Metagenome / Metatranscriptome Family F096406

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096406
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	114 residues
Representative Sequence	MTAEFPRTTYERATREYDEEFKRALVSEILTAICKASMVTDPELRVMALRTGETVEALTTLLISFAAMSPHFDTPSHLREFAENTAKRIRREVSRARAEGFGEDFIFGARGGGN
Number of Associated Samples	55
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.38 %
% of genes near scaffold ends (potentially truncated)	46.15 %
% of genes from short scaffolds (< 2000 bps)	86.54 %
Associated GOLD sequencing projects	48
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.846 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.692 % of family members)
Environment Ontology (ENVO)	Unclassified (64.423 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.269 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 5.63% Coil/Unstructured: 44.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF09250	Prim-Pol	11.54
PF05063	MT-A70	4.81
PF13481	AAA_25	2.88
PF04545	Sigma70_r4	2.88
PF03457	HA	0.96
PF13362	Toprim_3	0.96
PF16793	RepB_primase	0.96
PF13384	HTH_23	0.96
PF00589	Phage_integrase	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	9.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
All Organisms	root	All Organisms	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
cellular organisms	root	All Organisms → cellular organisms	45.19 %
Viruses	superkingdom	All Organisms → Viruses	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	39.42 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.54 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	32.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	21.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.92 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	19.23 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.92 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	8.65 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.85 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	5.77 %
Bradyrhizobium sp. URHA0002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	2.88 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.96 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.96 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10020176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1830	Open in IMG/M
3300000956\|JGI10216J12902_103712212	Not Available	1199	Open in IMG/M
3300005332\|Ga0066388_100798015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1537	Open in IMG/M
3300005332\|Ga0066388_103063005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	854	Open in IMG/M
3300005332\|Ga0066388_104221427	Not Available	732	Open in IMG/M
3300005332\|Ga0066388_104458699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	713	Open in IMG/M
3300005332\|Ga0066388_104851833	Not Available	684	Open in IMG/M
3300005332\|Ga0066388_104934214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	678	Open in IMG/M
3300005332\|Ga0066388_104994191	Not Available	674	Open in IMG/M
3300005332\|Ga0066388_108503312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	511	Open in IMG/M
3300005332\|Ga0066388_108834039	Not Available	500	Open in IMG/M
3300005363\|Ga0008090_10126831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3284	Open in IMG/M
3300005363\|Ga0008090_14555373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	614	Open in IMG/M
3300005363\|Ga0008090_15089443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	775	Open in IMG/M
3300005363\|Ga0008090_15216477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	876	Open in IMG/M
3300005363\|Ga0008090_15659459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1577	Open in IMG/M
3300005713\|Ga0066905_101763247	Not Available	570	Open in IMG/M
3300005713\|Ga0066905_101776482	Not Available	568	Open in IMG/M
3300005764\|Ga0066903_100019062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7196	Open in IMG/M
3300005764\|Ga0066903_100036456	All Organisms → cellular organisms → Bacteria → Proteobacteria	5699	Open in IMG/M
3300005764\|Ga0066903_100121131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3636	Open in IMG/M
3300005764\|Ga0066903_100338775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2419	Open in IMG/M
3300005764\|Ga0066903_101219420	All Organisms → cellular organisms → Bacteria	1398	Open in IMG/M
3300005764\|Ga0066903_101312231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1353	Open in IMG/M
3300005764\|Ga0066903_101546380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1255	Open in IMG/M
3300005764\|Ga0066903_101693032	Not Available	1204	Open in IMG/M
3300005764\|Ga0066903_103133797	Not Available	895	Open in IMG/M
3300005764\|Ga0066903_106759550	Not Available	596	Open in IMG/M
3300010046\|Ga0126384_12342634	Not Available	516	Open in IMG/M
3300010358\|Ga0126370_11349995	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300010361\|Ga0126378_11936757	Not Available	671	Open in IMG/M
3300010366\|Ga0126379_13371933	Not Available	535	Open in IMG/M
3300010376\|Ga0126381_103212483	Not Available	646	Open in IMG/M
3300010398\|Ga0126383_10027829	Not Available	4441	Open in IMG/M
3300010398\|Ga0126383_13436016	Not Available	517	Open in IMG/M
3300012971\|Ga0126369_12754229	Not Available	575	Open in IMG/M
3300012971\|Ga0126369_13115947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. URHA0002	543	Open in IMG/M
3300016270\|Ga0182036_10173052	Not Available	1559	Open in IMG/M
3300016270\|Ga0182036_10645849	Not Available	852	Open in IMG/M
3300016270\|Ga0182036_10702501	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	818	Open in IMG/M
3300016294\|Ga0182041_10692270	Not Available	903	Open in IMG/M
3300016319\|Ga0182033_10160251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1748	Open in IMG/M
3300016319\|Ga0182033_11219737	Not Available	674	Open in IMG/M
3300016357\|Ga0182032_10694330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	854	Open in IMG/M
3300016357\|Ga0182032_11503242	Not Available	585	Open in IMG/M
3300016404\|Ga0182037_10721885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	854	Open in IMG/M
3300016422\|Ga0182039_10002306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10412	Open in IMG/M
3300016422\|Ga0182039_10652148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	924	Open in IMG/M
3300016445\|Ga0182038_10049063	Not Available	2805	Open in IMG/M
3300016445\|Ga0182038_11351433	Not Available	638	Open in IMG/M
3300031543\|Ga0318516_10114350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1534	Open in IMG/M
3300031544\|Ga0318534_10072466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1952	Open in IMG/M
3300031545\|Ga0318541_10031718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2623	Open in IMG/M
3300031545\|Ga0318541_10327754	Not Available	855	Open in IMG/M
3300031546\|Ga0318538_10754408	Not Available	528	Open in IMG/M
3300031549\|Ga0318571_10077471	All Organisms → Viruses → Predicted Viral	1048	Open in IMG/M
3300031572\|Ga0318515_10755693	Not Available	514	Open in IMG/M
3300031573\|Ga0310915_10061279	All Organisms → cellular organisms → Bacteria	2455	Open in IMG/M
3300031573\|Ga0310915_10279013	Not Available	1179	Open in IMG/M
3300031573\|Ga0310915_10488365	Not Available	875	Open in IMG/M
3300031681\|Ga0318572_10049659	All Organisms → cellular organisms → Bacteria	2255	Open in IMG/M
3300031681\|Ga0318572_10989155	Not Available	500	Open in IMG/M
3300031719\|Ga0306917_10338299	Not Available	1168	Open in IMG/M
3300031744\|Ga0306918_10352604	Not Available	1142	Open in IMG/M
3300031763\|Ga0318537_10193089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	758	Open in IMG/M
3300031781\|Ga0318547_10824906	Not Available	578	Open in IMG/M
3300031798\|Ga0318523_10365136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	718	Open in IMG/M
3300031845\|Ga0318511_10225559	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300031846\|Ga0318512_10304351	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300031879\|Ga0306919_10074578	All Organisms → cellular organisms → Bacteria → Proteobacteria	2322	Open in IMG/M
3300031879\|Ga0306919_11091942	Not Available	608	Open in IMG/M
3300031880\|Ga0318544_10405583	Not Available	530	Open in IMG/M
3300031890\|Ga0306925_10290058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761	Open in IMG/M
3300031910\|Ga0306923_10324003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1759	Open in IMG/M
3300031910\|Ga0306923_12032888	Not Available	582	Open in IMG/M
3300031912\|Ga0306921_10771397	Not Available	1100	Open in IMG/M
3300031941\|Ga0310912_10903675	Not Available	680	Open in IMG/M
3300031942\|Ga0310916_11200988	Not Available	627	Open in IMG/M
3300031945\|Ga0310913_10287314	Not Available	1159	Open in IMG/M
3300031945\|Ga0310913_10332789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1074	Open in IMG/M
3300031945\|Ga0310913_11086895	Not Available	559	Open in IMG/M
3300031946\|Ga0310910_10322887	Not Available	1217	Open in IMG/M
3300031946\|Ga0310910_10669344	Not Available	821	Open in IMG/M
3300031946\|Ga0310910_11218493	Not Available	583	Open in IMG/M
3300031954\|Ga0306926_10466927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1554	Open in IMG/M
3300031954\|Ga0306926_11534594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	767	Open in IMG/M
3300031954\|Ga0306926_12068039	Not Available	638	Open in IMG/M
3300032001\|Ga0306922_10610201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1155	Open in IMG/M
3300032001\|Ga0306922_10719655	Not Available	1049	Open in IMG/M
3300032001\|Ga0306922_12022255	Not Available	561	Open in IMG/M
3300032001\|Ga0306922_12279930	Not Available	520	Open in IMG/M
3300032025\|Ga0318507_10246691	Not Available	775	Open in IMG/M
3300032042\|Ga0318545_10156805	Not Available	810	Open in IMG/M
3300032043\|Ga0318556_10644897	Not Available	552	Open in IMG/M
3300032059\|Ga0318533_10393884	Not Available	1011	Open in IMG/M
3300032066\|Ga0318514_10086548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1573	Open in IMG/M
3300032076\|Ga0306924_10171339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2490	Open in IMG/M
3300032076\|Ga0306924_10353384	Not Available	1685	Open in IMG/M
3300032091\|Ga0318577_10329149	Not Available	730	Open in IMG/M
3300032261\|Ga0306920_100090622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4515	Open in IMG/M
3300032261\|Ga0306920_100652049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1555	Open in IMG/M
3300032261\|Ga0306920_100962130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1245	Open in IMG/M
3300032261\|Ga0306920_102455181	Not Available	718	Open in IMG/M
3300033289\|Ga0310914_11121791	Not Available	688	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.81%
Loam	Environmental → Terrestrial → Soil → Loam	20.19%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.38%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	8.65%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	4.81%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.65%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100201763	3300000597	Forest Soil	MTVEFPRTTYARAVREYDEEFKRHLVSEIVTEIAEASIVTDPDVRIRELRVGETLEALTTCLIATASLSPHFEVPSYLRAFAEDPAKRVRRDVAKARAEGGLGSDFVCGARRQGGSA*
JGI10216J12902_1037122123	3300000956	Soil	MSDSHHQRNDPAAEFPRTTSARGRAGYDDDFRLVEEVLTAIANASLVTDAKVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGTA*
Ga0066388_1007980152	3300005332	Tropical Forest Soil	MQNEREESVQRTSYEQATREYDREFERELITAIVDAIANASMVTDPDIRIMALRTGETCEALITCLISFAAMSPHFDVPSHLREFAETLAKRIRRDVAKARAEGFCSDFVFGARKGGTA*
Ga0066388_1030630051	3300005332	Tropical Forest Soil	MSTVSFSSPKSPRTSYERATREYDEDFKRALITEIVSAIFVASKCTDANVVALRVGETTEALISCLCATAALSPHFDTPSHLRKFAEHVEKRIRREVSKARAEGYAQDFVFGARRGGRA*
Ga0066388_1042214271	3300005332	Tropical Forest Soil	MSDSHHQRSDPAAEFPRTTWARGRAGYDDDFRRHLVEEVITAIANASLVTDANVMALRVGETVEALPTVMILFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGTA*
Ga0066388_1044586992	3300005332	Tropical Forest Soil	MNAEFPRTTYARATREYDEEFKRDLIAEIVRAIFKASMCTDANVMALRVGKTTEALLSCLIATAALSEHFDTPSHLRKFAEHVEKRIRREVSKARAEGYGEKFCFGARKEGRA*
Ga0066388_1048518331	3300005332	Tropical Forest Soil	GTTYARATRENDEEFKRALISEIIAAIAKVSICSDEPKIMAIRTGETVEALLSRLISFAAMSPHFDVPSHLREFAENAAKRIRRDVARARAEGTFDSLGAAKGGRA*
Ga0066388_1049342142	3300005332	Tropical Forest Soil	MSATSSHEKKGEPYRTTWERASREYDDDFKRALVAEITGAIFKASICTDANVAALRVGETCEALLSVLISFASLSPHFDTPSHLREFAEHVSKRIKREVGQARAEGYCSD
Ga0066388_1049941912	3300005332	Tropical Forest Soil	MNTEFPRTTYERATREYDEDFKRALISEIVNALAKASIVTDPELRVMALRVGETLEALTSVLISFAPMSPHFDVPSHTRQFADDLAKRFRRDVAKARAEGYGEDFIFGARKGGSA*
Ga0066388_1085033121	3300005332	Tropical Forest Soil	MKFPRTSWAQASREYNETFRRNLVGAITTAIFETSMVTDSELRVLAIRTGETVEALLSCPIAFASMSPQFDLPNNLRESAENTAKRIRRDVARARAEGAFDRFGARKGGTA*
Ga0066388_1088340391	3300005332	Tropical Forest Soil	VNTEFPGTTYARATREYDEEFKRALISEIIAAIARVSICGDDTKPKIMAIRTGETVEALLSCLISFAAMSPYFDTPSHLREFAENAAKRIRRDIARARAEGTFDNLGAGKGGRA*
Ga0008090_101268312	3300005363	Tropical Rainforest Soil	MTVEFPRTTYARAVREYDEEFKRHLVSEIVTEIAEASIVTDPDVRIRELRVGETLEALTTCLIATASLSPHFEVPSYLRAFAEDPAKRVRRDVTKARAEGGLGSDFVCGARRQGGSA*
Ga0008090_145553732	3300005363	Tropical Rainforest Soil	TDDLTQATAEAPSSRTTYARAVREYDDEFKRHLIVEIVNAIAKASIVTDPDLNVMALRVSETLEALSSVIISFAALSPHFDTPSHLREFAEMTAKRIRRDVAKARSEGGLGRDFIVGAQRQ*
Ga0008090_150894432	3300005363	Tropical Rainforest Soil	REFQQRLTGEILNAIAQASIISDPNLRIMAPRTGETLEALTTCLISFAAMSPHFDTPSNLREFAETLAKRFRRDIAKARAEGGPGRDFIFGAQSDGGSA*
Ga0008090_152164772	3300005363	Tropical Rainforest Soil	MSAEFPRTTYERATREYDQQFERALCAAIIRAVCDASVVTDPDFRVMALRVGETVEALTTVMISFAAMSPQFDTPSHLRKFAETLAKRVRRDIAKARAEGFCEDFIVGARKGGNA*
Ga0008090_156594592	3300005363	Tropical Rainforest Soil	MTAEFPRTSYERATREYDCEFQRRLTGEILNAIAQASIVSDPDLRIMALRTGETLEALTTCLISFAAMSPFFDTPSHLREFAETLAKRFHRDVAKARAEGGLGRDFIFGAQRQAGRA*
Ga0066905_1017632472	3300005713	Tropical Forest Soil	MNAEFPGTTYARATRENDEEFKRALISEIIAAIAKVSICSDEPKIMAIRTGETVEALLSRLISFAAMSPHFDVPSHLREFAENAAKRIRRDVARARAEGTFDSLGAAKGGRA*
Ga0066905_1017764821	3300005713	Tropical Forest Soil	VTTEFRTTYARATREYDTEFQQALVGEIITAIAKASMVTDPDLRVMALRVGETLEALTSLLISFAAMSPHFDTPSHLREFAEDLAKRVRREVGKARAEGFGEDFIFGARKGGTA*
Ga0066903_1000190625	3300005764	Tropical Forest Soil	MNSEFPRTTWERASRKYDKQFERALAAAILEAIAAASVVTDPGCRIMAIRTGETLEALTTVLCSFAAMSPFFDTPSHLREFAETLAKRVRRDVSRARAQGLYDNFVFGAQRRGGRA*
Ga0066903_1000364567	3300005764	Tropical Forest Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA*
Ga0066903_1001211312	3300005764	Tropical Forest Soil	MTTTEFRTTFERASREYDEEFKRALVAEITSAICKASMVTDSDLRVIALRVGETCEALTTLLISFAAMSPHFDVPSHLREFAENTAKRIRRDVAKARAEGVWDHHFGARKGGSA*
Ga0066903_1003387753	3300005764	Tropical Forest Soil	MTVEFPRTTYARAVREYDEEFKRHLVSEIVTEIAEASIVTDPDVRIRELRVGKTLEALTTCLIATASLSPHFEVPSYLRAFAEDPAKRVRRDVAKARAEGGLGSDFVCGARRQGGSA*
Ga0066903_1012194201	3300005764	Tropical Forest Soil	MNTEFPHTTWARATREYDEGFKRDLIAEIITVIAKASMVTDANIMAIRTGETIEALTRCLIAVASLSPYFDTPSHLRELAENTAKRIRREVAKARTEGYCADFIFGARKGG
Ga0066903_1013122311	3300005764	Tropical Forest Soil	MTAEFPRTTYERATREYDEEFTRALVSEILTAICKASMVTDPELRVMALRTGETVEALTTLLISFAAMSPHFDTPSHLREFAENTAKRIRREVSRARAEGFGEDFIFGARGGGNA*
Ga0066903_1015463802	3300005764	Tropical Forest Soil	MTTEFPRTTYERATREYDEEFKRALVSEILSAICKASMVTDPELRVLALRVGETIEALTSVMISFAAMSPQFDTPSNLRIFAENTAKRIRREVAKARAEGVYEDFV
Ga0066903_1016930322	3300005764	Tropical Forest Soil	MTAEFPRTTYERAAREYDEEFERALVAEIVNAICKTSMVTDPELRVMAIRVGETMEALTSCLISFAAMSPHFDTPSHLREFAENLAKRFRHEVGRARAEGGLGRDFIFGVQPDGGRA*
Ga0066903_1031337972	3300005764	Tropical Forest Soil	MNTEFPRTTYQRAVREYDKEFKRTLIGEIVNAIAEASICTDNTRPRIMALRVGETLEALTLVLISFAAISPHFDVPSHLREFAETTAKRIRRDVAQARAEGKFQHFIHGARKGGTA*
Ga0066903_1067595501	3300005764	Tropical Forest Soil	REYDEDFKRALCAAIIRAICDASVVTDPDLRVMALRVGETCEALVDVMISFAAMSPQFDTPSHLREFAENIAKRIRRDIAKARAEGIGQDFIFGAQPRGGRA*
Ga0126384_123426342	3300010046	Tropical Forest Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVEEVITAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARAR
Ga0126370_113499952	3300010358	Tropical Forest Soil	RTSYERAVREYDEDFKRALCAAIIRAICDASVVTDPDLRVMALRVGETCEALVDVMISFAAMSPQFDTPSHLREFAENIAKRIRRDIAKARAEGIGQDFIFGAQPRGGRA*
Ga0126378_119367572	3300010361	Tropical Forest Soil	MTAEFPRTTYERATREYDEEFKRALVSEILTAICKASMVTDPELRVMALRTGETVEALTTLLISFAAMSPHFDTPSHLREFAENTAKRIRREVSRARAEGFGEDFIF
Ga0126379_133719331	3300010366	Tropical Forest Soil	MSTTNPKTSETARTTWARAQAGYDDEFKRHLIGEIVNAIVKASVVTDCNAMAIRIGETVEALTLCLISFAAMSPHFDVPSHLREFAETTAKRIRREVARARAEGYCPDFLLSGQRGASARPITPRDSCTSGRMACSRSLPTAR
Ga0126381_1032124831	3300010376	Tropical Forest Soil	MSTTKPKTSETARTTWARAQAGYDDEFKRHLIGEIVNAIVKASVVTDCNAMAIRIGETVEALTLCLISFAAMSPHFDVPSHLREFAETTAKRIRREVAWARAEGYCADFVFGAQRGGSA*
Ga0126383_100278291	3300010398	Tropical Forest Soil	WARATCEYDEDFKHALIAEIVNAIAKASLCTDANVMAIRIGETIEALTSCLIAMAAMSPQFDVPSHLREFAENTAKRIRREVAKARAEGFGEDFIFGARGGGNA*
Ga0126383_134360161	3300010398	Tropical Forest Soil	MNAPSFRTSFERAAASYDDEFKRRLIEEIITAIAQASVVTDPNLKVMALRIGETLEALTSVLISFAAMSPHFDTPSHLREFAETLAKRIRRDVSKARAEGGLGRDFIFGTQRDGGSA*
Ga0126369_127542291	3300012971	Tropical Forest Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVEEVITAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAETTAKRIRREVARARAEGFCSDFIHGARKGGTA*
Ga0126369_131159471	3300012971	Tropical Forest Soil	MTAEFPRTTYERATREYDEEFKRALVSEILTAICKASMVTDPELRVMALRTGETVEALTTLLISFAAMSPHFDTPSHLREFAENTAKRIRREVSRARAEGFGEDFIFGARGGGN
Ga0182036_101730521	3300016270	Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGG
Ga0182036_106458491	3300016270	Soil	AMNTEFPRTTYARATREYDEDFKRKLIAEILTAIAEASICTDNTTPKIMALRVGETLEALTSLLISFAAMSPHFDTPSHLRDFAETTAKRIRREVARARAEGFCSDFIHGARKGGTA
Ga0182036_107025013	3300016270	Soil	YPSHTTYARATRDYDRQFQEHLASAIVSAIAEASIVTDADLRIMALRVGETLEALCSVLVSFAAMSPHFDVPSHTREFAETLGKRFRREVAKARAEGVGGDFIFGARPGGNA
Ga0182041_106922702	3300016294	Soil	MTPEFPRTSYERATREYDCEFQRRLTGEILNAIAQASIVSDPDLRIMKLRTGETLEALTTCLISFAAMSPFFDTPSHLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0182033_101602513	3300016319	Soil	MNTEFPRTTYARATREYDEDFKRKLIAEILTAIAEASICTDNTTPKIMALRVGETLEALTSLLISFAAMSPHFDTPSHLRDFAETTAKRIRREVARARAEGFCSDFIHGARKGGKA
Ga0182033_112197371	3300016319	Soil	MLNSRPWRARRQMLVSEIVNAVAKASMVTDANVMALRVGETLEALTLCLISFAAMSPHFDTPSHLREFAETLAKRVRREVARARAEGYGEDFIFGARKGGNA
Ga0182032_106943301	3300016357	Soil	SYAQAVREYDEDFKRALITEIVTAITKASMVTDPELRVMAIRTGETCEALLSCLISFAAMSPHFDVPSHLRQFAENTAKRIRRDVARARAEGYCEDFVFGARRGGRA
Ga0182032_115032422	3300016357	Soil	MNTEFLRTTWARATREYDETFKRDLIAEIITAICKASMVTDANVMALRVGETTEALLTCLISFAALSPTFEVPSHLREFAENTAKRIRREVSRARAEGYCEDFIFGARKGGTA
Ga0182037_107218851	3300016404	Soil	EFKKALIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFIFGARKGGTA
Ga0182039_100023063	3300016422	Soil	MTAEFPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFATMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFIFGTRRGGAA
Ga0182039_106521481	3300016422	Soil	PAEGRAMTAESPRTSYAQAVREYDEDFKRALITEIVTAITKASMVTDPELRVMAIRTGETCEALLSCLISFAAMSPHFDVPSHLRQFAENTAKRIRRDVARARAEGYCEDFVFGARRGGR
Ga0182038_100490635	3300016445	Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETIEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSAFIHGPRKGGTA
Ga0182038_113514332	3300016445	Soil	STTQTRTTYERATREYDEDFKRSLAGEIIVAICKASMVTDANVMAIRVGETLDALTTVMTSFAAMSPQFDTPSHLREFAETLAKRVRRDVAKARAEGTFDWLGAGRGGTA
Ga0318516_101143503	3300031543	Soil	MTAEFPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFIFG
Ga0318534_100724663	3300031544	Soil	MTAEFPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFIFGTRRGGAA
Ga0318541_100317183	3300031545	Soil	MNTEFPRTTYARATREYDEDFKRKLIAEILTAIAEASICTDNTTPKIMALRVGETLEALTSLLISFAAMSPHFDTPSHLRDFAETTAKRIRREVARARAEGFCSDFIHGARKGGTA
Ga0318541_103277541	3300031545	Soil	TYARATRDYDRQFQEHLASAIVSAIAEASIVTDADLRIMALRVGETLEALCSVLVSFAAMSPHFDVPSHTREFAETLGKRFRREVAKARAEGVGGDFIFGARPGGNA
Ga0318538_107544082	3300031546	Soil	MTAEFPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGF
Ga0318571_100774711	3300031549	Soil	MIPKNPQTPETARTTYERAVREYDDEFKRHLIEEIITAVAKASIVTDCNVMALRTGETVEALIVCLISFAAMSPHFDTPSHLREFAESTAKRIRREVGKARAEGFYEDFVFGARKGGTA
Ga0318515_107556932	3300031572	Soil	REYDEDFKRKLIAEILTAIAEASICTDNTTPKIMALRVGETLEALTSLLISFAAMSPHFDTPSHLRDFAETTAKRIRREVARARAEGFCSDFIHGARKGGTA
Ga0310915_100612792	3300031573	Soil	MSTTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFIFGARKGGTA
Ga0310915_102790131	3300031573	Soil	MSTTQTRTTYERATREYDEDFKRSLAGEIIVAICKASMVTDANVMAIRVGETLDALTTVMTSFAAMSPQFDTPSHLREFAETLAKRVRRDVAKARAEGTFDWLGAGRGGTA
Ga0310915_104883652	3300031573	Soil	VSLHDKPDLTQATTARTSYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETIEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0318572_100496594	3300031681	Soil	MTAEFPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFI
Ga0318572_109891552	3300031681	Soil	MTAEFPRTTWARATEGYDEDFKRELITEIIGAIAKASIVTDANVMALRTGETCEALLSCLISFAAMSPHFDVPSHLREFAKSSAKRIRREVAKARAGGHYSDFIHGARRGGTA
Ga0306917_103382993	3300031719	Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVEEVITAIANASLVTDANVMALRVGETVEALTTVMISFAAMSPHFDTPSHLREFAETTAKRIRREVARARAESVFDHFGARKGGT
Ga0306918_103526041	3300031744	Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVAEVITAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEG
Ga0318537_101930891	3300031763	Soil	LLSMSDSHYQRNDPAAEFPRTTWARDRAGYDDDFRRHLVAEVVTAIANASLVTDANVMALRVGETVEALTTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGNGVTVPPHSVANTAKAS
Ga0318547_108249061	3300031781	Soil	STTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFIFGARKGGTA
Ga0318523_103651362	3300031798	Soil	TFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFIFGTRRGGAA
Ga0318511_102255591	3300031845	Soil	MNTEFPRTTYARATREYDEDFKRKLIAEILTAIAEASICTDNTTPKIMALRVGETLEALTSLLISFAAMSPHFDTPSHLRDFAETTAKRIRREVARARAEGFCSDFIHGARKG
Ga0318512_103043511	3300031846	Soil	MTAESPRTSYAQAVREYDEDFKRALITEIVTAITKASMVTDPELRVMAIRTGETCEALLSCLISFAAMSPHFDVPSHVREHAEMLAKRFRRDVARARAEGYCEEFV
Ga0306919_100745782	3300031879	Soil	MTAESPRTSYAQAVREYDEDFKRALITEIVTAITKASMVTDPELRVMAIRTGETCEALLSCLISFAAMSPHFDVPSHLRQFAENTAKRIRRDVARARAEGYCEDFVFGARRGGRA
Ga0306919_110919421	3300031879	Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0318544_104055831	3300031880	Soil	EFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMSSFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFIFGARKGGTA
Ga0306925_102900583	3300031890	Soil	MSAEFPSTTYARANCEYDEDFKRHLIEEIINAVAKASIVTDANVMALRTGETIEALTICMIPFAAMSPHFDTPSHLREFAEGTAKRIRREVSRARAEGYGEDFIFGARKGGNA
Ga0306923_103240032	3300031910	Soil	MSAEFPSTTYARANCEYDEDFKRHLIEEIINAVAKASIVTDANVMALRTGETIEALTICMIPFAAMSPHFDTPSHLREFAETLAKRFHRDVAKALAEGGLGRDFIFGAQRQAGRA
Ga0306923_120328882	3300031910	Soil	RTTYERATREYDKDFERNLVSEIISAIAKVSIVTDADLRIMALRTGETVEALTTVLIAMAAMSPHFDTPSNLREFAETLAKRFRREVAKARAEGFCSDFVFGARKGGNA
Ga0306921_107713972	3300031912	Soil	MNVYPSHTTYARATRDYDRQFQEHLASAIVSAIAEASIVTDADLRIMALRVGETLEALCSVLVSFAAMSPHFDVPSHTREFAETLGKRFRREVAKARAEGVGGDFIFGARPGGNA
Ga0310912_109036751	3300031941	Soil	SAEFPSTTYARANCEYDEDFKRHLIEEIINAVAKASIVTDANVMALRTGETIEALTICMIPFAAMSPHFDTPSHLREFAEGTAKRIRREVSRARAEGYGEDFIFGARKGGNA
Ga0310916_112009881	3300031942	Soil	MTPEFPRTSYERATREYDCEFQRRLTGEILNAIAQASIVSDPDLRIMKLRTGETLEALTTCLISFAAMSPFFDTPSHLREFAETLAKRFHRDVAKALAEGGLGRDFIFGAQRQAGRA
Ga0310913_102873142	3300031945	Soil	MSTTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFVFGARRGGRA
Ga0310913_103327891	3300031945	Soil	AGYDDDFRRHLVAEVVTAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGNGVTVPPHSVANTAKAS
Ga0310913_110868952	3300031945	Soil	ADPLPQAATVMTNRNPQPSETARTTYERAVREYDEDFKRTLVSEIVNAVAKASMVTDANVMALRVGETLEALTLCLISFAAMSPHFDTPSHLREFAETLAKRVRREVARARAEGYGEDFIFGARKGGNA
Ga0310910_103228872	3300031946	Soil	MSTTQTRTTYERATREYDEDFKRSLAGEIIVAICKASMVTDANVMAIRVGETLDALTTVMTSFAAMSPQFDTPSHLREFAETLAKRVRRDVAKARAEGTFDWLGAGRG
Ga0310910_106693442	3300031946	Soil	MSTTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYC
Ga0310910_112184932	3300031946	Soil	AANGPQRVRDAVSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0306926_104669272	3300031954	Soil	MSTEFPRTTYERATREYDKDFERNLVSEIISAIAKVSIVTDADLRIMALRTGETVEALTTVLIAMAAMSPHFDTPSNLREFAETLAKRFRREVAKARAEGFCSDFVFGARKGGNA
Ga0306926_115345942	3300031954	Soil	MNTEFLRTTWARATREYDETFKRDLIAEIITAICKASMVTDANVMALRVGETTEALLTCLISFAALSPTFEVPSHLREFAENTAKRIRHEVARARAEGYCEDFVFGARRGGNA
Ga0306926_120680391	3300031954	Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVAEVITAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGT
Ga0306922_106102011	3300032001	Soil	EYDETFKRALITEIVTAIFHASKVTDANIVALRTGETLEALTSCLVATAALSPHFDTPSHLREFAENTAKRIRREVAKARAEGYGEDFIFGARKGGRA
Ga0306922_107196552	3300032001	Soil	VSLHDKPDLTQATTARTSYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0306922_120222551	3300032001	Soil	LLSMSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVAEVVTAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGTA
Ga0306922_122799301	3300032001	Soil	MTNRNPQPSETARTTYERAVREYDEDFKRTLVSEIVNAVAKASMVTDANVMALRVGETLEALTLCLISFAAMSPHFDTPSHLREFAESTAKRIRREVGKARAEGFYEDFVFGARKGGTA
Ga0318507_102466912	3300032025	Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETIEALLSVLISFAAMSPHFDTPSNLREFAETLARRFRREVGRARAEGFCSDFIHGARKGGTA
Ga0318545_101568052	3300032042	Soil	MSTTQTRTTYERATREYDEDFKRSLAGEIIVAICKASMVTDANVMAIRVGETLDALTTVMTSFAAMSPQFDTPSHLREFAETLAKRVRRDVAKARAEGTFDWLGAG
Ga0318556_106448972	3300032043	Soil	MTAEFPRTSYARATREYDEAFKQSLITEIVNAIARASLVTDPELRIMAIRTGETCEALLSCLISFAAMSPCFDTPSHLREFAETTAKRIRRDVARARAEGIGQDIFGASNKGGNA
Ga0318533_103938842	3300032059	Soil	MSTTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFVFGARKGGTA
Ga0318514_100865482	3300032066	Soil	MTAELPRTTYERAVREYDETFKRALITEIVNAIAKASICTDDTAPRIIALRVGETLEALISCMISFAAMSPHFDTPSHLHEFAETTAKRICREVARARAEGFGEKFIFGTRRGGAA
Ga0306924_101713391	3300032076	Soil	NDPAAEFPRTTWARGRAGYDDDFRRHLVEEVITAIANASLVTDANVMALRVGETVEALPTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAESVFDHFGARKGGTA
Ga0306924_103533842	3300032076	Soil	MSTTQTRTTYDRATREYDEEFKRGLIAEIITAIAKTSMVTAANVMALRVGETVEALTTVMISFLAMSPTFDTPSHLREFAENTAKRIRREVSRARAEGYCEDFVFGARKGGNA
Ga0318577_103291491	3300032091	Soil	MTPEFPRTSYERATREYDCEFQRRLTGEILNAIAQASIVSDPDLRIMKLRTGETLEALTTCLISFAAMSPFFDTPSHLREFAETLAKRFHRDVAKALAEGGLGRDFIFGAQRQA
Ga0306920_1000906227	3300032261	Soil	MTAESPRTSYAQAVREYDEDFKRALITEIVTAITKASMVTDPELRVMAIRTGETCEALLSVLISFAAMSHYFDTPSHLREFAEGAAKRIRREVAKARAEGFCEDFIFGARKGGNA
Ga0306920_1006520492	3300032261	Soil	MTPEFPRTSYERATREYDCEFQRRLTGEILNAIAQASIVSDPDLRIMKLRTGETLEALTTCLISFAAMSPFFDTPSHLREFAETLAKRVRREVARARAEGYGEDFIFGARKGGNA
Ga0306920_1009621301	3300032261	Soil	TYERATREYDETFKRALITEIVTAIFHASKVTDANIVALRTGETLEALTSCLVATAALSPHFDTPSHLREFAENTAKRIRREVAKARAEGYGEDFIFGARKGGRA
Ga0306920_1024551811	3300032261	Soil	MSDSHHQRNDPAAEFPRTTWARGRAGYDDDFRRHLVAEVVTAIANASLVTDANVMALRVGETVEALTTVMISFAAMSPHFDTPSHLREFAENTAKRIRREVARARAEGVFDHFGARKGGT
Ga0310914_111217912	3300033289	Soil	VSLHDKPDLTQATTARTTYGRAVAGYDEKFRQHLVGEIITAVAKASMVTDANIMALRVGETTEALLSVLISFAAMSPHFDTPSNLREFAETLAKRFRREVGRARAEGFCSDFIHGARKGGTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096406

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences