NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096701

Metagenome Family F096701

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096701
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 40 residues
Representative Sequence MPNEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLTFLR
Number of Associated Samples 73
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 85.58 %
% of genes near scaffold ends (potentially truncated) 20.19 %
% of genes from short scaffolds (< 2000 bps) 67.31 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (75.962 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(46.154 % of family members)
Environment Ontology (ENVO) Unclassified
(39.423 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.923 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.27%    β-sheet: 0.00%    Coil/Unstructured: 53.73%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF00583Acetyltransf_1 35.58
PF07857TMEM144 29.81
PF12697Abhydrolase_6 2.88
PF00294PfkB 1.92
PF12695Abhydrolase_5 1.92
PF13432TPR_16 0.96
PF00156Pribosyltran 0.96
PF00535Glycos_transf_2 0.96
PF03279Lip_A_acyltrans 0.96
PF04389Peptidase_M28 0.96
PF13692Glyco_trans_1_4 0.96
PF13673Acetyltransf_10 0.96
PF00482T2SSF 0.96
PF14602Hexapep_2 0.96
PF12704MacB_PCD 0.96
PF08240ADH_N 0.96
PF04366Ysc84 0.96
PF13544Obsolete Pfam Family 0.96
PF00561Abhydrolase_1 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1560Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)Lipid transport and metabolism [I] 0.96
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 0.96
COG4261Predicted acyltransferase, LPLAT superfamilyGeneral function prediction only [R] 0.96

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms75.96 %
UnclassifiedrootN/A24.04 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001089|JGI12683J13190_1001094All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia3945Open in IMG/M
3300001545|JGI12630J15595_10051268All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus → Terriglobus saanensis825Open in IMG/M
3300001593|JGI12635J15846_10759870All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium557Open in IMG/M
3300002906|JGI25614J43888_10000230All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae15378Open in IMG/M
3300002910|JGI25615J43890_1080930All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium568Open in IMG/M
3300005435|Ga0070714_100386844All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1320Open in IMG/M
3300005439|Ga0070711_101596529All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terriglobus570Open in IMG/M
3300005518|Ga0070699_100414308All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1219Open in IMG/M
3300005526|Ga0073909_10200401All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae862Open in IMG/M
3300005537|Ga0070730_10001240All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae24891Open in IMG/M
3300005537|Ga0070730_10233741All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1218Open in IMG/M
3300005545|Ga0070695_100026526All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3585Open in IMG/M
3300007255|Ga0099791_10357236Not Available700Open in IMG/M
3300007258|Ga0099793_10014904All Organisms → cellular organisms → Bacteria3097Open in IMG/M
3300007265|Ga0099794_10325191Not Available798Open in IMG/M
3300007265|Ga0099794_10624375Not Available571Open in IMG/M
3300009038|Ga0099829_10448781All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300009088|Ga0099830_10360491Not Available1170Open in IMG/M
3300009088|Ga0099830_10736475Not Available812Open in IMG/M
3300010159|Ga0099796_10307684All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae673Open in IMG/M
3300011269|Ga0137392_11061684Not Available665Open in IMG/M
3300011269|Ga0137392_11337847Not Available575Open in IMG/M
3300011270|Ga0137391_10344430Not Available1281Open in IMG/M
3300012189|Ga0137388_10925083Not Available806Open in IMG/M
3300012189|Ga0137388_11125949All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300012202|Ga0137363_10290185All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1340Open in IMG/M
3300012202|Ga0137363_10309190All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1299Open in IMG/M
3300012202|Ga0137363_11804845All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium504Open in IMG/M
3300012203|Ga0137399_10553979All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae966Open in IMG/M
3300012203|Ga0137399_10778475All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300012203|Ga0137399_11489182All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300012361|Ga0137360_10982527All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300012362|Ga0137361_10131694Not Available2215Open in IMG/M
3300012683|Ga0137398_10373943All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae967Open in IMG/M
3300012685|Ga0137397_11202641All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300012917|Ga0137395_10516057Not Available861Open in IMG/M
3300012918|Ga0137396_10736513Not Available726Open in IMG/M
3300012925|Ga0137419_10231795All Organisms → cellular organisms → Bacteria1383Open in IMG/M
3300012927|Ga0137416_10324870Not Available1282Open in IMG/M
3300012927|Ga0137416_11391539Not Available635Open in IMG/M
3300015241|Ga0137418_10011673All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8095Open in IMG/M
3300015241|Ga0137418_10027976All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5220Open in IMG/M
3300015264|Ga0137403_10008736All Organisms → cellular organisms → Bacteria11332Open in IMG/M
3300020140|Ga0179590_1007128All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2268Open in IMG/M
3300020199|Ga0179592_10297446All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium718Open in IMG/M
3300020579|Ga0210407_10010939All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6761Open in IMG/M
3300020579|Ga0210407_10027880All Organisms → cellular organisms → Bacteria → Acidobacteria4200Open in IMG/M
3300020579|Ga0210407_10054069All Organisms → cellular organisms → Bacteria → Acidobacteria3000Open in IMG/M
3300020579|Ga0210407_10722533All Organisms → cellular organisms → Bacteria771Open in IMG/M
3300020579|Ga0210407_11184812All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300020580|Ga0210403_10006151All Organisms → cellular organisms → Bacteria → Acidobacteria10103Open in IMG/M
3300020581|Ga0210399_10714175Not Available823Open in IMG/M
3300020583|Ga0210401_10082495All Organisms → cellular organisms → Bacteria3026Open in IMG/M
3300021088|Ga0210404_10004081All Organisms → cellular organisms → Bacteria → Acidobacteria5894Open in IMG/M
3300021168|Ga0210406_10003039All Organisms → cellular organisms → Bacteria → Acidobacteria18679Open in IMG/M
3300021170|Ga0210400_10006862All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae9510Open in IMG/M
3300021171|Ga0210405_10075833All Organisms → cellular organisms → Bacteria2649Open in IMG/M
3300021171|Ga0210405_10943305Not Available653Open in IMG/M
3300021404|Ga0210389_11088048Not Available618Open in IMG/M
3300021478|Ga0210402_11420202All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300021559|Ga0210409_10117029All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2452Open in IMG/M
3300024330|Ga0137417_1270541All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300024330|Ga0137417_1436734All Organisms → cellular organisms → Bacteria1194Open in IMG/M
3300025905|Ga0207685_10587592All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium596Open in IMG/M
3300025916|Ga0207663_11274606All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium592Open in IMG/M
3300026304|Ga0209240_1000065All Organisms → cellular organisms → Bacteria37369Open in IMG/M
3300026319|Ga0209647_1351331Not Available500Open in IMG/M
3300026320|Ga0209131_1000965All Organisms → cellular organisms → Bacteria → Acidobacteria19835Open in IMG/M
3300026514|Ga0257168_1133035Not Available554Open in IMG/M
3300026555|Ga0179593_1087593All Organisms → cellular organisms → Bacteria3159Open in IMG/M
3300026555|Ga0179593_1369644All Organisms → cellular organisms → Bacteria3712Open in IMG/M
3300027643|Ga0209076_1009424All Organisms → cellular organisms → Bacteria → Acidobacteria2472Open in IMG/M
3300027645|Ga0209117_1000218All Organisms → cellular organisms → Bacteria33084Open in IMG/M
3300027671|Ga0209588_1275963All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium509Open in IMG/M
3300027674|Ga0209118_1103496Not Available803Open in IMG/M
3300027821|Ga0209811_10220579All Organisms → cellular organisms → Bacteria719Open in IMG/M
3300027846|Ga0209180_10483816Not Available694Open in IMG/M
3300027846|Ga0209180_10638174Not Available585Open in IMG/M
3300027857|Ga0209166_10001018All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae25203Open in IMG/M
3300027862|Ga0209701_10116138All Organisms → cellular organisms → Bacteria → Acidobacteria1661Open in IMG/M
3300027903|Ga0209488_10359025Not Available1082Open in IMG/M
3300027903|Ga0209488_10408277All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300027903|Ga0209488_10467395Not Available927Open in IMG/M
3300028047|Ga0209526_10161060All Organisms → cellular organisms → Bacteria1568Open in IMG/M
3300028536|Ga0137415_10086385All Organisms → cellular organisms → Bacteria2994Open in IMG/M
3300028536|Ga0137415_10280603All Organisms → cellular organisms → Bacteria → Acidobacteria1471Open in IMG/M
3300028536|Ga0137415_10331951All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1324Open in IMG/M
3300031715|Ga0307476_10021694All Organisms → cellular organisms → Bacteria → Acidobacteria4179Open in IMG/M
3300031718|Ga0307474_10805635All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium743Open in IMG/M
3300031753|Ga0307477_10021300All Organisms → cellular organisms → Bacteria4428Open in IMG/M
3300031753|Ga0307477_10055035All Organisms → cellular organisms → Bacteria2736Open in IMG/M
3300031753|Ga0307477_10145023All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1656Open in IMG/M
3300031753|Ga0307477_10213108All Organisms → cellular organisms → Bacteria1342Open in IMG/M
3300031754|Ga0307475_10059329All Organisms → cellular organisms → Bacteria2898Open in IMG/M
3300031754|Ga0307475_10097079All Organisms → cellular organisms → Bacteria → Acidobacteria2294Open in IMG/M
3300031820|Ga0307473_10631766All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300031823|Ga0307478_10135730All Organisms → cellular organisms → Bacteria → Acidobacteria1942Open in IMG/M
3300031823|Ga0307478_11263605All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium614Open in IMG/M
3300031962|Ga0307479_10006987All Organisms → cellular organisms → Bacteria → Acidobacteria10395Open in IMG/M
3300031962|Ga0307479_10542062All Organisms → cellular organisms → Bacteria1146Open in IMG/M
3300031962|Ga0307479_10587793All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300031962|Ga0307479_11526262All Organisms → cellular organisms → Bacteria625Open in IMG/M
3300032174|Ga0307470_10891136All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium698Open in IMG/M
3300032180|Ga0307471_100628852Not Available1234Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil46.15%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.35%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil16.35%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.77%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil4.81%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.81%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.96%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300001545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300002910Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cmEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12683J13190_100109423300001089Forest SoilMPKETAPQQSRFASILTDIHFWVPVAVLIGGLVLLKFLR*
JGI12630J15595_1005126823300001545Forest SoilMQPNKTASRTASILTDIHFWVPVAVLIAGLLLLRSLH*
JGI12635J15846_1075987023300001593Forest SoilMRNETASRQSTFACILTDIHFWVPVAVLIAGLLLLRSFR*
JGI25614J43888_10000230143300002906Grasslands SoilMPNEITPRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLH*
JGI25615J43890_108093013300002910Grasslands SoilMPNEITSRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR*
Ga0070714_10038684423300005435Agricultural SoilMPNETAPRQQRTLASILTDIHFWVPVAVLIGGLTLLTFLR*
Ga0070711_10159652913300005439Corn, Switchgrass And Miscanthus RhizosphereMPPEITRQQIAPKQSTLACILTDVHFWVPVGVLIAGLLLLRSIH*
Ga0070699_10041430813300005518Corn, Switchgrass And Miscanthus RhizosphereMPNETAPRQSTLACILTDIHFWVPVGVLIAGLLLLRSLS*
Ga0073909_1020040123300005526Surface SoilMSNETTTRPSTLACILTDIHFWVPVGVLVAGLLLLRSLS*
Ga0070730_1000124053300005537Surface SoilMSNEISPRPSTFASILTDIHFWVPVAVLIGGLVLLTYLR*
Ga0070730_1023374123300005537Surface SoilMPNANANAPRQSTLHCILTDIHFWVPVAVLAAGLILLSLLS*
Ga0070695_10002652623300005545Corn, Switchgrass And Miscanthus RhizosphereMPGEIAPKQSTLACILTDVHFWVPVVVLIAGLLLLHSLS*
Ga0099791_1035723613300007255Vadose Zone SoilRMPNETAPRRSTFACIFTDIHFWVPVGVLIAGLLLLRSLS*
Ga0099793_1001490423300007258Vadose Zone SoilMPNEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLRFIR*
Ga0099794_1032519123300007265Vadose Zone SoilMPNEIASRQSTFASILTDVHFWVPVAVLIGGLVLLTFLR*
Ga0099794_1062437513300007265Vadose Zone SoilGRMPNEITSRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR*
Ga0099829_1044878123300009038Vadose Zone SoilMPNEIAPRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR*
Ga0099830_1036049123300009088Vadose Zone SoilMPNETAPRQGTLASILTDIHFWVPVAVLIGGLVLLAFLR*
Ga0099830_1073647523300009088Vadose Zone SoilMPNEIASRQSTFASVLTDIHFWVPVAVLIGGLVLLTFLR*
Ga0099796_1030768423300010159Vadose Zone SoilMPNETAPRQSTLACILTDVHFWVPVGVLIAGLLLLRSLS*
Ga0137392_1106168413300011269Vadose Zone SoilQKGRMPNEITPRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLH*
Ga0137392_1133784723300011269Vadose Zone SoilMPNETAPRQGTLASILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137391_1034443013300011270Vadose Zone SoilMPNEITSPQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137388_1092508323300012189Vadose Zone SoilFRKGRMPNEIASRQSTFASILTDVHFWVPVAVLIGGLVLLTFLR*
Ga0137388_1112594923300012189Vadose Zone SoilMPNEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137363_1029018523300012202Vadose Zone SoilMPNETAPRQSTFASILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137363_1030919023300012202Vadose Zone SoilMPTDIAPKQSRLVCILTDVHFWVPVAVLIAGLLLLHSLS*
Ga0137363_1180484523300012202Vadose Zone SoilMPNEIAPRQSTLASILTDIHFWVPVAVLIGGLVLLRFIR*
Ga0137399_1055397923300012203Vadose Zone SoilMPNETAPQQSTLACILTDIHFWVPVSVLIAGLLLLRSLS*
Ga0137399_1077847523300012203Vadose Zone SoilMPTDIAPKQSRLACILTDVHFWVPVAVLIAGILLLHSLS*
Ga0137399_1148918223300012203Vadose Zone SoilMPNETAPRQSTLACILSDIHFWVPLGVLIAGLLLLRSL
Ga0137360_1098252723300012361Vadose Zone SoilMPNETAPRQSTLACILTDIHFWVPVGVLIAGLLLLR
Ga0137361_1013169423300012362Vadose Zone SoilMPTDIAPKQSTLACILTDVHFWVPVAVLIAGLLLLHSLS*
Ga0137398_1037394323300012683Vadose Zone SoilMPNETAPHQSTLACILTDIHFWVPLGVLIAGLLLLRSLS*
Ga0137397_1120264123300012685Vadose Zone SoilMPNEAAPRQTTLACIPTDIHFWVPVGVLIAGLLLLRSLS*
Ga0137395_1051605713300012917Vadose Zone SoilRMPNETAPRQSTLACILTDIHFWVPLGVLIAGLLLLRSLS*
Ga0137396_1073651323300012918Vadose Zone SoilMPNEITPRQSTLASILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137419_1023179523300012925Vadose Zone SoilMPNETAPQQSTLACILTDIHFWVPLGVLIAGLLLLRSLS*
Ga0137416_1032487023300012927Vadose Zone SoilMPKEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137416_1139153923300012927Vadose Zone SoilMPGDIAPKQSTLACILTDVHFWVPVVVLIAGLLLLHSLS*
Ga0137418_1001167323300015241Vadose Zone SoilMPNEITSRQSTLACILTDIHFWVPVAVLIGGLVLLTFLR*
Ga0137418_1002797653300015241Vadose Zone SoilMPNETAPRQSTLACILSDIHFWVPLGVLIAGLLLLRSLS*
Ga0137403_1000873653300015264Vadose Zone SoilMPNETAPRQSTLACILTDIHFWVPLGVLIAGLLLLRSLS*
Ga0179590_100712823300020140Vadose Zone SoilMPNETAPHQSTLACILTDIHFWVPLGVLIAGLLLLRSLS
Ga0179592_1029744623300020199Vadose Zone SoilMPTDIAPKQSTLACILTDVHFWVPVAVLIAGLLLLHSLS
Ga0210407_1001093943300020579SoilMPNEIAPRQSTLASILTDIHFWVPVAVLIGGLVLLAFLR
Ga0210407_1002788043300020579SoilMPNETAPRQSTFASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0210407_1005406933300020579SoilMPNEIAPRQSTLASILTDIHFWVPVAVLIGGLVLLMFLR
Ga0210407_1072253323300020579SoilMPNEIAPRQSTLTSILTDIHFWVPVAVLIGGLVLLTFLR
Ga0210407_1118481223300020579SoilMPNEIAPRQSTFASILTDIHFWVPVAVLIGGLVLLTFLH
Ga0210403_1000615123300020580SoilMPNDIAPRQSTLASILTDIHFWVPVAVLIGGLVLLAFLR
Ga0210399_1071417513300020581SoilRLFLRKGGMPTEIAPKQSTLASILSDIHFWVPVAVLIAGLLLLRSLH
Ga0210401_1008249533300020583SoilMLKEIAPKQSTLASIFTDVHFWVPVAVLIAGLLLLRSLH
Ga0210404_1000408123300021088SoilMQPKDGLPQPSRFASIFTDIHFWVPVAVLIGGLVLLTFLH
Ga0210406_1000303953300021168SoilMPTEIAPKQSTLASILSDIHFWVPVAVLIAGLLLLRSLH
Ga0210400_1000686243300021170SoilMQPKNGSPQQSTLASIFTDIHFWVPVAVLIGGLVLLTFLH
Ga0210405_1007583333300021171SoilMRNEPASRQSTFVCILTDIHFWVPVVVLVAGLLLLRSLR
Ga0210405_1094330523300021171SoilMPNEIAPRQSTLASILTDIHFWVPVALLVGGLVLLAFLR
Ga0210389_1108804813300021404SoilMSNTNTAAPKTQSRVSTILSDVQFWVPVVVLIAGLLLLRFIH
Ga0210402_1142020223300021478SoilMPNEIASRQSTFASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0210409_1011702913300021559SoilKGYMRNEPASRQSTFVCILTDIHFWVPVVVLVAGLLLLRSLR
Ga0137417_127054123300024330Vadose Zone SoilMQPKDGLPQQSRFASIFTDIHFWVPVAVLIGGLVLLTFLH
Ga0137417_143673423300024330Vadose Zone SoilMPNEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLT
Ga0207685_1058759213300025905Corn, Switchgrass And Miscanthus RhizosphereMPPEITRQEIAPKQSTLACILTDVHFWVPVGVLIAGLLLLRSIH
Ga0207663_1127460623300025916Corn, Switchgrass And Miscanthus RhizosphereMPPEITRQQIAPKQSTLACILTDVHFWVPVGVLIAGLLLLRSIH
Ga0209240_100006573300026304Grasslands SoilMPNEITPRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLH
Ga0209647_135133113300026319Grasslands SoilKAGMPGEIAPKQSTLASIFTDVHFWVPVAVLIAGLFLLSYIQ
Ga0209131_100096543300026320Grasslands SoilMPPEITRQQIAPKQSTLACILTDVHFWVPVAVLIAGLLLLRSLH
Ga0257168_113303523300026514SoilMPNEITSRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR
Ga0179593_108759333300026555Vadose Zone SoilMPDEAAPRQSTLACVLTDIHFWVPLGVLIAGLLLLRSLS
Ga0179593_136964413300026555Vadose Zone SoilMPNETAPRQSTLACILSDIHFWVPLGVLIAGLLLLRSSQLTSACNR
Ga0209076_100942423300027643Vadose Zone SoilMPNEIAPRQSTLACILTDIHFWVPVAVLIGGLVLLRFIR
Ga0209117_1000218123300027645Forest SoilMPKETAPQQSRFASILTDIHFWVPVAVLIGGLVLLKFLR
Ga0209588_127596323300027671Vadose Zone SoilGRMPNEITSRQSTLASVLTDIHFWVPVAVLIGGLVLLTFLR
Ga0209118_110349613300027674Forest SoilIAAPLFRKGGMPKETAPQQSRFASILTDIHFWVPVAVLIGGLVLLKFLR
Ga0209811_1022057913300027821Surface SoilMSNETTTRPSTLACILTDIHFWVPVGVLVAGLLLLRSLS
Ga0209180_1048381613300027846Vadose Zone SoilMPNEIASRQSTFASILTDVHFWVPVAVLIGGLVLLTFLR
Ga0209180_1063817413300027846Vadose Zone SoilMPNETAPRQGTLASILTDIHFWVPVAVLIGGLVLLAFLR
Ga0209166_10001018213300027857Surface SoilMSNEISPRPSTFASILTDIHFWVPVAVLIGGLVLLTYLR
Ga0209701_1011613823300027862Vadose Zone SoilMPNEIASRQSTFASVLTDIHFWVPVAVLIGGLVLLTFLR
Ga0209488_1035902523300027903Vadose Zone SoilPNETAPRQGTLASILTDIHFWVPVAVLIGGLVLLAFLR
Ga0209488_1040827713300027903Vadose Zone SoilMPTDIAPKQSTLACIFTDVHFWVPVAVLIAGLLLL
Ga0209488_1046739523300027903Vadose Zone SoilLRPSLGKGRMPNETAPRQSTLACILTDIHFWVPVGVLIAGLLLLRSLS
Ga0209526_1016106033300028047Forest SoilMQPKDGLPQQSRFASIFTDIHFWVPVAVLIGGLVLLTFL
Ga0137415_1008638523300028536Vadose Zone SoilMQTKDGLPQQSRFASIFTDIHFWVPVAVLAGGLVLLTFLH
Ga0137415_1028060323300028536Vadose Zone SoilMPNEITSRQSTLACILTDIHFWVPVAVLIGGLVLLTFLR
Ga0137415_1033195123300028536Vadose Zone SoilMPNETAPRQSTLACILTDIHFWVPLGVLIAGLLLLRSLS
Ga0307476_1002169443300031715Hardwood Forest SoilMPNESAPRQSTFASILTDVHFWVPVGVLIAGLLLLRWLS
Ga0307474_1080563523300031718Hardwood Forest SoilMPDEIAPRQSTLASILTDIHFWVPVAVLIGGLVLLAFLR
Ga0307477_1002130033300031753Hardwood Forest SoilMPNESAPRQSTFASIVTDIHFWVPVGVLIAGLLLLRWLS
Ga0307477_1005503523300031753Hardwood Forest SoilMPNEIAPRQSTLASILTDIHFWVPVAVLIGGLVLLTFLS
Ga0307477_1014502323300031753Hardwood Forest SoilMPNEIASRQSMLASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0307477_1021310823300031753Hardwood Forest SoilMPNEVAPRQSTLASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0307475_1005932933300031754Hardwood Forest SoilMPNEIASRQSMLASVLTDIHFWVPVAVLIGGLVLLTFLR
Ga0307475_1009707923300031754Hardwood Forest SoilMLNEIAPRQSTPARILTDIHFWVPVAVLIGGLVLLTFLR
Ga0307473_1063176623300031820Hardwood Forest SoilMPNEIAPRQSTFASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0307478_1013573023300031823Hardwood Forest SoilMPDEIAPRQSTLASILTDIHFWVPVALLIGGLVLLAFLR
Ga0307478_1126360523300031823Hardwood Forest SoilMPNEVAPRQSTIACILTDIHFWVPVAVLIAGLLLLRSLS
Ga0307479_1000698713300031962Hardwood Forest SoilMPNEIAPRQSTLASILTDIHFWVPVAVLIAGLALLTLLR
Ga0307479_1054206223300031962Hardwood Forest SoilMPNEIAPRQGTFASILTDIHFWVPVAVLIGGLVLLTFLR
Ga0307479_1058779323300031962Hardwood Forest SoilMPNEIAPRQSTLASILTDTHFWVPVAVLIGGLVLLTFLR
Ga0307479_1152626213300031962Hardwood Forest SoilMQPKDGLPQPSRFASIFTDIHFWVPVAVLIGGLVLLTFL
Ga0307470_1089113623300032174Hardwood Forest SoilMPNETSPRRNTIASILTDIHFWVPVVVLIGGLTLLTFLR
Ga0307471_10062885223300032180Hardwood Forest SoilMPNEIAPRQSTVASILTDIHFWVPVVVLVGGLVLLTFLR

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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