NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F096239

Metagenome / Metatranscriptome Family F096239

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096239
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 49 residues
Representative Sequence MQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Number of Associated Samples 66
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 56.19 %
% of genes near scaffold ends (potentially truncated) 32.38 %
% of genes from short scaffolds (< 2000 bps) 80.95 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (80.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere
(19.048 % of family members)
Environment Ontology (ENVO) Unclassified
(35.238 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(31.429 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 65.96%    β-sheet: 0.00%    Coil/Unstructured: 34.04%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF12802MarR_2 41.90
PF00230MIP 9.52
PF13610DDE_Tnp_IS240 3.81
PF01872RibD_C 3.81
PF08751TrwC 2.86
PF04879Molybdop_Fe4S4 2.86
PF00072Response_reg 1.90
PF00196GerE 1.90
PF07992Pyr_redox_2 1.90
PF00106adh_short 0.95
PF12680SnoaL_2 0.95
PF02618YceG 0.95
PF00892EamA 0.95
PF13586DDE_Tnp_1_2 0.95
PF03729DUF308 0.95
PF13565HTH_32 0.95
PF01609DDE_Tnp_1 0.95
PF02371Transposase_20 0.95
PF03595SLAC1 0.95
PF13006Nterm_IS4 0.95
PF00005ABC_tran 0.95
PF12681Glyoxalase_2 0.95
PF13340DUF4096 0.95
PF04073tRNA_edit 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0580Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)Carbohydrate transport and metabolism [G] 9.52
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 3.81
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 3.81
COG1275Tellurite resistance protein TehA and related permeasesDefense mechanisms [V] 0.95
COG1559Endolytic transglycosylase MltG, terminates peptidoglycan polymerizationCell wall/membrane/envelope biogenesis [M] 0.95
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.95
COG3247Acid resistance membrane protein HdeD, DUF308 familyGeneral function prediction only [R] 0.95
COG3293TransposaseMobilome: prophages, transposons [X] 0.95
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.95
COG3547TransposaseMobilome: prophages, transposons [X] 0.95
COG5421TransposaseMobilome: prophages, transposons [X] 0.95
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.95
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.95

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms80.00 %
UnclassifiedrootN/A20.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000956|JGI10216J12902_101501946Not Available1683Open in IMG/M
3300000956|JGI10216J12902_102115395All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium906Open in IMG/M
3300000956|JGI10216J12902_114408897All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria548Open in IMG/M
3300001431|F14TB_100895609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium606Open in IMG/M
3300005436|Ga0070713_101760707All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300005471|Ga0070698_101228532All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium699Open in IMG/M
3300005562|Ga0058697_10030405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium1962Open in IMG/M
3300005562|Ga0058697_10045389All Organisms → cellular organisms → Bacteria1666Open in IMG/M
3300005562|Ga0058697_10058102All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1502Open in IMG/M
3300005562|Ga0058697_10276134All Organisms → cellular organisms → Bacteria → Terrabacteria group792Open in IMG/M
3300005562|Ga0058697_10386106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia691Open in IMG/M
3300005937|Ga0081455_10012674All Organisms → cellular organisms → Bacteria8391Open in IMG/M
3300005985|Ga0081539_10041864Not Available2673Open in IMG/M
3300009147|Ga0114129_12009142Not Available699Open in IMG/M
3300009789|Ga0126307_10097994All Organisms → cellular organisms → Bacteria2322Open in IMG/M
3300009818|Ga0105072_1115888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium546Open in IMG/M
3300009840|Ga0126313_10122845All Organisms → cellular organisms → Bacteria1934Open in IMG/M
3300009840|Ga0126313_10171387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1652Open in IMG/M
3300009840|Ga0126313_10317439All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1221Open in IMG/M
3300010038|Ga0126315_10042475All Organisms → cellular organisms → Bacteria2430Open in IMG/M
3300010038|Ga0126315_10217059All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300010040|Ga0126308_10034952All Organisms → cellular organisms → Bacteria2834Open in IMG/M
3300010042|Ga0126314_10062065All Organisms → cellular organisms → Bacteria → Terrabacteria group2460Open in IMG/M
3300010042|Ga0126314_10268898All Organisms → cellular organisms → Bacteria1212Open in IMG/M
3300010044|Ga0126310_10026321All Organisms → cellular organisms → Bacteria2994Open in IMG/M
3300010044|Ga0126310_10585244All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria830Open in IMG/M
3300010044|Ga0126310_10774205All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300010145|Ga0126321_1120384All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium663Open in IMG/M
3300010145|Ga0126321_1208121All Organisms → cellular organisms → Bacteria → Terrabacteria group618Open in IMG/M
3300010145|Ga0126321_1265922All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300010145|Ga0126321_1326181Not Available896Open in IMG/M
3300010145|Ga0126321_1484329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium637Open in IMG/M
3300010145|Ga0126321_1520418All Organisms → cellular organisms → Bacteria1281Open in IMG/M
3300010166|Ga0126306_10663544All Organisms → cellular organisms → Bacteria834Open in IMG/M
3300010395|Ga0058701_10597067All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia613Open in IMG/M
3300010999|Ga0138505_100003152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1568Open in IMG/M
3300012199|Ga0137383_10001788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria12990Open in IMG/M
3300012201|Ga0137365_10160421All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1686Open in IMG/M
3300012201|Ga0137365_10232306All Organisms → cellular organisms → Bacteria1374Open in IMG/M
3300012204|Ga0137374_10264613All Organisms → cellular organisms → Bacteria1432Open in IMG/M
3300012204|Ga0137374_10272450Not Available1405Open in IMG/M
3300012204|Ga0137374_10451057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1010Open in IMG/M
3300012204|Ga0137374_10735509All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium737Open in IMG/M
3300012206|Ga0137380_10031564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia4883Open in IMG/M
3300012350|Ga0137372_10222225All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1499Open in IMG/M
3300012354|Ga0137366_10497170All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium881Open in IMG/M
3300012359|Ga0137385_11089652All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300014487|Ga0182000_10266466All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria696Open in IMG/M
3300014488|Ga0182001_10653896Not Available515Open in IMG/M
3300017997|Ga0184610_1202375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia663Open in IMG/M
3300018073|Ga0184624_10343867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium668Open in IMG/M
3300018081|Ga0184625_10213776All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1011Open in IMG/M
3300018476|Ga0190274_10259443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1583Open in IMG/M
3300019767|Ga0190267_11055500All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia578Open in IMG/M
3300019867|Ga0193704_1099464Not Available510Open in IMG/M
3300019869|Ga0193705_1012753All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1836Open in IMG/M
3300021078|Ga0210381_10380305All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium519Open in IMG/M
3300025928|Ga0207700_10774079All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300027379|Ga0209842_1015757All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300027718|Ga0209795_10084128All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300027718|Ga0209795_10106986All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium799Open in IMG/M
3300027718|Ga0209795_10233838Not Available515Open in IMG/M
3300027750|Ga0209461_10136890All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium586Open in IMG/M
3300027809|Ga0209574_10075563All Organisms → cellular organisms → Bacteria912Open in IMG/M
3300027961|Ga0209853_1001620All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6592Open in IMG/M
3300028704|Ga0307321_1120195All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium544Open in IMG/M
3300028711|Ga0307293_10030187All Organisms → cellular organisms → Bacteria1635Open in IMG/M
3300028715|Ga0307313_10030715Not Available1515Open in IMG/M
3300028719|Ga0307301_10064234Not Available1140Open in IMG/M
3300028771|Ga0307320_10281876Not Available658Open in IMG/M
3300028796|Ga0307287_10039034Not Available1717Open in IMG/M
3300028796|Ga0307287_10103690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium1074Open in IMG/M
3300028819|Ga0307296_10114299Not Available1449Open in IMG/M
3300028876|Ga0307286_10020224Not Available2140Open in IMG/M
3300028881|Ga0307277_10188294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium902Open in IMG/M
3300030499|Ga0268259_10019860All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1235Open in IMG/M
3300030499|Ga0268259_10024147All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1140Open in IMG/M
3300030510|Ga0268243_1002270All Organisms → cellular organisms → Bacteria3190Open in IMG/M
3300030510|Ga0268243_1006914All Organisms → cellular organisms → Bacteria2021Open in IMG/M
3300030510|Ga0268243_1068844All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria789Open in IMG/M
3300030510|Ga0268243_1170457Not Available533Open in IMG/M
3300031093|Ga0308197_10308317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium586Open in IMG/M
3300031548|Ga0307408_100159648All Organisms → cellular organisms → Bacteria1789Open in IMG/M
3300031548|Ga0307408_101564684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia625Open in IMG/M
3300031731|Ga0307405_10053699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2511Open in IMG/M
3300031731|Ga0307405_10060030All Organisms → cellular organisms → Bacteria2398Open in IMG/M
3300031731|Ga0307405_10226508All Organisms → cellular organisms → Bacteria1375Open in IMG/M
3300031731|Ga0307405_12038188Not Available514Open in IMG/M
3300031824|Ga0307413_10057400All Organisms → cellular organisms → Bacteria2380Open in IMG/M
3300031824|Ga0307413_10196811Not Available1452Open in IMG/M
3300031824|Ga0307413_10614769Not Available891Open in IMG/M
3300031852|Ga0307410_10015002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4582Open in IMG/M
3300031901|Ga0307406_10097160All Organisms → cellular organisms → Bacteria1997Open in IMG/M
3300031901|Ga0307406_10555001All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300031901|Ga0307406_11878955All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia533Open in IMG/M
3300031903|Ga0307407_10051499All Organisms → cellular organisms → Bacteria2360Open in IMG/M
3300031995|Ga0307409_100375065All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300031995|Ga0307409_101422533Not Available720Open in IMG/M
3300032002|Ga0307416_100196608All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1908Open in IMG/M
3300032002|Ga0307416_102317234All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium637Open in IMG/M
3300032004|Ga0307414_10676998Not Available932Open in IMG/M
3300032126|Ga0307415_100088398All Organisms → cellular organisms → Bacteria2235Open in IMG/M
3300032159|Ga0268251_10011262All Organisms → cellular organisms → Bacteria2493Open in IMG/M
3300032159|Ga0268251_10377717Not Available608Open in IMG/M
3300034174|Ga0334932_042460All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia774Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere19.05%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil14.29%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil12.38%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave11.43%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.48%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil5.71%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.71%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.86%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.86%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.86%
AgaveHost-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave2.86%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.90%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.95%
Sub-Biocrust SoilEnvironmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil0.95%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.95%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil0.95%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009818Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010044Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60EnvironmentalOpen in IMG/M
3300010145Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010166Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27EnvironmentalOpen in IMG/M
3300010395Agave microbial communities from Guanajuato, Mexico - Or.Ma.eHost-AssociatedOpen in IMG/M
3300010999Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012350Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300014488Bulk soil microbial communities from Mexico - San Felipe (SF) metaGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300019867Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1EnvironmentalOpen in IMG/M
3300019869Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2EnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027379Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027718Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027750Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027809Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)Host-AssociatedOpen in IMG/M
3300027961Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)EnvironmentalOpen in IMG/M
3300028704Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028876Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300030499Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)Host-AssociatedOpen in IMG/M
3300030510Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031731Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031852Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032004Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3Host-AssociatedOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M
3300034174Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNSEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10150194613300000956SoilMEGVFWFIFGAVVGMALLPHLQRMANQVRRKLAELDQPKDPSPWL*
JGI10216J12902_10211539513300000956SoilEEEGMEAIFWFVFGAVIGMAALPHLQRIAAQVRRILAELDQPKHPSSRS*
JGI10216J12902_11440889713300000956SoilVVGEEEAMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS*
F14TB_10089560923300001431SoilMQAIFWFWFVFGAVAGMAALPYLQRIVARARQTLAELDQPKQPSSES*
Ga0070713_10176070713300005436Corn, Switchgrass And Miscanthus RhizosphereMESIFWFVFGVAVGMAALPHLKRMADQARRRLAELDQPKDPN
Ga0070698_10122853223300005471Corn, Switchgrass And Miscanthus RhizosphereFWFVFGAVAGMAALPHLQRIAARVRRTLAELDRPKHPSSRS*
Ga0058697_1003040523300005562AgaveMQAIFWFWFLFGAVAGMTALPHLQRIVARARRTLAELDQPKQPSSGS*
Ga0058697_1004538923300005562AgaveMEAIFWFVFGMVAGIGVLPHLQRIVARVRRELAELDQPKHPSSKP*
Ga0058697_1005810223300005562AgaveMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPSSGS*
Ga0058697_1027613423300005562AgaveMEAIFWFVFGMVAGIGVLPHLQRIAARVRRELAELDQPKHPSSKP*
Ga0058697_1038610623300005562AgaveVVGEEEEMQAIFWFWFLFGAVAGMAALPHLQRIAAHVRRTLAELDQPKHPKQPSSGS*
Ga0081455_1001267463300005937Tabebuia Heterophylla RhizosphereMQAIFWFWFVFGAVAGMAALPHLQRIVARARQTLAELDQPKQPSSGS*
Ga0081539_1004186443300005985Tabebuia Heterophylla RhizosphereMDAIFWFVFGAVAGMAALPHLQRTVARARRTLAELDQPKQPSSGS*
Ga0114129_1200914223300009147Populus RhizosphereMQAIFWFWFVFGAVAGMAALPHLQRIVARARQILAELDQPKQPSSGS*
Ga0126307_1009799433300009789Serpentine SoilMQAIFWFWFVFGAVAGMTALPHLQRIAAQVRRTLADLDQPKQPSSGS*
Ga0105072_111588813300009818Groundwater SandFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSWS*
Ga0126313_1012284523300009840Serpentine SoilVVGEEEKMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS*
Ga0126313_1017138733300009840Serpentine SoilMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS*
Ga0126313_1031743923300009840Serpentine SoilVVGEEGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRQTLAELDQPKQPNSRS*
Ga0126315_1004247533300010038Serpentine SoilMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS*
Ga0126315_1021705913300010038Serpentine SoilVVGEEEEMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS*
Ga0126308_1003495243300010040Serpentine SoilMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS*
Ga0126314_1006206533300010042Serpentine SoilMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPN
Ga0126314_1026889823300010042Serpentine SoilVVGEEEEMQAIFWFWFLFGAVAGMAVLPHLQRIAAQARRTLAELDQPKHPKQPSSGS*
Ga0126310_1002632133300010044Serpentine SoilVVGEEEEMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS*
Ga0126310_1058524413300010044Serpentine SoilMQAIFWFWFVFGAVAGMAALPHLQRITAQARRTLAELDQPEQPNSRS*
Ga0126310_1077420513300010044Serpentine SoilEMQAIFWFWFVFGAVAGMTALPHLQRIAAQVRRTLADLDQPKQPSSGS*
Ga0126321_112038413300010145SoilTRRVVGEEEEMQAIFWFWFVFGAVAGMTALPHLQRIVARARRTLAELDQPKHPNQPSSGS
Ga0126321_120812113300010145SoilRRLVGKEEGMEAIFWFVFGMVAGIGVLPHLQRIAARVRRELAELDQPKHPSSKP*
Ga0126321_126592233300010145SoilMEAIFWFVFGAAAGMAALPHLQRIAARVRRTLVELDQPERPSSRS*
Ga0126321_132618113300010145SoilDPRVVREEEEMQAVFLFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSWS*
Ga0126321_148432913300010145SoilCTRRVVGEEEGMEAIFWFVFGAVAGMAALPHLQRIADRARRTLAELDQPKHPSSQS*
Ga0126321_152041833300010145SoilEMQAIFWFWFVFGAVAGMAALPHLQRIVARARQTLAELDQPKQPNSRS*
Ga0126306_1066354433300010166Serpentine SoilMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS*
Ga0058701_1059706723300010395AgaveMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPKQPSSGS*
Ga0138505_10000315213300010999SoilMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS*
Ga0137383_1000178813300012199Vadose Zone SoilMQPAEGSGEEEGMEAIFWFVFGAVAGMAALPHLQRMAARVRRTLAELDQPKHPSSRS*
Ga0137365_1016042133300012201Vadose Zone SoilMEAVFWFVFGAVVGVAVLPHLQHLTGRVRRTLAELDQLKDPSGWS*
Ga0137365_1023230613300012201Vadose Zone SoilMEAIFWFVFGAVAGMAALPHLQRMAARVRRTLAELDQPKHPSSRS*
Ga0137374_1026461333300012204Vadose Zone SoilMEAIFWFVFGAGAGMAALPHLQRIAARVRRTLAELDQPKNPSSRS*
Ga0137374_1027245033300012204Vadose Zone SoilMEGIFWFVFGTVVGMASMPHLQRLAAQVRRRLAELDQPKDPSPRP*
Ga0137374_1045105723300012204Vadose Zone SoilMEVIFWFVFGAVTGVAAAPHLQRVAARVRRELAELDQVKPPRS*
Ga0137374_1073550913300012204Vadose Zone SoilMDVLFWFVFGAVTGVAAAPHLQRAAARVRRELAELDQVKPPRS*
Ga0137380_1003156453300012206Vadose Zone SoilMEGIFWFMFGAAVGMSALPHLQRIADRARRRLAELDQPKHPSSWS*
Ga0137372_1022222523300012350Vadose Zone SoilMEVIFWFVFGAVTGVAAAPHLQGVAARVRRELAELDQVKPPRS*
Ga0137366_1049717023300012354Vadose Zone SoilEVIFWFVFGAVTGVAAAPHLQRVAARVRRELAELDQVKPPRS*
Ga0137385_1108965213300012359Vadose Zone SoilGIFWFMFGAAVGMSALPHLQRIADRARRRLAELDQPKHPSSWS*
Ga0182000_1026646613300014487SoilMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPKQPSSGS*
Ga0182001_1065389613300014488SoilMQAIFWFWFVFGAVAGMAALPHLQRIAAQARRTLAELDHPKQPKQPSSGS*
Ga0184610_120237523300017997Groundwater SedimentMEAIFLFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPSSGS
Ga0184624_1034386723300018073Groundwater SedimentEWWGGREMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0184625_1021377623300018081Groundwater SedimentMTSRVVGEEDEMEAIFWFWFVFGAVAGMFALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0190274_1025944323300018476SoilMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLADLDQPKQPNSRS
Ga0190267_1105550023300019767SoilMTRRVVGKEEKMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0193704_109946423300019867SoilMTSRVVGEEDEMEAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0193705_101275323300019869SoilMTCRVVGEEEEMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0210381_1038030513300021078Groundwater SedimentVVGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0207700_1077407913300025928Corn, Switchgrass And Miscanthus RhizosphereMESIFWFVFGVAVGMAALPHLKRMADQARRRLAELDQPKDPNR
Ga0209842_101575733300027379Groundwater SandMEAIFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKHPSSWS
Ga0209795_1008412823300027718AgaveMEAIFWFVFGMVAGIGVLPHLQRIVARVRRALAELDQ
Ga0209795_1010698623300027718AgavePVLRCPAMINIVARCTRRVVGEEEGMEAIFWFVFGAVAGMAALPHLQRIADRARRTLAELDQPKHPSSQS
Ga0209795_1023383813300027718AgaveMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPNS
Ga0209461_1013689013300027750AgaveVGEEEAMQAIFWFWFVFGAVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS
Ga0209574_1007556333300027809AgaveLFGAVAGMAALPHLQRIAAHVRRTLAELDQPKHPKQPSSGS
Ga0209853_100162093300027961Groundwater SandDTTRRVVGEEEKMEAIFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKHPSSWS
Ga0307321_112019513300028704SoilFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307293_1003018713300028711SoilMTCRVVGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307313_1003071523300028715SoilMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307301_1006423433300028719SoilMEAIFWFWFVFGAVAGMAALPHLQRIAAQARRTLAELDQPKQ
Ga0307320_1028187613300028771SoilMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLADLDQPKQPSSGS
Ga0307287_1003903443300028796SoilMEAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQ
Ga0307287_1010369013300028796SoilMQAIFLFWFVFGAVAGMAALPHLQRIIARARRTLAELDQPKQPSSGS
Ga0307296_1011429913300028819SoilMTSRVVGEEDEMEAIFWFWFVFGAVAGMAALPHLQRIAAQARRTLAELDQPKQPSSGS
Ga0307286_1002022423300028876SoilMTSRVVGEEDEMEAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLADLDQPKQPSSGS
Ga0307277_1018829423300028881SoilMEAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0268259_1001986033300030499AgaveVGEEEEMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKHPKQPSSGS
Ga0268259_1002414723300030499AgaveMQAIFWFWFLFGAVAGMTALPHLQRIVARARRTLAELDQPKQPSSGS
Ga0268243_100227023300030510SoilMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0268243_100691423300030510SoilMEAIFWFVFGMVAGIGVLPHLQRIVARVRRELAELDQPKHPSSKP
Ga0268243_106884413300030510SoilMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPKQPSSGS
Ga0268243_117045723300030510SoilMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPKQPSSGS
Ga0308197_1030831713300031093SoilEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307408_10015964833300031548RhizosphereVVGEEEEMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS
Ga0307408_10156468413300031548RhizosphereVVGEEEKMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307405_1005369953300031731RhizosphereMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307405_1006003013300031731RhizosphereMQAIFWFWFVFGVVAGMAALPHLQRIVARARRTLAELDQPKQPNSRS
Ga0307405_1022650813300031731RhizosphereMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAD
Ga0307405_1203818813300031731RhizosphereMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRQTLAELDQPKQPNSRS
Ga0307413_1005740023300031824RhizosphereMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307413_1019681113300031824RhizosphereMQAIFWFWFVFGAVAGMTALPHLQRIAAQVRRTLADLDQPKQPSSGS
Ga0307413_1061476913300031824RhizosphereMTCRMVGEEKEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307410_1001500273300031852RhizosphereGTIGPVEGREEKMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307406_1009716033300031901RhizosphereMTCRMVGEEKEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307406_1055500133300031901RhizosphereMQAIFWFWFLFGAVAGMAALPHLQRIAAQVRRTLADLDQPKQPNSRS
Ga0307406_1187895523300031901RhizosphereRTSRHDTTRRVVGEEEEMQAIFWFWFVFGAVAGMAALPHLQRIVARARQTLAELDQPKQPNSRS
Ga0307407_1005149933300031903RhizosphereVVGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPNSRS
Ga0307409_10037506513300031995RhizosphereVVGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRQTLAELDQPKQPNSRS
Ga0307409_10142253313300031995RhizosphereMTSRAVGEEEEMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLADLDQPRQPSSGS
Ga0307416_10019660833300032002RhizosphereMQAIFWFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQPKQPSSGS
Ga0307416_10231723413300032002RhizosphereGEEEEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRQTLAELDQPKQPNSRS
Ga0307414_1067699823300032004RhizosphereMVGEEKEMQAIFLFWFVFGAVAGMAALPHLQRIAAQVRRTLAELDQ
Ga0307415_10008839823300032126RhizosphereMQAIFWFWFLFGAVAGMAVLPHLQRIAAQARRTLAELDQPKHPKQPSSGS
Ga0268251_1001126223300032159AgaveMEAIFWFVFGMVAGIGVLPHLQRIAARVRRELAELDQPKHPSSKP
Ga0268251_1037771723300032159AgaveMEAIFWFVFGMVAGIGILPHLQRIAARVRRELAELDQPKHPSSKP
Ga0334932_042460_645_7733300034174Sub-Biocrust SoilWFWFLFGAVAGMTALPHLQRIAARARRTLAELDQPKQPNSGS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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