NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096139

Metagenome Family F096139

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096139
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 48 residues
Representative Sequence VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Number of Associated Samples 92
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 76.19 %
% of genes near scaffold ends (potentially truncated) 28.57 %
% of genes from short scaffolds (< 2000 bps) 91.43 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (85.714 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.476 % of family members)
Environment Ontology (ENVO) Unclassified
(30.476 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(49.524 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1JGI10216J12902_1106553592
2JGI10216J12902_1114604872
3JGI10216J12902_1144673852
4Ga0062593_1009458802
5Ga0062593_1019935572
6Ga0062589_1015475711
7Ga0062592_1011563231
8Ga0062383_106912491
9Ga0062594_1008129292
10Ga0070670_1000178703
11Ga0070689_1012294542
12Ga0070675_1004395822
13Ga0070673_1023205841
14Ga0070688_1009555852
15Ga0070688_1016401702
16Ga0070667_1010688082
17Ga0070678_1001850202
18Ga0070707_1006745823
19Ga0070698_1004692763
20Ga0070699_1011321252
21Ga0070699_1013575962
22Ga0070697_1003795163
23Ga0070664_1001133583
24Ga0068864_1008638512
25Ga0066905_1012866542
26Ga0068863_1024873042
27Ga0070715_100967133
28Ga0079222_115125341
29Ga0079220_118349442
30Ga0075430_1015669642
31Ga0075434_1016559312
32Ga0079217_108435492
33Ga0068865_1008601843
34Ga0079216_116164232
35Ga0079303_105149212
36Ga0079218_101354463
37Ga0079218_101438533
38Ga0079218_114874603
39Ga0066710_1034998462
40Ga0111539_117376523
41Ga0115026_115319621
42Ga0111538_108180422
43Ga0105248_105861061
44Ga0105249_113566341
45Ga0105340_13655133
46Ga0137312_10523971
47Ga0150985_1132105162
48Ga0150985_1222095782
49Ga0157308_103890161
50Ga0137410_110299402
51Ga0157380_112213542
52Ga0157380_114837522
53Ga0157376_114988542
54Ga0173478_104983272
55Ga0190266_101791421
56Ga0190266_102329582
57Ga0184611_10786382
58Ga0184624_103521751
59Ga0184625_104271622
60Ga0190265_105685772
61Ga0190274_113367292
62Ga0190271_106372652
63Ga0190271_132359711
64Ga0173482_102653762
65Ga0173479_106630522
66Ga0182009_105389511
67Ga0222622_100183691
68Ga0247792_10681862
69Ga0207685_101850903
70Ga0207662_113476442
71Ga0207646_115969512
72Ga0207650_100278623
73Ga0207659_101657274
74Ga0207701_112823912
75Ga0207670_105650932
76Ga0207679_100117433
77Ga0207651_117358712
78Ga0207658_103669791
79Ga0207677_121258731
80Ga0207708_119070231
81Ga0207641_109468922
82Ga0207648_108912352
83Ga0209798_105478162
84Ga0209486_100201263
85Ga0209486_104850692
86Ga0209668_100009634
87Ga0209382_120795801
88Ga0247825_112841901
89Ga0247826_110380401
90Ga0247826_110698842
91Ga0315290_101647104
92Ga0310904_102919611
93Ga0315278_105427033
94Ga0315910_100318463
95Ga0315268_110396543
96Ga0315270_104167182
97Ga0315287_112942752
98Ga0316605_124904832
99Ga0316625_1003870223
100Ga0326726_108905022
101Ga0316627_1021223492
102Ga0316621_101097993
103Ga0247829_100475343
104Ga0373895_049302_3_128
105Ga0373897_092360_384_527
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.67%    β-sheet: 0.00%    Coil/Unstructured: 45.33%
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Variant

51015202530354045VNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKRExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
85.7%14.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Wetland
Freshwater Lake Sediment
Sediment
Wetland Sediment
Soil
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Soil
Soil
Agricultural Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Deep Subsurface
Peat Soil
Avena Fatua Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Sediment Slurry
4.8%2.9%10.5%4.8%8.6%2.9%4.8%3.8%8.6%4.8%2.9%2.9%4.8%5.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_11065535923300000956SoilVSEVLGRTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR*
JGI10216J12902_11146048723300000956SoilMNEALGRTIGDRIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKR*
JGI10216J12902_11446738523300000956SoilGERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR*
Ga0062593_10094588023300004114SoilMERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0062593_10199355723300004114SoilVNELLGRPIGDRIAADYVVMVVALVVWGAVFFYLMRLERKVRELDKR*
Ga0062589_10154757113300004156SoilRPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR*
Ga0062592_10115632313300004480SoilGRAARGRRLDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR*
Ga0062383_1069124913300004778Wetland SedimentMNEFLGRSIGERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR*
Ga0062594_10081292923300005093SoilVNELLGRPIGDRIAADYVVMVVALLVWGAVFFYLMRLERKVRELDKR*
Ga0070670_10001787033300005331Switchgrass RhizosphereMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0070689_10122945423300005340Switchgrass RhizosphereMDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0070675_10043958223300005354Miscanthus RhizosphereMDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0070673_10232058413300005364Switchgrass RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVR
Ga0070688_10095558523300005365Switchgrass RhizosphereLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0070688_10164017023300005365Switchgrass RhizosphereMERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0070667_10106880823300005367Switchgrass RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR*
Ga0070678_10018502023300005456Miscanthus RhizosphereMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0070707_10067458233300005468Corn, Switchgrass And Miscanthus RhizosphereEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR*
Ga0070698_10046927633300005471Corn, Switchgrass And Miscanthus RhizosphereMDEDGKGSRRVNEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR*
Ga0070699_10113212523300005518Corn, Switchgrass And Miscanthus RhizosphereVNEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR*
Ga0070699_10135759623300005518Corn, Switchgrass And Miscanthus RhizosphereMDRDRKGSRGVNGFLARPIGDRIGADWVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0070697_10037951633300005536Corn, Switchgrass And Miscanthus RhizosphereLLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR*
Ga0070664_10011335833300005564Corn RhizosphereVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0068864_10086385123300005618Switchgrass RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0066905_10128665423300005713Tropical Forest SoilMNEALGRTIGDRIAADYVVMIVALVVWGAVFLYLMRLDRKVRELEKR*
Ga0068863_10248730423300005841Switchgrass RhizosphereMERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR*
Ga0070715_1009671333300006163Corn, Switchgrass And Miscanthus RhizosphereVNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKS*
Ga0079222_1151253413300006755Agricultural SoilLNSLLARPIGDRIGADWVVMFVALVVWGAVFFYLLRLERRVRELDKR*
Ga0079220_1183494423300006806Agricultural SoilVNQFLGRPIGDRIMADMVVMVVALVVWGAVFFYLMRLDRRVRELDKR*
Ga0075430_10156696423300006846Populus RhizosphereMERDRKGCCGVNGLLARPIGDRIGADMVVMVVTLVVWGALFLYLLRLDRRVRELDKR*
Ga0075434_10165593123300006871Populus RhizosphereMDRDRKGSCGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0079217_1084354923300006876Agricultural SoilMNEALGRTIGERIAADYVVMIVALVVWGAVFLYLLRLDKKVRELDKP*
