Metagenome Family F096259

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096259
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	54 residues
Representative Sequence	MQNIGLILLTFAFVFAVIAAVIMPTAGRWHFGWAAVACWIASELIGGLGRVFH
Number of Associated Samples	54
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.76 %
% of genes near scaffold ends (potentially truncated)	13.33 %
% of genes from short scaffolds (< 2000 bps)	53.33 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.857 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (42.857 % of family members)
Environment Ontology (ENVO)	Unclassified (70.476 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (81.905 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.09% β-sheet: 0.00% Coil/Unstructured: 46.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01471	PG_binding_1	6.67
PF01520	Amidase_3	4.76
PF03237	Terminase_6N	2.86
PF03354	TerL_ATPase	2.86
PF11752	DUF3309	1.90
PF04404	ERF	1.90
PF09356	Phage_BR0599	1.90
PF04851	ResIII	0.95
PF05136	Phage_portal_2	0.95
PF00583	Acetyltransf_1	0.95
PF16510	P22_portal	0.95
PF13578	Methyltransf_24	0.95
PF01464	SLT	0.95
PF01223	Endonuclease_NS	0.95
PF06381	DUF1073	0.95
PF14354	Lar_restr_allev	0.95
PF03098	An_peroxidase	0.95
PF08299	Bac_DnaA_C	0.95
PF02498	Bro-N	0.95
PF01833	TIG	0.95
PF01551	Peptidase_M23	0.95
PF13394	Fer4_14	0.95
PF13884	Peptidase_S74	0.95
PF12236	Head-tail_con	0.95
PF14890	Intein_splicing	0.95
PF01391	Collagen	0.95
PF13252	DUF4043	0.95
PF01370	Epimerase	0.95
PF10979	DUF2786	0.95
PF13148	DUF3987	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	4.76
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	2.86
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	0.95
COG1864	DNA/RNA endonuclease G, NUC1	Nucleotide transport and metabolism [F]	0.95
COG3617	Prophage antirepressor	Mobilome: prophages, transposons [X]	0.95
COG5511	Phage capsid protein	Mobilome: prophages, transposons [X]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.81 %
Unclassified	root	N/A	16.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.86 %
Unclassified	root	N/A	16.19 %
Viruses	superkingdom	All Organisms → Viruses	0.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.86 %
Unclassified	root	N/A	16.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	32.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.48 %
Unclassified	root	N/A	16.19 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	31.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.81 %
Unclassified	root	N/A	16.19 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	31.43 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.19 %
Unclassified	root	N/A	16.19 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	31.43 %
Unclassified	root	N/A	16.19 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.71 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.76 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.90 %
Verrucomicrobia bacterium ADurb.Bin474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	0.95 %
Desulfurellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales	0.95 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	31.43 %
Unclassified	root	N/A	16.19 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.71 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.81 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	1.90 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
unclassified Desulfurellales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales	0.95 %
Verrucomicrobia bacterium ADurb.Bin474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	31.43 %
Unclassified	root	N/A	16.19 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.81 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.90 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	1.90 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.95 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
Verrucomicrobia bacterium ADurb.Bin474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	31.43 %
Unclassified	root	N/A	16.19 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.81 %
Xanthobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	1.90 %
Bradyrhizobium sp. YR681	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	0.95 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.95 %
Desulfurellales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	0.95 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.95 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.95 %
Verrucomicrobia bacterium ADurb.Bin474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02G47FA	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	527	Open in IMG/M
3300000559\|F14TC_109894100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	826	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10027835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1533	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1000937	All Organisms → cellular organisms → Bacteria	4444	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1002577	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1003908	Not Available	2969	Open in IMG/M
3300001397\|JGI20177J14857_1040120	Not Available	503	Open in IMG/M
3300004114\|Ga0062593_100870438	Not Available	906	Open in IMG/M
3300004633\|Ga0066395_10001436	All Organisms → cellular organisms → Bacteria → Proteobacteria	8461	Open in IMG/M
3300004633\|Ga0066395_10011148	All Organisms → cellular organisms → Bacteria	3332	Open in IMG/M
3300004633\|Ga0066395_10315988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	858	Open in IMG/M
3300005713\|Ga0066905_100035377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2893	Open in IMG/M
3300005713\|Ga0066905_102119180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300005764\|Ga0066903_100012698	All Organisms → cellular organisms → Bacteria	8292	Open in IMG/M
3300005764\|Ga0066903_100019720	All Organisms → cellular organisms → Bacteria	7113	Open in IMG/M
3300005764\|Ga0066903_100020509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7017	Open in IMG/M
3300005764\|Ga0066903_100124725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3596	Open in IMG/M
3300005764\|Ga0066903_100133593	Not Available	3500	Open in IMG/M
3300005764\|Ga0066903_100145454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3386	Open in IMG/M
3300005764\|Ga0066903_100780688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1704	Open in IMG/M
3300005764\|Ga0066903_101451400	All Organisms → Viruses → Predicted Viral	1292	Open in IMG/M
3300005764\|Ga0066903_103468290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	850	Open in IMG/M
3300005764\|Ga0066903_103977567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	793	Open in IMG/M
3300005764\|Ga0066903_108509656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300006805\|Ga0075464_10263176	Not Available	1033	Open in IMG/M
3300006854\|Ga0075425_100751886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1118	Open in IMG/M
3300006871\|Ga0075434_102572628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	510	Open in IMG/M
3300009156\|Ga0111538_10004706	Not Available	18853	Open in IMG/M
3300009545\|Ga0105237_11305584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	732	Open in IMG/M
3300010043\|Ga0126380_10000184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	17413	Open in IMG/M
3300010043\|Ga0126380_10000826	All Organisms → cellular organisms → Bacteria	10987	Open in IMG/M
3300010043\|Ga0126380_10004272	All Organisms → cellular organisms → Bacteria → Proteobacteria	5921	Open in IMG/M
3300010043\|Ga0126380_10013187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3773	Open in IMG/M
3300010043\|Ga0126380_10031686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	2679	Open in IMG/M
3300010043\|Ga0126380_10177929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1398	Open in IMG/M
3300010043\|Ga0126380_10668478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	830	Open in IMG/M
3300010043\|Ga0126380_10713281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	808	Open in IMG/M
3300010046\|Ga0126384_11288672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	677	Open in IMG/M
3300010048\|Ga0126373_10007264	All Organisms → cellular organisms → Bacteria	8727	Open in IMG/M
3300010048\|Ga0126373_10028346	Not Available	4817	Open in IMG/M
3300010233\|Ga0136235_1000698	Not Available	17177	Open in IMG/M
3300010358\|Ga0126370_10000004	All Organisms → cellular organisms → Bacteria	73050	Open in IMG/M
3300010358\|Ga0126370_10009695	All Organisms → cellular organisms → Bacteria	5085	Open in IMG/M
3300010358\|Ga0126370_10354761	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300010361\|Ga0126378_10000080	All Organisms → cellular organisms → Bacteria	70044	Open in IMG/M
3300010361\|Ga0126378_10006087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9437	Open in IMG/M
3300010361\|Ga0126378_12838970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300010362\|Ga0126377_10000890	All Organisms → cellular organisms → Bacteria	19013	Open in IMG/M
3300010362\|Ga0126377_13434549	Not Available	512	Open in IMG/M
3300010366\|Ga0126379_10270998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1685	Open in IMG/M
3300010376\|Ga0126381_100000851	All Organisms → cellular organisms → Bacteria → Proteobacteria	33192	Open in IMG/M
3300010376\|Ga0126381_101466925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	986	Open in IMG/M
3300010376\|Ga0126381_103725448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	596	Open in IMG/M
3300010398\|Ga0126383_12222649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	635	Open in IMG/M
3300012351\|Ga0137386_10380415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1016	Open in IMG/M
3300012948\|Ga0126375_10000048	Not Available	23205	Open in IMG/M
3300012948\|Ga0126375_10001513	All Organisms → cellular organisms → Bacteria → Proteobacteria	7600	Open in IMG/M
3300012948\|Ga0126375_10001536	All Organisms → cellular organisms → Bacteria	7556	Open in IMG/M
3300012948\|Ga0126375_10028168	All Organisms → cellular organisms → Bacteria	2742	Open in IMG/M
3300012948\|Ga0126375_10093116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1762	Open in IMG/M
3300012948\|Ga0126375_10227561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1246	Open in IMG/M
3300012948\|Ga0126375_10274308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1156	Open in IMG/M
3300012948\|Ga0126375_10325093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1079	Open in IMG/M
3300012948\|Ga0126375_10476902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	924	Open in IMG/M
3300012948\|Ga0126375_10498620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Xanthobacter	907	Open in IMG/M
3300012971\|Ga0126369_10048674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3607	Open in IMG/M
3300012971\|Ga0126369_10094903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2684	Open in IMG/M
3300012971\|Ga0126369_10103333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2585	Open in IMG/M
3300012971\|Ga0126369_10149213	All Organisms → cellular organisms → Bacteria → Proteobacteria	2196	Open in IMG/M
3300013772\|Ga0120158_10022264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5144	Open in IMG/M
3300014166\|Ga0134079_10646535	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300014493\|Ga0182016_10259279	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300014811\|Ga0119960_1043271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	717	Open in IMG/M
3300014811\|Ga0119960_1050578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	686	Open in IMG/M
3300015371\|Ga0132258_10085794	All Organisms → cellular organisms → Bacteria	7359	Open in IMG/M
3300017754\|Ga0181344_1076307	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	985	Open in IMG/M
3300020021\|Ga0193726_1287609	Not Available	645	Open in IMG/M
3300021088\|Ga0210404_10101386	Not Available	1452	Open in IMG/M
3300021178\|Ga0210408_10006911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	9778	Open in IMG/M
3300021401\|Ga0210393_11247418	Not Available	597	Open in IMG/M
3300021404\|Ga0210389_10119832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	2032	Open in IMG/M
3300021420\|Ga0210394_10736489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	863	Open in IMG/M
3300021478\|Ga0210402_10000227	All Organisms → cellular organisms → Bacteria	65448	Open in IMG/M
3300021478\|Ga0210402_10004973	Not Available	11974	Open in IMG/M
3300021560\|Ga0126371_10001758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18391	Open in IMG/M
3300021560\|Ga0126371_10002565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15669	Open in IMG/M
3300021560\|Ga0126371_10002607	All Organisms → cellular organisms → Bacteria → Proteobacteria	15551	Open in IMG/M
3300021560\|Ga0126371_10052720	All Organisms → cellular organisms → Bacteria	3898	Open in IMG/M
3300021560\|Ga0126371_10497601	Not Available	1367	Open in IMG/M
3300021560\|Ga0126371_11869582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	720	Open in IMG/M
3300021560\|Ga0126371_12676100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	605	Open in IMG/M
3300024232\|Ga0247664_1096797	Not Available	684	Open in IMG/M
3300024251\|Ga0247679_1001901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3689	Open in IMG/M
3300024288\|Ga0179589_10143540	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin474	1013	Open in IMG/M
3300025553\|Ga0208080_1020934	Not Available	2200	Open in IMG/M
3300025896\|Ga0208916_10183576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	904	Open in IMG/M
3300027874\|Ga0209465_10030058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2555	Open in IMG/M
3300027874\|Ga0209465_10076730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	1624	Open in IMG/M
3300027874\|Ga0209465_10644492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	522	Open in IMG/M
3300031226\|Ga0307497_10125332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1035	Open in IMG/M
3300031543\|Ga0318516_10178168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300031846\|Ga0318512_10498825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300032001\|Ga0306922_10055375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4112	Open in IMG/M
3300032043\|Ga0318556_10495042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300032075\|Ga0310890_11745834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.24%
Host-Associated	Host-Associated	4.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.52%
Aquatic	Environmental → Aquatic	5.71%
Plants	Host-Associated → Plants	4.76%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.52%
Freshwater	Environmental → Aquatic → Freshwater	3.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.81%
Marine	Environmental → Aquatic → Marine	1.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.52%
Loam	Environmental → Terrestrial → Soil → Loam	19.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.81%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	1.90%
Coastal	Environmental → Aquatic → Marine → Coastal	1.90%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.95%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.95%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.10%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.81%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	42.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	18.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.81%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.86%
Aquatic	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Aquatic	1.90%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.90%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.95%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300001397	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-072012	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010233	Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014811	Aquatic viral communities from ballast water - Michigan State University - AB_ballast water	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017754	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.D.D	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300024251	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025553	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_09285340	2170459010	Grass Soil	MMQNLGLILLCFAFVFAVIAACIMTGNGRWHFGWASVAFWIASELIGGLGRVFH
F14TC_1098941001	3300000559	Soil	MQNLGLILLVFAFVLAVIAGCFIVSVQQRFHLGWLAVAFWIASELIGGLGRVTGVH*
AF_2010_repII_A1DRAFT_100278351	3300000597	Forest Soil	GLILLVFAFVFAVIATVIMETSGRYHFGWAAVACWIAAELIGGLGRVFH*
AP72_2010_repI_A100DRAFT_10009376	3300000837	Forest Soil	MQNVGLILLVFAFVFAVIAAVVGSQMGRWHMGWASIACWIASELIGGLGRVFH*
AP72_2010_repI_A100DRAFT_10025773	3300000837	Forest Soil	MQNIGLILLCFAFVFAVIASVIMTASGRWHFGWAAVACWIASELIGGLGRVFH*
AP72_2010_repI_A001DRAFT_10039083	3300000893	Forest Soil	MQNIGLILLCFAFVFAVIASVIMSQTGRWHFGWAAVACWIASELIGGLGRVFH*
JGI20177J14857_10401202	3300001397	Arctic Peat Soil	MQNVGLILLVFGFVLAVIAGCFQTQIGRFHAGWLAVAFWIASELIGGITRSGMIH*
Ga0062593_1008704383	3300004114	Soil	MANFGLILLVFAFVFAVIAACVMTTTGRWHFGWAAIAFWIASQLLGGLGKVFN*
Ga0066395_1000143613	3300004633	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAAAFQPSFGRWHMGWAAVAAWIASELIGGLGRVFH*
Ga0066395_100111482	3300004633	Tropical Forest Soil	MQNIGLILLTFAFVFAVIAATIMVQAGRFHLGWAAVAFWIASELIGGLGRVFH*
Ga0066395_103159882	3300004633	Tropical Forest Soil	LYNTPRSIRERAMQNIGLILLTFAFVFAVIASVIMSSTGRWHFGWAAIACWIASELIGGLGRVFH*
Ga0066905_1000353774	3300005713	Tropical Forest Soil	MRNVGLVLLAFAFVFAVIAGTIMVTAGRWHFGWTSVAFWIASELIGGISRIVP*
Ga0066905_1021191802	3300005713	Tropical Forest Soil	MQNIGLILLVFAFVFACIAAFGIASAGRWHMGWAAIAAWIAAELIGGLGRVFH*
Ga0066903_1000126986	3300005764	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAACIMPGHGRWNFGWAAVACWIASELIGGLGRVLH*
Ga0066903_1000197207	3300005764	Tropical Forest Soil	MQNLGLILLCFAFVFAVIASVIMSSSGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0066903_1000205092	3300005764	Tropical Forest Soil	VKVKEAIVANIGLILLCFAFVFAVIAACIMEGSGRWHFGWAAVAFWIASELIGGLGRVFH
Ga0066903_1001247254	3300005764	Tropical Forest Soil	MQNVGLILLCFAFVFAVIASVIMASSGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0066903_1001335933	3300005764	Tropical Forest Soil	MQNIGLILLTFAFVFAVIASVIMSSTGRWHFGWAAIACWIASELIG
Ga0066903_1001454545	3300005764	Tropical Forest Soil	MANVGLILLCFAFVFAVIAGCIMQGNGRWHFGWCAIAFWIASELIGGLGRVFH*
Ga0066903_1007806883	3300005764	Tropical Forest Soil	MQNIGLILLCFAFVFAVIASVIMSSSGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0066903_1014514002	3300005764	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAAVVGSQMGRWHMGWASVACWIASELIGGLGRVFH*
Ga0066903_1034682903	3300005764	Tropical Forest Soil	MQNVGLVLLVFAFVFAVIAACVMVQAGRFHLGWAAVACWLAAEIFGGIGRAFGLH*
Ga0066903_1039775672	3300005764	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAACIMDAAGRWRFGWAAIAFWIASELIGGLGRVFH*
Ga0066903_1085096562	3300005764	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAAVIGQQMGRFHLGWAAVAAWIAAELIGGLGRAFH*
Ga0075464_102631762	3300006805	Aqueous	MHNIGLILLVFAFVLAVIAGCIMQGAGRFHLGWCALAFYIASQLIGGLAPVFH*
Ga0075425_1007518862	3300006854	Populus Rhizosphere	MQNVGLILLVFAFVFAVIAACVMEGAGRWHFGWGAIAFWIASELVGGLGRVFH*
Ga0075434_1025726281	3300006871	Populus Rhizosphere	GLILLVFAFVFAVIAACVMEGAGRWHFGWGAIAFWIASELVGGLGRVFH*
Ga0111538_1000470612	3300009156	Populus Rhizosphere	MQNVGLILLVFAFVFAVIAACVMEGAGRWHFGWNAIAFWIASELVGGLGRVFH*
Ga0105237_113055842	3300009545	Corn Rhizosphere	MQNLGLILLVFAFVFGVIATCIMTGSGRWNFLAAAVTFWIASELIGGLGRVVH*
Ga0126380_1000018411	3300010043	Tropical Forest Soil	MQNIGLILLTFAFVFAVIAAVIMPTAGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0126380_1000082619	3300010043	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAAVIGSQMGRWHMGWASVACWIASELIGGLGRVFH*
Ga0126380_100042722	3300010043	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAAVIGSQMGRWHMGWASVACWIASELIGGLGRVFH*
Ga0126380_100131874	3300010043	Tropical Forest Soil	MQNIGLILLCFAFVFAVIAGCIMEGSGRWQFGWAAIAFWIASELIGGLGRVFH*
Ga0126380_100316862	3300010043	Tropical Forest Soil	VEVRVTTREDRDMRNVGLVLLAFAFVFAVIAGTIMVTAGRWHFGWTSIAFWIASELIGGISRIVP*
Ga0126380_101779292	3300010043	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAAVVGSQMGRWHMGWASIACWIASELIGGLGRVFH*
Ga0126380_106684783	3300010043	Tropical Forest Soil	LPRQQEILMQNIGLILLVFAFVFAVIAAVVGSQMGRWHMGWASIACWIASELIGGLGRVFH*
Ga0126380_107132812	3300010043	Tropical Forest Soil	MQNVGLILLCFAFVFAVIAAVIMDASGRWHFGWASVACWIASELIGGLGRVFH*
Ga0126384_112886722	3300010046	Tropical Forest Soil	MQNIGLILLCFAFVFAVIASVIMSSAGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0126373_100072643	3300010048	Tropical Forest Soil	MQNIGLILLVFAFVLACLAAYGVGRPPWHLGWAAVAFWIASELLGGLGRAWH*
