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQVAFAPSNNPKSGKAAERPSGRAPITGAGIAS
Ga0207652_104152403	3300025921	Corn Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPIAGAGIAT
Ga0207690_107439203	3300025932	Corn Rhizosphere	EGAMIVQSLVTAFTIAFLATAMFGHVLLLRAIFVPANNRKSGRAAERASGRTPIAGPGIA
Ga0207686_103557402	3300025934	Miscanthus Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAS
Ga0207640_104632351	3300025981	Corn Rhizosphere	DERSGPQLEGVMIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0207658_112720832	3300025986	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHMLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAS
Ga0207674_100907986	3300026116	Corn Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPRNNPKPGKAAERPSGRAPITGAGIAS
Ga0207698_110404051	3300026142	Corn Rhizosphere	FAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGAGIAP
Ga0208761_10210882	3300026995	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAEGPSGRAPITGAGIAP
Ga0208993_10267913	3300027480	Forest Soil	MIVQSLVTAFTIAFLATAVFGHVLLLRAAFAPTNNAKSGKAAERPSGRAPIAGAGIAA
Ga0208984_10017005	3300027546	Forest Soil	MIIQSLVTAFTIAFLATVVFGHVLLLRAAFAPTNNPKSGKAAERPSGRAPIAGAGIAA
Ga0209813_100432202	3300027866	Populus Endosphere	MIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRTPISGAGIAP
Ga0209488_108562233	3300027903	Vadose Zone Soil	MIVQSLVMAFTIAFIATAVLGHVLLLRAALVPAKNPKSGRAAERPSGRTPIASAGIAA
Ga0268266_118264902	3300028379	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHLLLLQGTFAPSNNPKSGKAAQRPSGRAPIT
Ga0268265_108963633	3300028380	Switchgrass Rhizosphere	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP
Ga0247822_108501791	3300028592	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAG
Ga0307295_100634082	3300028708	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPRNNPKSGKAAQRPSGRAPITGAGIAP
Ga0307322_100104872	3300028710	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITCAGIAP
Ga0307303_100064641	3300028713	Soil	SGPQLEGAMIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0307309_100645311	3300028714	Soil	MIVQSLVMAFTIAFIATAVLGHVLLLRAAFVPAKNPKSGRAAERPSGRTPIAGAGIAA
Ga0307316_102748281	3300028755	Soil	LVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGVGIAP
Ga0307280_100092661	3300028768	Soil	AMIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0307306_100923882	3300028782	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGA
Ga0307282_100506753	3300028784	Soil	MIVQSLVTAFAFAFLAIAALGHVLLLQAALAPSNNPKSGKTAERPSGRAPITGAGIAP
Ga0307323_101001483	3300028787	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGVGIAP
Ga0307292_100804951	3300028811	Soil	EGAMIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIA
Ga0307312_103526233	3300028828	Soil	MIVQALVTAFAFAFLATAALGHILLLQAAFAPSNNPKSGKAAERPSGRAPITSVGIAP
Ga0307314_100271502	3300028872	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGVGIAP
Ga0307300_100622481	3300028880	Soil	MIVQSLVMAFTIAFIATAVLGHVLLLRAAFVPAKNPKSGRAAERPSGRTPIAGAGI
Ga0307304_102274581	3300028885	Soil	MIVQALVTAFAFAFLATAALGHILLLQAAFAPSNNPKSGKAAERPSGRAPITGVGIAP
Ga0247827_110377863	3300028889	Soil	LEGVMIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0308198_10431513	3300030904	Soil	QLEGAMIVQSLVMAFTIAFIATAVLGHVLLLRAAFVPAKNPKSGRAAERPSGRTPIAGAGIAA
Ga0308190_10672723	3300030993	Soil	VQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0308189_102001801	3300031058	Soil	AFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0308199_10544551	3300031094	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP
Ga0308181_10434833	3300031099	Soil	QLEGVMIVQSLVTAFAFAFLATAALGHVLLLQAAFAPGNNPKSGKAAERPSGRAPITGAGIAP
Ga0307501_101049191	3300031152	Soil	ATAFAFAFLATAALGHGLLLQAALAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0307499_102682152	3300031184	Soil	MIIQSLVTAFAFAFLATALGHVLLQAAFAPSNNPKSGKAAERPSGRAPITGAGIAP
Ga0308194_101610683	3300031421	Soil	RDERSGPQLEGVMIVQSLVTAFAFAFVATAALGHVLLLQAAFAPSNNPKSGKTAERPSGRAPITGAGIAP
Ga0310887_105620302	3300031547	Soil	MIVQSLVTAFTIAFLATAMFGHVLLLRAVLVPANNPKSGRAAKRASGRTPIAGPGIAA
Ga0310904_104429722	3300031854	Soil	MIVQSLVTAFTIAFLATAMLGHVLLLRAVFVPANNPKPGRAAERASGRTPIAGPGIAA
Ga0310885_104080521	3300031943	Soil	MIVQSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKSGKAAQRPSGRAPITGARIAP
Ga0307472_1002223813	3300032205	Hardwood Forest Soil	MIVQSLVTAFAFAFLAPAALGHVLLLQAAFAPSNNPKSGKAAKRPSGRAPITGAGIAP
Ga0364925_0292368_3_170	3300034147	Sediment	QSLVTAFAFAFLATAALGHVLLLQAAFAPSNNPKWGKAAQRPSGRAPITGAGIAP
Ga0370548_028721_695_871	3300034644	Soil	MIVQSLVTAFAFAFLATAVLGHVLLLQAAFAPSNNPKSGKAAERPLGRAPITGVGIAP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096095

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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