Metagenome / Metatranscriptome Family F096119

Basic Information
Family ID	F096119
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	60 residues
Representative Sequence	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Number of Associated Samples	98
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	43.81 %
% of genes from short scaffolds (< 2000 bps)	97.14 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (66.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.238 % of family members)
Environment Ontology (ENVO)	Unclassified (23.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.238 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 13.79% Coil/Unstructured: 86.21%
Feature Viewer

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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07676	PD40	51.43
PF00691	OmpA	13.33

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
All Organisms	root	All Organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
cellular organisms	root	All Organisms → cellular organisms	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	8.57 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	6.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	8.57 %
Methyloligella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	8.57 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Rhizobium freirei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei	8.57 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.67 %
Rhizobium freirei PRF 81	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	8.57 %
Methyloligella halotolerans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	1.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_3570483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	807	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1073584	Not Available	518	Open in IMG/M
3300003471\|FeGluNO3_10450511	Not Available	559	Open in IMG/M
3300004013\|Ga0055465_10200603	Not Available	655	Open in IMG/M
3300004114\|Ga0062593_100763782	Not Available	955	Open in IMG/M
3300004156\|Ga0062589_101355736	Not Available	691	Open in IMG/M
3300004481\|Ga0069718_16000449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	758	Open in IMG/M
3300005105\|Ga0066812_1021283	Not Available	536	Open in IMG/M
3300005146\|Ga0066817_1015593	Not Available	655	Open in IMG/M
3300005161\|Ga0066807_1031384	Not Available	578	Open in IMG/M
3300005332\|Ga0066388_102872024	Not Available	880	Open in IMG/M
3300005332\|Ga0066388_104874687	Not Available	682	Open in IMG/M
3300005336\|Ga0070680_100739346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	847	Open in IMG/M
3300005339\|Ga0070660_101122755	Not Available	666	Open in IMG/M
3300005347\|Ga0070668_100815899	Not Available	829	Open in IMG/M
3300005356\|Ga0070674_101852816	Not Available	548	Open in IMG/M
3300005435\|Ga0070714_102249307	Not Available	531	Open in IMG/M
3300005459\|Ga0068867_100379662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1187	Open in IMG/M
3300005535\|Ga0070684_100354490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1350	Open in IMG/M
3300005539\|Ga0068853_101854426	Not Available	584	Open in IMG/M
3300005544\|Ga0070686_100495850	Not Available	947	Open in IMG/M
3300005547\|Ga0070693_100633491	Not Available	776	Open in IMG/M
3300005547\|Ga0070693_101318200	Not Available	559	Open in IMG/M
3300005718\|Ga0068866_10551635	Not Available	771	Open in IMG/M
3300006163\|Ga0070715_10390344	Not Available	771	Open in IMG/M
3300006175\|Ga0070712_100441698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1082	Open in IMG/M
3300006573\|Ga0074055_11427572	Not Available	844	Open in IMG/M
3300006880\|Ga0075429_100528449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1034	Open in IMG/M
3300009078\|Ga0105106_11026684	Not Available	586	Open in IMG/M
3300009120\|Ga0117941_1064289	Not Available	987	Open in IMG/M
3300009153\|Ga0105094_10937603	Not Available	512	Open in IMG/M
3300009156\|Ga0111538_10334315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1918	Open in IMG/M
3300009157\|Ga0105092_10257097	Not Available	982	Open in IMG/M
3300009168\|Ga0105104_10286829	Not Available	903	Open in IMG/M
3300009168\|Ga0105104_10548846	Not Available	654	Open in IMG/M
3300009174\|Ga0105241_11705202	Not Available	612	Open in IMG/M
3300009553\|Ga0105249_12191733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	625	Open in IMG/M
3300009553\|Ga0105249_12431418	Not Available	596	Open in IMG/M
3300010358\|Ga0126370_10411575	Not Available	1115	Open in IMG/M
3300010360\|Ga0126372_10076204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2413	Open in IMG/M
3300010366\|Ga0126379_12600222	Not Available	604	Open in IMG/M
3300010371\|Ga0134125_10557441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1268	Open in IMG/M
3300010399\|Ga0134127_10336055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1469	Open in IMG/M
3300010400\|Ga0134122_10240339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1524	Open in IMG/M
3300012884\|Ga0157300_1051809	Not Available	648	Open in IMG/M
3300012948\|Ga0126375_10696809	Not Available	790	Open in IMG/M
3300012951\|Ga0164300_10043152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1740	Open in IMG/M
3300012958\|Ga0164299_10074417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1681	Open in IMG/M
3300012984\|Ga0164309_10186120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1416	Open in IMG/M
3300012985\|Ga0164308_12225290	Not Available	510	Open in IMG/M
3300012986\|Ga0164304_10165183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1410	Open in IMG/M
3300012989\|Ga0164305_10089516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1943	Open in IMG/M
3300014271\|Ga0075326_1238026	Not Available	556	Open in IMG/M
3300014302\|Ga0075310_1123971	Not Available	568	Open in IMG/M
3300015200\|Ga0173480_10071642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1614	Open in IMG/M
3300015201\|Ga0173478_10232344	Not Available	795	Open in IMG/M
3300015371\|Ga0132258_10830074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2331	Open in IMG/M
3300016387\|Ga0182040_10431161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1041	Open in IMG/M
3300017947\|Ga0187785_10152321	Not Available	972	Open in IMG/M
3300017974\|Ga0187777_11107179	Not Available	576	Open in IMG/M
3300017997\|Ga0184610_1246329	Not Available	594	Open in IMG/M
3300018051\|Ga0184620_10091390	Not Available	926	Open in IMG/M
3300018076\|Ga0184609_10066816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1567	Open in IMG/M
3300018432\|Ga0190275_11075432	Not Available	877	Open in IMG/M
3300018469\|Ga0190270_12393940	Not Available	590	Open in IMG/M
3300018476\|Ga0190274_12666990	Not Available	597	Open in IMG/M
3300019377\|Ga0190264_11826135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	548	Open in IMG/M
3300019767\|Ga0190267_10969382	Not Available	592	Open in IMG/M
3300020186\|Ga0163153_10180203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1102	Open in IMG/M
3300021078\|Ga0210381_10119203	Not Available	873	Open in IMG/M
3300021478\|Ga0210402_10197318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1849	Open in IMG/M
3300022533\|Ga0242662_10099306	Not Available	828	Open in IMG/M
3300022726\|Ga0242654_10262324	Not Available	623	Open in IMG/M
3300022886\|Ga0247746_1176991	Not Available	553	Open in IMG/M
3300025313\|Ga0209431_10746080	Not Available	718	Open in IMG/M
3300025899\|Ga0207642_10445100	Not Available	784	Open in IMG/M
3300025905\|Ga0207685_10316904	Not Available	776	Open in IMG/M
3300025908\|Ga0207643_10345626	Not Available	933	Open in IMG/M
3300025921\|Ga0207652_11173864	Not Available	669	Open in IMG/M
3300025922\|Ga0207646_10769771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	858	Open in IMG/M
3300025930\|Ga0207701_10924023	Not Available	730	Open in IMG/M
3300025961\|Ga0207712_11076359	Not Available	715	Open in IMG/M
3300025961\|Ga0207712_11480048	Not Available	608	Open in IMG/M
3300026067\|Ga0207678_10570696	Not Available	990	Open in IMG/M
3300026121\|Ga0207683_10764338	All Organisms → cellular organisms → Bacteria → Proteobacteria	897	Open in IMG/M
3300028380\|Ga0268265_11691847	Not Available	638	Open in IMG/M
3300028589\|Ga0247818_10656309	Not Available	725	Open in IMG/M
3300028608\|Ga0247819_11116030	Not Available	504	Open in IMG/M
3300030606\|Ga0299906_11347557	Not Available	509	Open in IMG/M
3300030989\|Ga0308196_1064558	Not Available	531	Open in IMG/M
3300031469\|Ga0170819_15850101	Not Available	567	Open in IMG/M
3300031474\|Ga0170818_106313009	Not Available	1086	Open in IMG/M
3300031538\|Ga0310888_10594602	Not Available	671	Open in IMG/M
3300031720\|Ga0307469_10312345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1300	Open in IMG/M
3300031740\|Ga0307468_100178377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1406	Open in IMG/M
3300031763\|Ga0318537_10127813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	945	Open in IMG/M
3300031879\|Ga0306919_10032795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3292	Open in IMG/M
3300032003\|Ga0310897_10489498	Not Available	595	Open in IMG/M
3300032013\|Ga0310906_10057227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	1955	Open in IMG/M
3300032013\|Ga0310906_10287459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	1043	Open in IMG/M
3300032179\|Ga0310889_10207318	Not Available	909	Open in IMG/M
3300032180\|Ga0307471_101152105	Not Available	940	Open in IMG/M
3300033551\|Ga0247830_10469920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 81	987	Open in IMG/M
3300033551\|Ga0247830_11335030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloligella → Methyloligella halotolerans	573	Open in IMG/M
3300034659\|Ga0314780_135907	Not Available	594	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.90%
Host-Associated	Host-Associated	18.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	69.52%
Plants	Host-Associated → Plants	18.10%
Aquatic	Environmental → Aquatic	12.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.48%
Freshwater	Environmental → Aquatic → Freshwater	7.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.62%
Sediment	Environmental → Aquatic → Sediment	3.81%
Marine	Environmental → Aquatic → Marine	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.38%
Loam	Environmental → Terrestrial → Soil → Loam	13.33%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.81%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.81%
Lake	Environmental → Aquatic → Freshwater → Lake	0.95%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.43%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.52%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.81%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.90%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.95%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.95%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Wetland Sediment	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Wetland Sediment	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300003471	Fe-reducing enrichment culture from wetland. Sample 5 with periodic nitrate additions.	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005146	Soil and rhizosphere microbial communities from Laval, Canada - mgHAB	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009120	Lake sediment microbial communities from Tanners Lake, St. Paul, MN	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014302	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D2	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0828.00005570	2162886013	Switchgrass Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSGYKAKGA
AF_2010_repII_A01DRAFT_10735841	3300000580	Forest Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNPAPNACSGYKAERA*
FeGluNO3_104505112	3300003471	Wetland Sediment	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKADRA*
Ga0055465_102006033	3300004013	Natural And Restored Wetlands	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0062593_1007637822	3300004114	Soil	LVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0062589_1013557362	3300004156	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0069718_160004492	3300004481	Sediment	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAERA*
Ga0066812_10212831	3300005105	Soil	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSGYKAKGA*
Ga0066817_10155931	3300005146	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSCYKAERA*
Ga0066807_10313842	3300005161	Soil	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPKFTPSTWSGYKAKGA*
Ga0066388_1028720242	3300005332	Tropical Forest Soil	PFKPCMVFSPLVKRQVPFLHVPVRRLQIKNGLLSGDRFVGYWCQNATPNPAPNASSGYKAERA*
Ga0066388_1048746871	3300005332	Tropical Forest Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNPTPNACSGYKAERA*
Ga0070680_1007393463	3300005336	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNP
Ga0070660_1011227552	3300005339	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0070668_1008158992	3300005347	Switchgrass Rhizosphere	TITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0070674_1018528162	3300005356	Miscanthus Rhizosphere	PCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0070714_1022493072	3300005435	Agricultural Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLTPSTWSGYKAKRA*
Ga0068867_1003796622	3300005459	Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSRDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0070684_1003544901	3300005535	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVCCFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAERA*
Ga0068853_1018544261	3300005539	Corn Rhizosphere	TITPFKPCMVFSPLVKRQVPFLHVPVRRFQFKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0070686_1004958502	3300005544	Switchgrass Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAEKA*
Ga0070693_1006334912	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	TPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0070693_1013182002	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYK
Ga0068866_105516353	3300005718	Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLYGDRFVGHWCQNATPNLNPNAHSRYKAERA*
Ga0070715_103903443	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0070712_1004416982	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0074055_114275721	3300006573	Soil	PFKPCMVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSATRRKEPDQV*
Ga0075429_1005284492	3300006880	Populus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLSPKAHSRYKTERA*
Ga0105106_110266842	3300009078	Freshwater Sediment	VATMITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0117941_10642892	3300009120	Lake Sediment	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0105094_109376032	3300009153	Freshwater Sediment	VATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVDHWCQNATPNLNPNAHSRYKADRA*
Ga0111538_103343152	3300009156	Populus Rhizosphere	MVFSPLVKRQVPFLHVPVRCFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0105092_102570971	3300009157	Freshwater Sediment	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPDAQSSYKAKRA*
Ga0105104_102868293	3300009168	Freshwater Sediment	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNP
Ga0105104_105488461	3300009168	Freshwater Sediment	RQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPDAQSSYKAKRA*
Ga0105241_117052022	3300009174	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAEKA*
Ga0105249_121917331	3300009553	Switchgrass Rhizosphere	TAAATSVATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0105249_124314181	3300009553	Switchgrass Rhizosphere	IVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0126370_104115753	3300010358	Tropical Forest Soil	MVFSPLVKRQVPFLHVPVRRLQIKNGLLSGDRFVGHWCQNATPNPAPNACSGYKAERA*
Ga0126372_100762042	3300010360	Tropical Forest Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNPAPNA*
Ga0126379_126002221	3300010366	Tropical Forest Soil	TAAATSVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNPAPNACSGYKAERA*
Ga0134125_105574413	3300010371	Terrestrial Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLTPS
Ga0134127_103360553	3300010399	Terrestrial Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLYGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0134122_102403393	3300010400	Terrestrial Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAEKA*
Ga0157300_10518092	3300012884	Soil	MVFSPLVKRQVPFLHVPVCCFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0126375_106968092	3300012948	Tropical Forest Soil	MVFSPLVKRQVPFLHVPVRRLQIKNGLLSGDRFVGYWCQNATPNPAPNASSGYKAERA*
Ga0164300_100431521	3300012951	Soil	IVATTITPFKPCMVFSPLVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATPNLTPSTW*
Ga0164299_100744171	3300012958	Soil	IVATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0164309_101861201	3300012984	Soil	ATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0164308_122252901	3300012985	Soil	ATIVATTITPFKPCMVFSPLVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0164304_101651831	3300012986	Soil	KQPPSATAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0164305_100895161	3300012989	Soil	QPPSATAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA*
Ga0075326_12380262	3300014271	Natural And Restored Wetlands	MVFSPLVKRQVPFLHVPVRRFQIKNGLLFGRRFVGHWCQNATPNLNPQCRSGYKAERA*
Ga0075310_11239711	3300014302	Natural And Restored Wetlands	MVFSPLVKRQVPFLHVPVRRFQTKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAERA*
Ga0173480_100716422	3300015200	Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA*
Ga0173478_102323442	3300015201	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGYWCQNATPNLNPNAHSRYKAKRA*
Ga0132258_108300743	3300015371	Arabidopsis Rhizosphere	PFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNPAPNACSGYKAERA*
Ga0182040_104311613	3300016387	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGYWCQNATPNLAPNT
Ga0187785_101523212	3300017947	Tropical Peatland	MVFSPLVKRQVPFLHVPVRRFQIKIGLLSGDRFVGHWCQNATPNLTPSSWSGYKAQRA
Ga0187777_111071792	3300017974	Tropical Peatland	VATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLLSSDRFVGHWCQNATPNPAPNACSGYKAERA
Ga0184610_12463292	3300017997	Groundwater Sediment	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPKFTPSTWSGYKAKGA
Ga0184620_100913903	3300018051	Groundwater Sediment	MVFSPLVKRQVPFLHVLVRRFQIKYGLLSGDRFVGYWCQNATPKFTPSTWSGYKAKGA
Ga0184609_100668163	3300018076	Groundwater Sediment	MVFSPLVKRQVPFLHVPVWRFQIKNGLQYRDRFVGHWCQNATPNLNLLPRSGYKVKRA
Ga0190275_110754322	3300018432	Soil	PLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKADRA
Ga0190270_123939402	3300018469	Soil	LVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAERA
Ga0190274_126669902	3300018476	Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKADRA
Ga0190264_118261352	3300019377	Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPDAQSSYKAKRA
Ga0190267_109693822	3300019767	Soil	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVPHWCQNATPNLNAIAQSGYKAT
Ga0163153_101802031	3300020186	Freshwater Microbial Mat	MVFSPLVKRQVPFLHVPVRRFQIKNGLLYGDRFVGHWCQNATPNLNPNVHSRYKAERA
Ga0210381_101192031	3300021078	Groundwater Sediment	TIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSGYKAKGA
Ga0210402_101973184	3300021478	Soil	MVFSPLVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATPNLTPSTWSGYKAERA
Ga0242662_100993061	3300022533	Soil	MVFSPLVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATPNLTPSTWSGYKA
Ga0242654_102623242	3300022726	Soil	MVFSPSVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATPNLTPS
Ga0247746_11769912	3300022886	Soil	TIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0209431_107460801	3300025313	Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPQCTV
Ga0207642_104451002	3300025899	Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLYGDRFVGHWCQNATPNLNPNAHSRYKAERA
Ga0207685_103169042	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLPSGDRFVGHWCQNATPNLTPSTWSGYKADRA
Ga0207643_103456261	3300025908	Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207652_111738642	3300025921	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207646_107697713	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLTPS
Ga0207701_109240231	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	TAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207712_110763591	3300025961	Switchgrass Rhizosphere	ITPFKPCMVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207712_114800482	3300025961	Switchgrass Rhizosphere	AAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207678_105706962	3300026067	Corn Rhizosphere	MVFSPLVKRQVPFLHVPVCCFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0207683_107643382	3300026121	Miscanthus Rhizosphere	MVFSPLVKRQVPFLHVPVRRFQIKIGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0268265_116918471	3300028380	Switchgrass Rhizosphere	ITPFKPCMVFSPLVKRQVPFLHVPVRCFQIKNGLPSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0247818_106563092	3300028589	Soil	MVFSPLVKRQVPFLHVPVRRFQIKHGLLSGDRFVGYWCQNATPNLTPSTWSGFKAKGA
Ga0247819_111160301	3300028608	Soil	ATAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKHGLLSGDRFVGYWCQNATPNLTPEHLVRLQGERSLIKYS
Ga0299906_113475572	3300030606	Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLSGDRFVGHWCQNATPNLNPDA
Ga0308196_10645581	3300030989	Soil	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPKFTPSTW
Ga0170819_158501011	3300031469	Forest Soil	MVFSPLVKRQVPFLHVPVWCFQIKNGLRSGDRFVGHWCQNATLNLTP
Ga0170818_1063130092	3300031474	Forest Soil	MVFSPLVKRQVPFLHVPVWCFQIKNGLPSDDRFVGHWCQNATPNLTPSTWSGYKAERA
Ga0310888_105946021	3300031538	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0307469_103123451	3300031720	Hardwood Forest Soil	MVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSGFKAKGA
Ga0307468_1001783772	3300031740	Hardwood Forest Soil	MVFSPLVKRQVPFLHVPVRRFQIKNGLLPGDRFVGYWCQNATPNLTPSTWSGYKAKGA
Ga0318537_101278132	3300031763	Soil	VFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGYWCQNATPNLAPNTWSGCKAEKADQV
Ga0306919_100327953	3300031879	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLPSGDRFVGYWCQNATPNLAPNTWSGCKAEKADQ
Ga0310897_104894981	3300032003	Soil	TAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0310906_100572273	3300032013	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYRRKEPDQ
Ga0310906_102874591	3300032013	Soil	IVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0310889_102073181	3300032179	Soil	VPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0307471_1011521052	3300032180	Hardwood Forest Soil	TAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKYGLLSGDRFVGYWCQNATPNLTPSTWSGYKAKGA
Ga0247830_104699202	3300033551	Soil	KQPPSATAAATIVATTITPFKPCMVFSPLVKRQVPFLHVPVRRFQIKNGLRSGDRFVGHWCQNATPNLNPNAHSRYKAKRA
Ga0247830_113350302	3300033551	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSRDRFVGHWCQNATPNLNPNAHSRYKAERA
Ga0314780_135907_113_289	3300034659	Soil	MVFSPLVKRQVPFLHVPVWRFQIKNGLLSGDRFVGHWCQNATPNLNPNARSRYKAERA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096119

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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