Basic Information | |
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Family ID | F096139 |
Family Type | Metagenome |
Number of Sequences | 105 |
Average Sequence Length | 48 residues |
Representative Sequence | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 76.19 % |
% of genes near scaffold ends (potentially truncated) | 28.57 % |
% of genes from short scaffolds (< 2000 bps) | 91.43 % |
Associated GOLD sequencing projects | 81 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.52 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (85.714 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (10.476 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.476 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (49.524 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.67% β-sheet: 0.00% Coil/Unstructured: 45.33% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.52 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Wetland Freshwater Lake Sediment Sediment Wetland Sediment Soil Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Soil Soil Agricultural Soil Soil Grasslands Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Deep Subsurface Peat Soil Avena Fatua Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Sediment Slurry |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1106553592 | 3300000956 | Soil | VSEVLGRTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR* |
JGI10216J12902_1114604872 | 3300000956 | Soil | MNEALGRTIGDRIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKR* |
JGI10216J12902_1144673852 | 3300000956 | Soil | GERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR* |
Ga0062593_1009458802 | 3300004114 | Soil | MERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0062593_1019935572 | 3300004114 | Soil | VNELLGRPIGDRIAADYVVMVVALVVWGAVFFYLMRLERKVRELDKR* |
Ga0062589_1015475711 | 3300004156 | Soil | RPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR* |
Ga0062592_1011563231 | 3300004480 | Soil | GRAARGRRLDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR* |
Ga0062383_106912491 | 3300004778 | Wetland Sediment | MNEFLGRSIGERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR* |
Ga0062594_1008129292 | 3300005093 | Soil | VNELLGRPIGDRIAADYVVMVVALLVWGAVFFYLMRLERKVRELDKR* |
Ga0070670_1000178703 | 3300005331 | Switchgrass Rhizosphere | MDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0070689_1012294542 | 3300005340 | Switchgrass Rhizosphere | MDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0070675_1004395822 | 3300005354 | Miscanthus Rhizosphere | MDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0070673_1023205841 | 3300005364 | Switchgrass Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVR |
Ga0070688_1009555852 | 3300005365 | Switchgrass Rhizosphere | LARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0070688_1016401702 | 3300005365 | Switchgrass Rhizosphere | MERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0070667_1010688082 | 3300005367 | Switchgrass Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR* |
Ga0070678_1001850202 | 3300005456 | Miscanthus Rhizosphere | MDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0070707_1006745823 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | EFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR* |
Ga0070698_1004692763 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MDEDGKGSRRVNEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR* |
Ga0070699_1011321252 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | VNEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR* |
Ga0070699_1013575962 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | MDRDRKGSRGVNGFLARPIGDRIGADWVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0070697_1003795163 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | LLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR* |
Ga0070664_1001133583 | 3300005564 | Corn Rhizosphere | VNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0068864_1008638512 | 3300005618 | Switchgrass Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0066905_1012866542 | 3300005713 | Tropical Forest Soil | MNEALGRTIGDRIAADYVVMIVALVVWGAVFLYLMRLDRKVRELEKR* |
Ga0068863_1024873042 | 3300005841 | Switchgrass Rhizosphere | MERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR* |
Ga0070715_100967133 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | VNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKS* |
Ga0079222_115125341 | 3300006755 | Agricultural Soil | LNSLLARPIGDRIGADWVVMFVALVVWGAVFFYLLRLERRVRELDKR* |
Ga0079220_118349442 | 3300006806 | Agricultural Soil | VNQFLGRPIGDRIMADMVVMVVALVVWGAVFFYLMRLDRRVRELDKR* |
Ga0075430_1015669642 | 3300006846 | Populus Rhizosphere | MERDRKGCCGVNGLLARPIGDRIGADMVVMVVTLVVWGALFLYLLRLDRRVRELDKR* |
Ga0075434_1016559312 | 3300006871 | Populus Rhizosphere | MDRDRKGSCGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0079217_108435492 | 3300006876 | Agricultural Soil | MNEALGRTIGERIAADYVVMIVALVVWGAVFLYLLRLDKKVRELDKP* |
Ga0068865_1008601843 | 3300006881 | Miscanthus Rhizosphere | RAPRGRRMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0079216_116164232 | 3300006918 | Agricultural Soil | MNEVLGRTVGERIVADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR* |
Ga0079303_105149212 | 3300006930 | Deep Subsurface | VNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR* |
Ga0079218_101354463 | 3300007004 | Agricultural Soil | MNELMGRTVGERIVADYVVMTVALVVWGAVFLYLMRLDRKVRELDKR* |
Ga0079218_101438533 | 3300007004 | Agricultural Soil | MNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP* |
Ga0079218_114874603 | 3300007004 | Agricultural Soil | RLNELLGRTVGDRIVADYVVMVVALVVWGGIFLYLKRLDRKVRELDKP* |
Ga0066710_1034998462 | 3300009012 | Grasslands Soil | VTQLLGRTVGERIVADYVVMVVALLVWAGIFFYLVRLDRRVRRLDKR |
Ga0111539_117376523 | 3300009094 | Populus Rhizosphere | LARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0115026_115319621 | 3300009111 | Wetland | VGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR* |
Ga0111538_108180422 | 3300009156 | Populus Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0105248_105861061 | 3300009177 | Switchgrass Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHR |
Ga0105249_113566341 | 3300009553 | Switchgrass Rhizosphere | RGVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR* |
Ga0105340_13655133 | 3300009610 | Soil | RTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR* |
Ga0137312_10523971 | 3300011400 | Soil | PIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0150985_1132105162 | 3300012212 | Avena Fatua Rhizosphere | LNPILGRPIGDRIMADLVVMVVALVVWGAVFLYLMRLDRRVREIDKR* |
Ga0150985_1222095782 | 3300012212 | Avena Fatua Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGAVFFYLLRLDKRVRELDKR* |
Ga0157308_103890161 | 3300012910 | Soil | RKMIAAMVVMVVALVVWGALFLYLLRLDRRVRELDKR* |
Ga0137410_110299402 | 3300012944 | Vadose Zone Soil | VNAFLGRPIGDRIMADAVVMVVALVVWGALFFYLMRLDKRVRELDRR* |
Ga0157380_112213542 | 3300014326 | Switchgrass Rhizosphere | MLGRTIGERIAADYVVMAVALVCWIAVFLYLVRLERRVKELEKS* |
Ga0157380_114837522 | 3300014326 | Switchgrass Rhizosphere | VNEVLGRTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR* |
Ga0157376_114988542 | 3300014969 | Miscanthus Rhizosphere | MLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR* |
Ga0173478_104983272 | 3300015201 | Soil | VNGLLARPIGDRIGADMVVMVVARVVWGALFLYLLRLDGRVRELDKR* |
Ga0190266_101791421 | 3300017965 | Soil | MDGDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR |
Ga0190266_102329582 | 3300017965 | Soil | VNEVLGRTIGDRIVADYVVMIVALVVWGAIFLYLMRLDRKVRELDKR |
Ga0184611_10786382 | 3300018067 | Groundwater Sediment | VNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0184624_103521751 | 3300018073 | Groundwater Sediment | RMDGDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0184625_104271622 | 3300018081 | Groundwater Sediment | VNGILARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR |
Ga0190265_105685772 | 3300018422 | Soil | VVGHGEGSRGMNEFMGRTVGERIAADYVVMAVALVVWGAVFLYLMRLDRKVRELDKR |
Ga0190274_113367292 | 3300018476 | Soil | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR |
Ga0190271_106372652 | 3300018481 | Soil | VNEVLGRTIGDRIVADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR |
Ga0190271_132359711 | 3300018481 | Soil | IGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDRR |
Ga0173482_102653762 | 3300019361 | Soil | MERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0173479_106630522 | 3300019362 | Soil | MDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0182009_105389511 | 3300021445 | Soil | GDRITADLVVMVVALVVWGAVFFYLMRLDRRVRELDKR |
Ga0222622_100183691 | 3300022756 | Groundwater Sediment | DRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0247792_10681862 | 3300022880 | Soil | VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0207685_101850903 | 3300025905 | Corn, Switchgrass And Miscanthus Rhizosphere | VNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKS |
Ga0207662_113476442 | 3300025918 | Switchgrass Rhizosphere | VNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR |
Ga0207646_115969512 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | EFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR |
Ga0207650_100278623 | 3300025925 | Switchgrass Rhizosphere | MDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR |
Ga0207659_101657274 | 3300025926 | Miscanthus Rhizosphere | MDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR |
Ga0207701_112823912 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0207670_105650932 | 3300025936 | Switchgrass Rhizosphere | MERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR |
Ga0207679_100117433 | 3300025945 | Corn Rhizosphere | MDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR |
Ga0207651_117358712 | 3300025960 | Switchgrass Rhizosphere | MDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR |
Ga0207658_103669791 | 3300025986 | Switchgrass Rhizosphere | MDRDRKGSCGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0207677_121258731 | 3300026023 | Miscanthus Rhizosphere | MERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRV |
Ga0207708_119070231 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | GLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR |
Ga0207641_109468922 | 3300026088 | Switchgrass Rhizosphere | VNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR |
Ga0207648_108912352 | 3300026089 | Miscanthus Rhizosphere | VNELLGRPIGDRIAADYVVMVVALLVWGAVFFYLMRLERRVR |
Ga0209798_105478162 | 3300027843 | Wetland Sediment | MNEFLGRSIGERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR |
Ga0209486_100201263 | 3300027886 | Agricultural Soil | MNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP |
Ga0209486_104850692 | 3300027886 | Agricultural Soil | MNELMGRTVGERIVADYVVMTVALVVWGAVFLYLMRLDRKVRELDKR |
Ga0209668_100009634 | 3300027899 | Freshwater Lake Sediment | VNETLGRAVGDRIVADYVVMIVALVVWGAVFFYLMQLDRKVRELDKR |
Ga0209382_120795801 | 3300027909 | Populus Rhizosphere | MNEALGRTVGERIVADYVVMVVALVVWGAVFLYLMRLDKKVRELDKR |
Ga0247825_112841901 | 3300028812 | Soil | MNEALGRTIGERIAADYVVMVVALVVWGAVFLYLL |
Ga0247826_110380401 | 3300030336 | Soil | MNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDK |
Ga0247826_110698842 | 3300030336 | Soil | MERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR |
Ga0315290_101647104 | 3300031834 | Sediment | VNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKP |
Ga0310904_102919611 | 3300031854 | Soil | LLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR |
Ga0315278_105427033 | 3300031997 | Sediment | VNEVLGRTVGDRIVADYVVMVVALVVWGALFAYLMQLDRKVRELDKR |
Ga0315910_100318463 | 3300032144 | Soil | VNETLGRTIGDRIVADWVVMAVALVVWGAVFLYLMRLDRKVRELEKR |
Ga0315268_110396543 | 3300032173 | Sediment | VNEILGRSVGERIAADWVVMIVALVVWGALFFYLMRLDRKVRELEKP |
Ga0315270_104167182 | 3300032275 | Sediment | VGRNRKGSGRVNEILGRSVGERIAADWVVMIVALVVWGALFFYLMRLDRKVRELEKP |
Ga0315287_112942752 | 3300032397 | Sediment | VNEVLGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKP |
Ga0316605_124904832 | 3300033408 | Soil | VNETLGRTVGDRIVADYVVMIVALVVWGAIFLYLMQLDRKVRELDKR |
Ga0316625_1003870223 | 3300033418 | Soil | TVGDRIVADYVVMIVALVVWGAIFFYLMQLDRKVRELDKR |
Ga0326726_108905022 | 3300033433 | Peat Soil | VNQFLGRPIGDRIMADMVVMVVALIVWGAVFFYLMRLDRRVRELDKR |
Ga0316627_1021223492 | 3300033482 | Soil | VNETLGRTVGDRIVADYVVMIVALVVWGAIFFYLMQLDRKVRELDKR |
Ga0316621_101097993 | 3300033488 | Soil | VNETLGRAVGDRIVADYVVMIVALVVWGAVFLYLMKLD |
Ga0247829_100475343 | 3300033550 | Soil | MNEVLGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP |
Ga0373895_049302_3_128 | 3300034075 | Sediment Slurry | VNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVR |
Ga0373897_092360_384_527 | 3300034080 | Sediment Slurry | VNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR |
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