Ga0068865_10086018433300006881Miscanthus RhizosphereRAPRGRRMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0079216_1161642323300006918Agricultural SoilMNEVLGRTVGERIVADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR*
Ga0079303_1051492123300006930Deep SubsurfaceVNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR*
Ga0079218_1013544633300007004Agricultural SoilMNELMGRTVGERIVADYVVMTVALVVWGAVFLYLMRLDRKVRELDKR*
Ga0079218_1014385333300007004Agricultural SoilMNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP*
Ga0079218_1148746033300007004Agricultural SoilRLNELLGRTVGDRIVADYVVMVVALVVWGGIFLYLKRLDRKVRELDKP*
Ga0066710_10349984623300009012Grasslands SoilVTQLLGRTVGERIVADYVVMVVALLVWAGIFFYLVRLDRRVRRLDKR
Ga0111539_1173765233300009094Populus RhizosphereLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0115026_1153196213300009111WetlandVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR*
Ga0111538_1081804223300009156Populus RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0105248_1058610613300009177Switchgrass RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHR
Ga0105249_1135663413300009553Switchgrass RhizosphereRGVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR*
Ga0105340_136551333300009610SoilRTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR*
Ga0137312_105239713300011400SoilPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0150985_11321051623300012212Avena Fatua RhizosphereLNPILGRPIGDRIMADLVVMVVALVVWGAVFLYLMRLDRRVREIDKR*
Ga0150985_12220957823300012212Avena Fatua RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGAVFFYLLRLDKRVRELDKR*
Ga0157308_1038901613300012910SoilRKMIAAMVVMVVALVVWGALFLYLLRLDRRVRELDKR*
Ga0137410_1102994023300012944Vadose Zone SoilVNAFLGRPIGDRIMADAVVMVVALVVWGALFFYLMRLDKRVRELDRR*
Ga0157380_1122135423300014326Switchgrass RhizosphereMLGRTIGERIAADYVVMAVALVCWIAVFLYLVRLERRVKELEKS*
Ga0157380_1148375223300014326Switchgrass RhizosphereVNEVLGRTIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDKR*
Ga0157376_1149885423300014969Miscanthus RhizosphereMLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR*
Ga0173478_1049832723300015201SoilVNGLLARPIGDRIGADMVVMVVARVVWGALFLYLLRLDGRVRELDKR*
Ga0190266_1017914213300017965SoilMDGDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR
Ga0190266_1023295823300017965SoilVNEVLGRTIGDRIVADYVVMIVALVVWGAIFLYLMRLDRKVRELDKR
Ga0184611_107863823300018067Groundwater SedimentVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0184624_1035217513300018073Groundwater SedimentRMDGDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0184625_1042716223300018081Groundwater SedimentVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR
Ga0190265_1056857723300018422SoilVVGHGEGSRGMNEFMGRTVGERIAADYVVMAVALVVWGAVFLYLMRLDRKVRELDKR
Ga0190274_1133672923300018476SoilVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR
Ga0190271_1063726523300018481SoilVNEVLGRTIGDRIVADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR
Ga0190271_1323597113300018481SoilIGDRIVADYVVMVVALVVWGAIFLYLMRLDRKVRELDRR
Ga0173482_1026537623300019361SoilMERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0173479_1066305223300019362SoilMDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0182009_1053895113300021445SoilGDRITADLVVMVVALVVWGAVFFYLMRLDRRVRELDKR
Ga0222622_1001836913300022756Groundwater SedimentDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0247792_106818623300022880SoilVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0207685_1018509033300025905Corn, Switchgrass And Miscanthus RhizosphereVNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKS
Ga0207662_1134764423300025918Switchgrass RhizosphereVNGLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR
Ga0207646_1159695123300025922Corn, Switchgrass And Miscanthus RhizosphereEFLARPIGERIGADWVVMIVALVVWGAVFFYLMRLDRRVRELDKR
Ga0207650_1002786233300025925Switchgrass RhizosphereMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR
Ga0207659_1016572743300025926Miscanthus RhizosphereMDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR
Ga0207701_1128239123300025930Corn, Switchgrass And Miscanthus RhizosphereMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0207670_1056509323300025936Switchgrass RhizosphereMERDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR
Ga0207679_1001174333300025945Corn RhizosphereMDRDRKGSRGVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR
Ga0207651_1173587123300025960Switchgrass RhizosphereMDRDRKGSRGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLKLDHRVRELDKR
Ga0207658_1036697913300025986Switchgrass RhizosphereMDRDRKGSCGVNGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0207677_1212587313300026023Miscanthus RhizosphereMERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRV
Ga0207708_1190702313300026075Corn, Switchgrass And Miscanthus RhizosphereGLLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRRVRELDKR
Ga0207641_1094689223300026088Switchgrass RhizosphereVNGMLARPIGDRIGADMVVMVVALVVWGALFLYLLRLDRQVRELDKR
Ga0207648_1089123523300026089Miscanthus RhizosphereVNELLGRPIGDRIAADYVVMVVALLVWGAVFFYLMRLERRVR
Ga0209798_1054781623300027843Wetland SedimentMNEFLGRSIGERIAADYVVMVVALVVWGAVFLYLMRLDRKVRELDKR
Ga0209486_1002012633300027886Agricultural SoilMNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP
Ga0209486_1048506923300027886Agricultural SoilMNELMGRTVGERIVADYVVMTVALVVWGAVFLYLMRLDRKVRELDKR
Ga0209668_1000096343300027899Freshwater Lake SedimentVNETLGRAVGDRIVADYVVMIVALVVWGAVFFYLMQLDRKVRELDKR
Ga0209382_1207958013300027909Populus RhizosphereMNEALGRTVGERIVADYVVMVVALVVWGAVFLYLMRLDKKVRELDKR
Ga0247825_1128419013300028812SoilMNEALGRTIGERIAADYVVMVVALVVWGAVFLYLL
Ga0247826_1103804013300030336SoilMNEALGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDK
Ga0247826_1106988423300030336SoilMERDRKGSRGVNGILARPIGDRIGADMVVMVVALVVWGALFLYLLKLDRRVRELDKR
Ga0315290_1016471043300031834SedimentVNEILGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKP
Ga0310904_1029196113300031854SoilLLARPIGDRIGADMVVMVVALVVWGAVFLYLLRLDKRVRELDKR
Ga0315278_1054270333300031997SedimentVNEVLGRTVGDRIVADYVVMVVALVVWGALFAYLMQLDRKVRELDKR
Ga0315910_1003184633300032144SoilVNETLGRTIGDRIVADWVVMAVALVVWGAVFLYLMRLDRKVRELEKR
Ga0315268_1103965433300032173SedimentVNEILGRSVGERIAADWVVMIVALVVWGALFFYLMRLDRKVRELEKP
Ga0315270_1041671823300032275SedimentVGRNRKGSGRVNEILGRSVGERIAADWVVMIVALVVWGALFFYLMRLDRKVRELEKP
Ga0315287_1129427523300032397SedimentVNEVLGRTVGERIAADWVVMIVALVVWGALFFYLMRLDRRVRELEKP
Ga0316605_1249048323300033408SoilVNETLGRTVGDRIVADYVVMIVALVVWGAIFLYLMQLDRKVRELDKR
Ga0316625_10038702233300033418SoilTVGDRIVADYVVMIVALVVWGAIFFYLMQLDRKVRELDKR
Ga0326726_1089050223300033433Peat SoilVNQFLGRPIGDRIMADMVVMVVALIVWGAVFFYLMRLDRRVRELDKR
Ga0316627_10212234923300033482SoilVNETLGRTVGDRIVADYVVMIVALVVWGAIFFYLMQLDRKVRELDKR
Ga0316621_1010979933300033488SoilVNETLGRAVGDRIVADYVVMIVALVVWGAVFLYLMKLD
Ga0247829_1004753433300033550SoilMNEVLGRTIGERIAADYVVMVVALVVWGAVFLYLLRLDKKVRELDKP
Ga0373895_049302_3_1283300034075Sediment SlurryVNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVR
Ga0373897_092360_384_5273300034080Sediment SlurryVNETLGRAVGDRIVADYVVMIVALVVWGAIFLYLMKLDRKVRELDKR


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