Ga0126373_100283465	3300010048	Tropical Forest Soil	MQNTGLILLVFGFVCAVLAAFNVPGGRFDLGWAAIAFWIASELLGGLGRAWH*
Ga0136235_100069835	3300010233	Freshwater	MQNIGLIFLVFAFVLACLASRGVGSPPWNLGWASIACWIAAELIGGITRFIH*
Ga0126370_10000004108	3300010358	Tropical Forest Soil	MQNIGLILLVFAFVFAVIASVIMSSSGRWHFGWAAIACWIASELIGGLGRVFH*
Ga0126370_100096959	3300010358	Tropical Forest Soil	ANVGLILLCFAFVFAVIAACIMEASGRWHFGWAAVAFWIASELIGGLGRVFH*
Ga0126370_103547612	3300010358	Tropical Forest Soil	MQNLGLVLLVFAFVFAVIAAAIMQGSGRWSFGWAAIACWIAAELFAGLGRAFH*
Ga0126378_1000008062	3300010361	Tropical Forest Soil	MQNVGLILLTFAFVFAVIASVIMSSSGRWHFGWAAIACWIASELIGGLGRVFH*
Ga0126378_1000608716	3300010361	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAACIMPGTGRWSFGWAAIACWLAAEIIGGAARVFH*
Ga0126378_128389701	3300010361	Tropical Forest Soil	LGEVTMQNVGLIFLVFAFVFAVIAGTIMTTTGRFHFGWCAVAFWIASELLGGLGRVFH*
Ga0126377_100008903	3300010362	Tropical Forest Soil	MANVGLILLCFAFVFAVIAACIMVTSGRFHFGWTAVAFWIASELIGGLGRVFH*
Ga0126377_134345492	3300010362	Tropical Forest Soil	MANIGLILLVFAFVLAVLASCVMVQTGRFHLGWAAVAFWIASELLGGLGRALH*
Ga0126379_102709983	3300010366	Tropical Forest Soil	MQNIGLILLCFAFVFAVIAATIMVQAGRFHLGWAAVAFWIASELIGGLGRVFH*
Ga0126381_10000085116	3300010376	Tropical Forest Soil	MQNVGLICLAFAFVFAVIAAVIMEGQGRWNFGWAAIAFWIASELIGGLGRAFH*
Ga0126381_1014669251	3300010376	Tropical Forest Soil	MQNVGLIFLVFAFVFAVIAGTIMTTTGRFHFGWCAVAFWIASELLGGLGRVFH*
Ga0126381_1037254481	3300010376	Tropical Forest Soil	MHYVGLILLVFAFVFAVIAAVFFPTVGGRWHLGWAAVACWIASELIGGLAKLVP*
Ga0126383_122226492	3300010398	Tropical Forest Soil	MQNIGLILLCFAFVFAVIAACIMEGSGRWNFGWAAIAFWIASELIGGLGRVFH*
Ga0137386_103804151	3300012351	Vadose Zone Soil	FVFAFIAACIMESNGRWNFGWAAVACWIASELIGGLGSSISCL*
Ga0126375_1000004819	3300012948	Tropical Forest Soil	MANLGLVLLAFAFVFAVICACVMQQAGRFHLGWAAIACWIAAELLGGLGRVFH*
Ga0126375_100015133	3300012948	Tropical Forest Soil	MQNIGLILLCFAFVFAVIAACIMEGQGRWNFGWAAIAFWIASELIGGLGRVFH*
Ga0126375_1000153611	3300012948	Tropical Forest Soil	MEEESMQNIGLILLVFAFVFGCIASFGITQAGRWHIGWSALTAWIASELIGGLGRVFH*
Ga0126375_100281684	3300012948	Tropical Forest Soil	MQNVGLILLCFAFVFAVIAACIMSQAGRFHLGWAAVACWIAAELIGGLGRAFH*
Ga0126375_100931164	3300012948	Tropical Forest Soil	MQNIGLILLVFAFVFAVIAAVVGSQMGRWHMGWASIACWIAAELIGGLGRVFH*
Ga0126375_102275612	3300012948	Tropical Forest Soil	VQNIGLILLCFAFVFAVIAACVMEGQGRWQFGWAAIAFWIASELIGGLGRVFH*
Ga0126375_102743082	3300012948	Tropical Forest Soil	MANLGLICLAFAFVFAVIAAVIMEGQGRWNFGWAAIAFWIAAELIGGLGRAFH*
Ga0126375_103250932	3300012948	Tropical Forest Soil	MQNIGLILLTFAFVFAVIASVIMSSAGRWHFGWAAVACWIASELIGGLGRVFH*
Ga0126375_104769021	3300012948	Tropical Forest Soil	VKVKEAIMANIGLILLCFAFVFAVIAACIMEGSGRWHFGWAAVAFWIASELIGGLGRVFH
Ga0126375_104986202	3300012948	Tropical Forest Soil	VAERIPEMRNIGLVMLAFAFVFAVIAGTIMVTAGRWHFGWTSVAFWIASELIGGISRIVP
Ga0126369_100486743	3300012971	Tropical Forest Soil	MQNIGLILLTFAFVFAVIASVIMSSTGRWHFGWAAIACWIASELIGGLGRVFH*
Ga0126369_100949036	3300012971	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAACIMPAAGRWHFGWAAIACWIASELIGGLGRVLH*
Ga0126369_101033332	3300012971	Tropical Forest Soil	MANVGLILLCFAFVFAVIAACIMEASGRWHFGWAAVAFWIASELIGGLGRVFH*
Ga0126369_101492134	3300012971	Tropical Forest Soil	MANIGLILLCFAFVFAVIAATVMVQAGRFHLGWAAVACWIAAELIGGLGRVFH*
Ga0120158_1002226411	3300013772	Permafrost	MQNIGLIFLAFAFVFAAIAAFWGPGVGRVNFLALAVMCWIASELIGGFGRVFH*
Ga0134079_106465352	3300014166	Grasslands Soil	MVMQYGGLILLVFAFVFAMIAAVFQPSFAPRWHLGWLAVAFWILSEIVGGLGKVIH*
Ga0182016_102592792	3300014493	Bog	MQNIGLILLVFAFVFAVIASCFIYTAGRYNFLSLAIAFWIASELIGGLGRVFH*
Ga0119960_10432712	3300014811	Aquatic	MQNFGLILLVFAFVFACIAAVFQPAFGRWHLGWLAVAFWIASELLGGLSRVLH*
Ga0119960_10505781	3300014811	Aquatic	MQNLGLILLVFAFVFGVIATCIMEGTGRWHFGWAAITFWIASELLGGLGKVFH*
Ga0132258_100857942	3300015371	Arabidopsis Rhizosphere	MQNIGLILLVFAFVFAVIAACVMEGTGRWHFGWGAIAFWIASELVGGLGRVLH*
Ga0181344_10763072	3300017754	Freshwater Lake	MQNIGLILLVFAFVFAVIATCIMTGAGRWHFGWAAVAFWIASELIGGMGRVLH
Ga0193726_12876092	3300020021	Soil	MANIGLILLVFAFVFACIASGFASVWGRFNFGWLAVAFWIASELVGGLARAVH
Ga0210404_101013861	3300021088	Soil	AMQNVGLICVVFAFVCAVLAALSWPQQSRISLGWAAIAFWIASELIGGLGRAAGLH
Ga0210408_100069116	3300021178	Soil	MQNLGLILLAFAFVFAVFAAAYNPPTPTRVHFGWLAITFWIASELIGGLGRVFH
Ga0210393_112474181	3300021401	Soil	MQNVGLIFLAFAFVFAVIAAFFMPTAGRIHFLSLAVACWIASELIGGLGRVFH
Ga0210389_101198325	3300021404	Soil	MQNIGLIFLAFAFVFACIAAFSIPSAGRVHFLSLAVACWIASELIGGLGRVFH
Ga0210394_107364893	3300021420	Soil	MQNLGLILLVFAFVFAVIAACFLETRERWHFGWMAIAFWIASELLGGLGRVFH
Ga0210402_1000022794	3300021478	Soil	MQNIGLILLVFAFVFACIAACFVTQLAPRWHFGWLAVAFWIASELLGGLGRVFH
Ga0210402_1000497324	3300021478	Soil	MQNLGLILLVFAFVFAVIATCFMEANGRWHFGWGAVAFWIASELLGGLGRVFH
Ga0126371_1000175824	3300021560	Tropical Forest Soil	MHNIGLILLVFAFVFAVIAAVHMPTAGRWHFGWAAVAFWIASQLIGGLAGALH
Ga0126371_100025656	3300021560	Tropical Forest Soil	MQNVGLILLCFAFVFAVIAATIMSATGRWHFGWAAVACWIASELIGGLGRVFH
Ga0126371_100026079	3300021560	Tropical Forest Soil	MQNIGLILLVFAFVFAVIASVIMSSSGRWHFGWAAIACWIASELIGGLGRVFH
Ga0126371_100527203	3300021560	Tropical Forest Soil	MQNIGLILLTFAFVFAVIAATIMVQAGRFHLGWAAVAFWIASELIGGLGRVFH
Ga0126371_104976013	3300021560	Tropical Forest Soil	MQNLGLILLVFAFVFAVIAACIMVQSGRFHLGWAAVAFWIAAELLGGLGRAFH
Ga0126371_118695823	3300021560	Tropical Forest Soil	LCFAFVFAVIASVIMSSSGRWHFGWAAVACWIASELIGGLGRVFH
Ga0126371_126761001	3300021560	Tropical Forest Soil	MQNLGLILLCFAFVFAVIASVIMSSSGRWHFGWAAVACWIASELIGGLGRVFH
Ga0247664_10967974	3300024232	Soil	MQNVGLILLVFAFVFACIAATFPATGPNGYWGRFHFGWLAVAFWIASELLGGLARVIH
Ga0247679_10019011	3300024251	Soil	MQNIGLILLVFAFVFGVIATCIMTGAGRWNFLAAAVTFWIASELIGGLGRVIH
Ga0179589_101435402	3300024288	Vadose Zone Soil	MANFGLILLVFAFVFACIAACVMVSAGRFHLGWLAVTFWIASELLGGLGRAFH
Ga0208080_10209342	3300025553	Arctic Peat Soil	MQNVGLILLVFGFVLAVIAGCFQTQIGRFHAGWLAVAFWIASELIGGITRSGMIH
Ga0208916_101835762	3300025896	Aqueous	MQNIGLILLVFAFVFAVIAACIAPGMGRWHFGWASIAFWIASELIGGMGRVFH
Ga0209465_100300583	3300027874	Tropical Forest Soil	MQNVGLILLVFAFVFAVIAAAFQPSFGRWHMGWAAVAAWIASELIGGLGRVFH
Ga0209465_100767304	3300027874	Tropical Forest Soil	MANIGLILLCFAFVFAVIAATVMVQAGRFHLGWAAVACWIAAELIGGLGRVFH
Ga0209465_106444921	3300027874	Tropical Forest Soil	VKVKEAIVANIGLILLCFAFVFAVIAACIMEGSGRWHFGWAAVAFWIASELIRRNHRH
Ga0307497_101253322	3300031226	Soil	MQNIGLILLVFAFVFACIAAAYNLAPAGRWHFGWMAVAFWIAAELLGGLARVIH
Ga0318516_101781682	3300031543	Soil	MQNLGLILLVFAFVTAVIESRIQQVGFWHLGWAALALWIASELIGGIARSGLTH
Ga0318512_104988252	3300031846	Soil	MQNLGLILLVFAFVTAVIESRIQQVGFWHLGWAALALWIASELIGGIARS
Ga0306922_100553751	3300032001	Soil	SHMQNLGLILLVFAFVTAVIESRIQQVGFWHLGWAALALWIASELIGGIARSGLTH
Ga0318556_104950422	3300032043	Soil	MQNLGLILLVFAFVTAVIESRIQQVGFWHLGWAALALWIASELIGGIA
Ga0310890_117458342	3300032075	Soil	MQNIGLILLVFAFVFAVIAACVMEGTGRWHFGWGAIAFWIASELVGGLGRVLH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F096259

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences