NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F096712

Metagenome Family F096712

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F096712
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 50 residues
Representative Sequence MSYDILKAALEKKKAANAPVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Number of Associated Samples 68
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.81 %
% of genes near scaffold ends (potentially truncated) 25.00 %
% of genes from short scaffolds (< 2000 bps) 75.96 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (57.692 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(22.115 % of family members)
Environment Ontology (ENVO) Unclassified
(84.615 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(71.154 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.25%    β-sheet: 0.00%    Coil/Unstructured: 79.75%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01370Epimerase 42.31
PF16363GDP_Man_Dehyd 14.42
PF01041DegT_DnrJ_EryC1 8.65
PF01503PRA-PH 2.88
PF13186SPASM 0.96
PF00487FA_desaturase 0.96
PF01764Lipase_3 0.96
PF02543Carbam_trans_N 0.96
PF16861Carbam_trans_C 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 8.65
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 8.65
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 8.65
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 8.65
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 8.65
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 8.65
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 0.96
COG2192Predicted carbamoyl transferase, NodU familyGeneral function prediction only [R] 0.96
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 0.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A57.69 %
All OrganismsrootAll Organisms42.31 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000162|TB03JUN2009H_c033742Not Available529Open in IMG/M
3300002408|B570J29032_109051123Not Available578Open in IMG/M
3300002408|B570J29032_109861946All Organisms → cellular organisms → Bacteria → Proteobacteria1738Open in IMG/M
3300004686|Ga0065173_1033939Not Available930Open in IMG/M
3300004691|Ga0065176_1012856Not Available779Open in IMG/M
3300005528|Ga0068872_10241365Not Available1017Open in IMG/M
3300005580|Ga0049083_10095492Not Available1032Open in IMG/M
3300005581|Ga0049081_10009448All Organisms → cellular organisms → Bacteria3699Open in IMG/M
3300005581|Ga0049081_10018225All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2661Open in IMG/M
3300005582|Ga0049080_10087710All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1063Open in IMG/M
3300005582|Ga0049080_10165159Not Available739Open in IMG/M
3300005582|Ga0049080_10215695Not Available632Open in IMG/M
3300005582|Ga0049080_10300654Not Available518Open in IMG/M
3300005585|Ga0049084_10206388Not Available670Open in IMG/M
3300005805|Ga0079957_1004936All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10979Open in IMG/M
3300005805|Ga0079957_1052276All Organisms → cellular organisms → Bacteria → Proteobacteria2494Open in IMG/M
3300006129|Ga0007834_1047719Not Available1023Open in IMG/M
3300007165|Ga0079302_1125726Not Available524Open in IMG/M
3300008117|Ga0114351_1144974All Organisms → Viruses → Predicted Viral1837Open in IMG/M
3300008259|Ga0114841_1028980Not Available4952Open in IMG/M
3300009059|Ga0102830_1181951Not Available615Open in IMG/M
3300009068|Ga0114973_10392824Not Available727Open in IMG/M
3300009155|Ga0114968_10021510All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4430Open in IMG/M
3300009158|Ga0114977_10384969Not Available784Open in IMG/M
3300009159|Ga0114978_10004030Not Available11935Open in IMG/M
3300009159|Ga0114978_10078047All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2219Open in IMG/M
3300009164|Ga0114975_10439052Not Available708Open in IMG/M
3300009164|Ga0114975_10494131Not Available660Open in IMG/M
3300009180|Ga0114979_10241103Not Available1085Open in IMG/M
3300010885|Ga0133913_10059999All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10200Open in IMG/M
3300010885|Ga0133913_11508195All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1702Open in IMG/M
3300012006|Ga0119955_1073852All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1004Open in IMG/M
3300012012|Ga0153799_1056412Not Available718Open in IMG/M
3300013004|Ga0164293_10221851Not Available1352Open in IMG/M
3300013004|Ga0164293_10276626All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1173Open in IMG/M
3300013005|Ga0164292_10478667Not Available819Open in IMG/M
(restricted) 3300013132|Ga0172372_10512764All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage791Open in IMG/M
3300017761|Ga0181356_1101812All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage934Open in IMG/M
3300017784|Ga0181348_1272480Not Available577Open in IMG/M
3300020141|Ga0211732_1436615All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage659Open in IMG/M
3300020151|Ga0211736_10269293Not Available1130Open in IMG/M
3300020151|Ga0211736_10508543All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4137Open in IMG/M
3300020151|Ga0211736_10794531Not Available705Open in IMG/M
3300020159|Ga0211734_10942943Not Available1353Open in IMG/M
3300020159|Ga0211734_10965222All Organisms → Viruses → Predicted Viral1549Open in IMG/M
3300020160|Ga0211733_10429034Not Available544Open in IMG/M
3300020160|Ga0211733_10716735All Organisms → cellular organisms → Bacteria1431Open in IMG/M
3300020160|Ga0211733_10729745All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage630Open in IMG/M
3300020160|Ga0211733_10858130Not Available579Open in IMG/M
3300020162|Ga0211735_10999679All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1810Open in IMG/M
3300020162|Ga0211735_11586976Not Available678Open in IMG/M
3300020172|Ga0211729_11227116All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1220Open in IMG/M
3300020205|Ga0211731_10172967All Organisms → Viruses → Predicted Viral2220Open in IMG/M
3300020205|Ga0211731_10940537Not Available546Open in IMG/M
3300021139|Ga0214166_1040432All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1056Open in IMG/M
3300021142|Ga0214192_1015044All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2933Open in IMG/M
3300021961|Ga0222714_10590564Not Available556Open in IMG/M
3300021962|Ga0222713_10039792Not Available3690Open in IMG/M
3300021962|Ga0222713_10686671All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon586Open in IMG/M
3300021963|Ga0222712_10003170All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage18153Open in IMG/M
3300021963|Ga0222712_10276067All Organisms → cellular organisms → Bacteria → Proteobacteria1064Open in IMG/M
3300023174|Ga0214921_10083865All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon2499Open in IMG/M
3300023174|Ga0214921_10379559Not Available734Open in IMG/M
3300023184|Ga0214919_10016777Not Available8506Open in IMG/M
3300023184|Ga0214919_10089872All Organisms → Viruses → Predicted Viral2669Open in IMG/M
3300023184|Ga0214919_10369252Not Available947Open in IMG/M
3300024346|Ga0244775_11447495Not Available527Open in IMG/M
3300025382|Ga0208256_1034510Not Available720Open in IMG/M
3300025387|Ga0207959_1013490Not Available1417Open in IMG/M
3300025418|Ga0208253_1048913Not Available722Open in IMG/M
3300025424|Ga0208617_1035090Not Available1024Open in IMG/M
3300027608|Ga0208974_1005116All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4535Open in IMG/M
3300027608|Ga0208974_1050269All Organisms → Viruses → Predicted Viral1200Open in IMG/M
3300027631|Ga0208133_1134917Not Available571Open in IMG/M
3300027649|Ga0208960_1119658Not Available688Open in IMG/M
3300027659|Ga0208975_1060143All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1150Open in IMG/M
3300027744|Ga0209355_1237608Not Available723Open in IMG/M
3300027754|Ga0209596_1014431Not Available5005Open in IMG/M
3300027756|Ga0209444_10057928All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1718Open in IMG/M
3300027759|Ga0209296_1303894Not Available633Open in IMG/M
3300027763|Ga0209088_10224316Not Available792Open in IMG/M
3300027763|Ga0209088_10269123Not Available701Open in IMG/M
3300027798|Ga0209353_10452796Not Available518Open in IMG/M
3300031758|Ga0315907_10067789All Organisms → cellular organisms → Bacteria3098Open in IMG/M
3300031759|Ga0316219_1002081Not Available19416Open in IMG/M
3300031759|Ga0316219_1010443Not Available5328Open in IMG/M
3300031759|Ga0316219_1027816All Organisms → cellular organisms → Bacteria2559Open in IMG/M
3300031759|Ga0316219_1044684All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1852Open in IMG/M
3300031857|Ga0315909_10055448All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3635Open in IMG/M
3300031857|Ga0315909_10199346All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1588Open in IMG/M
3300034018|Ga0334985_0417122Not Available799Open in IMG/M
3300034064|Ga0335001_0428582Not Available708Open in IMG/M
3300034071|Ga0335028_0162003All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1415Open in IMG/M
3300034093|Ga0335012_0085372All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1779Open in IMG/M
3300034093|Ga0335012_0123610All Organisms → cellular organisms → Bacteria1430Open in IMG/M
3300034102|Ga0335029_0006259Not Available9342Open in IMG/M
3300034102|Ga0335029_0175275All Organisms → cellular organisms → Bacteria → Proteobacteria1446Open in IMG/M
3300034102|Ga0335029_0445498Not Available768Open in IMG/M
3300034102|Ga0335029_0485075Not Available722Open in IMG/M
3300034102|Ga0335029_0541566Not Available666Open in IMG/M
3300034283|Ga0335007_0581844Not Available652Open in IMG/M
3300034283|Ga0335007_0648456Not Available601Open in IMG/M
3300034283|Ga0335007_0774166Not Available525Open in IMG/M
3300034284|Ga0335013_0141948All Organisms → cellular organisms → Bacteria → Proteobacteria1641Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater22.12%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater16.35%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake13.46%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic11.54%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater8.65%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake5.77%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater4.81%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water4.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater2.88%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.92%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.92%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake1.92%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.92%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine0.96%
Deep SubsurfaceEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface0.96%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000162Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnionEnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300004686Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (version 2)EnvironmentalOpen in IMG/M
3300004691Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (version 2)EnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006129Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07EnvironmentalOpen in IMG/M
3300007165Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16EnvironmentalOpen in IMG/M
3300008117Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008259Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NAEnvironmentalOpen in IMG/M
3300009059Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.703EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009159Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaGEnvironmentalOpen in IMG/M
3300009164Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300017761Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020162Freshwater lake microbial communities from Lake Erken, Sweden - P4710_201 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020205Freshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1EnvironmentalOpen in IMG/M
3300021139Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnionEnvironmentalOpen in IMG/M
3300021142Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 epilimnionEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021963Estuarine water microbial communities from San Francisco Bay, California, United States - C33_657DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300023184Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025382Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)EnvironmentalOpen in IMG/M
3300025387Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)EnvironmentalOpen in IMG/M
3300025418Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Oct08 (SPAdes)EnvironmentalOpen in IMG/M
3300025424Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07 (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027649Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027744Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027756Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031759Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003PEnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300034018Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME04Jul2014-rr0021EnvironmentalOpen in IMG/M
3300034064Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME14Nov2013-rr0054EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034093Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jun2014-rr0072EnvironmentalOpen in IMG/M
3300034102Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034284Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME08Jul2016-rr0075EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
TB03JUN2009H_03374223300000162FreshwaterMSYDILKAALEKKKAANAPAKKGSKVDTKGSPVKSQVSGNKPAKKSAGRGR*
B570J29032_10905112323300002408FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDSKGGPVKSQVSGNKPAKKSAGRGR*
B570J29032_10986194623300002408FreshwaterMAYDVLKAALEKKKQANAPVKKGNKIDSKDAPIRNQVASHKPAKKSAGRGR*
Ga0065173_103393923300004686FreshwaterMAYDILKAALEKKKQQNAPTKKGSKVDAKGPGVHSQVTSNKPAKKSAGRGR*
Ga0065176_101285633300004691FreshwaterMAYDVLKAALEKKKQQNAPAKKGTKVDTKGPGVHSQVTSNKPAKKSAGRGR*
Ga0068872_1024136523300005528Freshwater LakeMAYDILKAALEKKKQANAPAKKGSKVDTKGGPAKSQVSGNKPAKKSAGRGR*
Ga0049083_1009549223300005580Freshwater LenticMSYDILKAALEKKKAANAPVKKSSKVDNKGPGVHSQVTSNKPAKKSAGRGR*
Ga0049081_1000944853300005581Freshwater LenticKAALEKKKQQQGHGIKQSKADKSNGSVKDQVTSHKPTKKSAGRGR*
Ga0049081_1001822543300005581Freshwater LenticMSYDILKAALAKKQAANAPVKKGSKHDNKSPGVHSQVTSNKPAKKSAGRGR*
Ga0049080_1008771023300005582Freshwater LenticMAYDILKAALEKKKAANAPLKKGSKVDTKGNPVRDQVTSHKPAKKSAGRGR*
Ga0049080_1016515913300005582Freshwater LenticALEKKKQQQQQGVKGSKVDSKGGPVKSQVTVNKPTKKSAGRGR*
Ga0049080_1021569523300005582Freshwater LenticMSYDILKAALAKKQAANAPVKKGSKLDTKGPGVHSQVTSNKPAKKSAGRGR*
Ga0049080_1030065423300005582Freshwater LenticMTYDILKAALEKKKQQQQQGVKGSKVDNKGPGVRSQVTSNKPAKKSAGRGR*
Ga0049084_1020638823300005585Freshwater LenticMSYDILKAALEKKKAANAPVKKGSKHDSKGAPVKDQVTSHKPAKKSAGRGR*
Ga0079957_1004936123300005805LakeMSYDILKAALEKKKAANAPVKKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR*
Ga0079957_105227663300005805LakeMAYDILKAALEKKKQQQQQGVKGSKVDSKGAPVRDQVTSHKPAKKSAGRGR*
Ga0007834_104771913300006129FreshwaterDILKAALEKKKQQNAPTKKGSKVDAKGPGVHSQVTSNKPAKKSAGRGR*
Ga0079302_112572623300007165Deep SubsurfaceMSYDILKAALEKKKAANAPVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR*
Ga0114351_114497443300008117Freshwater, PlanktonILKAALEKKKQANAPAKKGSKVDTKGGPAKSQVSGNKPAKKSAGRGR*
Ga0114841_102898073300008259Freshwater, PlanktonMGRIGENNMAYDILKAALEKKKQANAPAKKGSKVDTKGGPAKSQVSGNKPAKKSAGRGR*
Ga0102830_118195123300009059EstuarineMSYDILKAALEKKKQQQQQGVKGSKIDSKGPGVHSQVTSNKPAKKSAGRGR*
Ga0114973_1039282423300009068Freshwater LakeMSYDILKAALAKKQAANAPVKKGSKVDNKSPGVHSQVTSNKPAKKSAGRGR*
Ga0114968_1002151053300009155Freshwater LakeMSNDIIKAALEKKKQQQQQGVKGSKVDSKGPGVHSQVNSNKPAKKSAGRGR*
Ga0114977_1038496923300009158Freshwater LakeMSYDILKAALEKKKQQQQQGVKGSKVDTKGPGVHSQVNSNKPAKKSAGRGR*
Ga0114978_1000403083300009159Freshwater LakeMSYDILKAALEKKKAANAPVKKGSKVDNKSPGVHSQVTSNKPAKKSAGRGR*
Ga0114978_1007804723300009159Freshwater LakeMSYDILKAALEKKKQQQQQGIKGSKVDSKGGPVKSQVNGNKPAKKSAGRGR*
Ga0114975_1043905223300009164Freshwater LakeMSYDILKAALEKKKAANAPVKKGSKVDNKGAPVKSQVTVNKPTKKSAGRGR*
Ga0114975_1049413133300009164Freshwater LakeMSYDILKAALEKKKQANAPVKKGSKVDTKGGPARSQVTTNKPTKK
Ga0114979_1024110333300009180Freshwater LakeMSYDILKAALAKKQAANAPVKKDSKYGNKSPGVHSQVTSNKPAKKSAGRGR*
Ga0133913_1005999933300010885Freshwater LakeMSYDILKAALEKKKAANAPVKKGSKVDNKSPGAHSQVTSNKPAKKSAGRGR*
Ga0133913_1150819533300010885Freshwater LakeMSYDILKAALEKKKQANAPVKKGSKVDNKSPGVHSQVTSNKPAKKSAGRGR*
Ga0119955_107385233300012006FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDNKGPGAHSQVTSNKPAKKSAGRGR*
Ga0153799_105641223300012012FreshwaterMSYDILKAALEKKKAANAPVKKGSKLDTKGPGVHSQVTSNKPAKKSAGRGR*
Ga0164293_1022185133300013004FreshwaterMSYDILKAALEKKKQQQQQGVKSSKVDNKGPGVHSQVTSNKPAKKSAGRGR*
Ga0164293_1027662623300013004FreshwaterMSYDILKAALEKKKQANAPVKKGSKVASKGPGVHSQVTSNKPAKKSAGRGR*
Ga0164292_1047866713300013005FreshwaterKAALEKKKQQQQQGVKGSKVDSKGGPVKSQVTANKPTKKSAGRGR*
(restricted) Ga0172372_1051276433300013132FreshwaterMAYDILKAALEKKKQQQGHGVKQSKADKSSTAKDQVTSHKPAKKSAGRGR*
Ga0181356_110181213300017761Freshwater LakeMSYDILKAALEKKKQQQQQGVKSSKVDSKGVPVKSQVTVNKPTKKSAGRGR
Ga0181348_127248033300017784Freshwater LakeMSYDILKAALAKKQAANAPVKKGSKLDTKGHGVHSQVTSNKPAKKSAGRGR
Ga0211732_143661513300020141FreshwaterMSAYSDMLKAALEKKKQQQGQGKKGSKAGTESGPIKDQVASHKPAKKSAGR
Ga0211736_1026929323300020151FreshwaterMSYDILKAALEKKKAANAPVKKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0211736_1050854363300020151FreshwaterMSAYSDMLKAALEKKKQQQGQGKKGSKAGTESGPIKDQVASHKPAKKSAGRGR
Ga0211736_1079453123300020151FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDSKGPGVHSQVTSNKPAKKSAGRGR
Ga0211734_1094294323300020159FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0211734_1096522223300020159FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDSKGGPVKSQVAVNKPTKKSAGRGR
Ga0211733_1042903423300020160FreshwaterMSYDILKAALEKKKQANAPVKKGSKVDNKGPSVHSQVTSNKPAKKSAGRGR
Ga0211733_1071673513300020160FreshwaterMSYDILKAALEKKKAANAPVKKGSKVDTKGAPVRDQVTSHKPAKKSAGRGR
Ga0211733_1072974533300020160FreshwaterMAYDVLKAALEKKKAANATVKKGSKIDSKGAPVRDQVASHKPAKKSAGRGR
Ga0211733_1085813033300020160FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0211735_1099967953300020162FreshwaterMSAYSDMLKAALEKKKQQQGQGKKGSKAGTESGPIKDQVASHKPAKKSAGRG
Ga0211735_1158697623300020162FreshwaterEKKKQANAPAKKGSKIDSKGAPVKDQVTSHKPAKKSAGRGR
Ga0211729_1122711623300020172FreshwaterMSYDILKAALEKKKQANAPAKKGSKIDSKGAPVKDQVTSHKPAKKSAGRGR
Ga0211731_1017296713300020205FreshwaterDILKAALEKKKAANAPVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0211731_1094053733300020205FreshwaterMSYDILKAALEKKKQANAPVKKGSKVDTKGGPVKSQVTANKPTKKSAGRG
Ga0214166_104043223300021139FreshwaterAALEKKKAANAPQKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0214192_101504423300021142FreshwaterMAYDVLKAALEKKKQQNAPVKKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0222714_1059056413300021961Estuarine WaterMAYDVLKAALEKKKQQQQQCVKGSKVDNKSPGVHSQVTSNKPAKKSAGRGR
Ga0222713_1003979263300021962Estuarine WaterNGENKMAYDILKAALEKKKQANAPAKKGSKIDSKGAPIKDQVASHKPAKKSAGRGR
Ga0222713_1068667113300021962Estuarine WaterMAYDILKAALEKKKQQQGHGVKQSKADKGNGSVKDQVTSHKPAKKSA
Ga0222712_10003170363300021963Estuarine WaterMAYDILKAALEKKKQANAPAKKGSKIDSKGAPIKDQVASHKPAKKSAGRGR
Ga0222712_1027606713300021963Estuarine WaterMAYDILKAALEKKKQANTPVKKGSKIDGKGAPVRDQVTSHKPAKK
Ga0214921_1008386533300023174FreshwaterMSYDILKAALEKKKQANAPVKKGSKVDTKGPGVHSQVNSNKPAKKSAGRGR
Ga0214921_1037955923300023174FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDSKSPGVHSQVTSNKPTKKSAGRGR
Ga0214919_1001677793300023184FreshwaterMSYDILKAALEKKKAANAPAKKGSKVDTKGGPVKSQVSGNKPAKKSAGRGR
Ga0214919_1008987263300023184FreshwaterMSYDILKAALEKKKQQQQQGVKGSKVDTKGPGVHSQVNSNKPAKKSAGRGR
Ga0214919_1036925223300023184FreshwaterMSYDILKAALEKKKAANAPVKKGSKVDNKSTGVHSQVTSNKPAKKSAGRGR
Ga0244775_1144749523300024346EstuarineMSYDILKAALAKKQAANAPVKKGSKVDNKSPGVHSQVTSNKPAKKSAGRGR
Ga0208256_103451023300025382FreshwaterVLKAALEKKKQQNAPAKKGTKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0207959_101349043300025387FreshwaterMAYDVLKAALEKKKQQNAPAKKGTKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0208253_104891313300025418FreshwaterILKAALEKKKQQNAPTKKGSKVDAKGPGVHSQVTSNKPAKKSAGRGR
Ga0208617_103509023300025424FreshwaterDILKAALEKKKQQNAPTKKGSKVDAKGPGVHSQVTSNKPAKKSAGRGR
Ga0208974_100511653300027608Freshwater LenticMSYDILKAALAKKQAANAPVKKGSKHDNKSPGVHSQVTSNKPAKKSAGRGR
Ga0208974_105026923300027608Freshwater LenticMAYDILKAALEKKKAANAPLKKGSKVDTKGNPVRDQVTSHKPAKKSAGRGR
Ga0208133_113491733300027631EstuarineMSYDILKAALEKKKQQQQQGVKGSKVDTKGPGAHSQVTSNKPAKKSA
Ga0208960_111965833300027649Freshwater LenticMSYDILKAALEKKKAANAPVKKGSKHDSKGAPVKDQVTSHKPAKKSAGRGR
Ga0208975_106014313300027659Freshwater LenticEKKKQQQGHGIKQSKADKSNGSVKDQVTSHKPTKKSAGRGR
Ga0209355_123760823300027744Freshwater LakeMSYDILKAALAKKQAANAPVKKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0209596_101443153300027754Freshwater LakeMSNDIIKAALEKKKQQQQQGVKGSKVDSKGPGVHSQVNSNKPAKKSAGRGR
Ga0209444_1005792823300027756Freshwater LakeMSYDILKAALEKKKQQQQQGVKGSKVDSKGVPVKSQVTVNKPTKKSAGRGR
Ga0209296_130389423300027759Freshwater LakeMSYDILKAALEKKKAANAPVKKGSKVDNKGAPVKSQVTVNKPTKKSAGRGR
Ga0209088_1022431623300027763Freshwater LakeMSYDILKAALEKKKAANAPVKKGSKVDNKSPGAHSQVTSNKPAKKSAGRGR
Ga0209088_1026912323300027763Freshwater LakeMSYDILKAALEKKKQQQQQGIKGSKVDSKGGPVKSQVNGNKPAKKSAGRGR
Ga0209353_1045279613300027798Freshwater LakeMSYDILKAALEKKKQQQQQGVKGSKVDNKGPGVHSQVTSNKP
Ga0315907_1006778973300031758FreshwaterMAYDILKAALEKKKQANAPAKKGSKVDTKGGPAKSQVSGNKPAKKSAGRGR
Ga0316219_100208193300031759FreshwaterMAYDVLKAALEKKKQQNAPTKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0316219_101044333300031759FreshwaterMAYDILKAALEKKKAANAPQKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0316219_102781633300031759FreshwaterMSYDILKAALEKKKAANAPAKKGSKVDTKGSPVKSQVSGNKPAKKSAGRGR
Ga0316219_104468433300031759FreshwaterMAYDILKAALEKKKQQNAPTKKGSKVDAKGPGVHSQVTSNKPAKKSAGRGR
Ga0315909_1005544843300031857FreshwaterMAYDVLKAALEKKKQQQQQGVKGSKVDSKGSPVKSQVSGNKPAKKSAGRGR
Ga0315909_1019934633300031857FreshwaterMAYDVLKAALEKKKQQQQQGVKGSQVDNKGAPVKSQVSGNKPAKKSAGRGR
Ga0334985_0417122_91_2463300034018FreshwaterMSYDILKAALEKKKAANAPVKKGSKVDSKGGPVKSQVSGNKPAKKSAGRGR
Ga0335001_0428582_226_3813300034064FreshwaterMSYDILKAALEKKKAANALVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0335028_0162003_331_4863300034071FreshwaterMSYDILKAALEKKKAANAPVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0335012_0085372_1521_16763300034093FreshwaterMSYDILKAALEKKKAANAPVKKGSKGDNKSPGVHSQVTSNKPAKKSAGRGR
Ga0335012_0123610_3_1433300034093FreshwaterLKAALEKKKQANAPAKKGSKIDSKGAPVKDQVTSHKPAKKSAGRGR
Ga0335029_0006259_8369_85243300034102FreshwaterMSYDILKAALEKKKQQQQQGVKGSKHDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0335029_0175275_2_1363300034102FreshwaterAALEKKKAANAPVKKGSKVDTKGPGVHSQVTSNKPAKKSAGRGR
Ga0335029_0445498_626_7663300034102FreshwaterLKAALEKKKQQQQQGVKGSKVDSKGGPVKSQVSGNKPAKKSAGRGR
Ga0335029_0485075_63_2183300034102FreshwaterMAYDVLKAALEKKKQANAPVKKGNKIDSKDAPIRNQVASHKPAKKSAGRGR
Ga0335029_0541566_211_3663300034102FreshwaterMSYDILKAALEKKKQANAPVKKGSKVDTKGAPVKSQVTVNKPTKKSAGRGR
Ga0335007_0581844_506_6523300034283FreshwaterDILKAALEKKKAANAPVKKGSKVDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0335007_0648456_317_4723300034283FreshwaterMSYDILKAALAKKQAANAPVKKGSKVDSKGAPVKSQVTANKPTKRSAGRGR
Ga0335007_0774166_2_1333300034283FreshwaterALEKKKQQQQQGVKGSKHDNKGPGVHSQVTSNKPAKKSAGRGR
Ga0335013_0141948_498_6533300034284FreshwaterMSYDILKAALEKKKQANAPVKKGSKVASKGPGVHSQVTSNKPAKKSAGRGR


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