Metagenome / Metatranscriptome Family F096789

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F096789
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	60 residues
Representative Sequence	MLENEIDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKTIDDQVAECTEQMERKRGRR
Number of Associated Samples	66
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	4.81 %
% of genes from short scaffolds (< 2000 bps)	8.65 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (87.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.077 % of family members)
Environment Ontology (ENVO)	Unclassified (28.846 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.231 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.23% β-sheet: 0.00% Coil/Unstructured: 39.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00891	Methyltransf_2	7.69
PF07238	PilZ	4.81
PF00903	Glyoxalase	1.92
PF00221	Lyase_aromatic	1.92
PF00072	Response_reg	0.96
PF14907	NTP_transf_5	0.96
PF04055	Radical_SAM	0.96
PF07228	SpoIIE	0.96
PF00101	RuBisCO_small	0.96
PF13466	STAS_2	0.96
PF07715	Plug	0.96
PF01740	STAS	0.96
PF00589	Phage_integrase	0.96
PF00355	Rieske	0.96
PF02803	Thiolase_C	0.96
PF07589	PEP-CTERM	0.96
PF00484	Pro_CA	0.96
PF05649	Peptidase_M13_N	0.96
PF10996	Beta-Casp	0.96
PF07690	MFS_1	0.96
PF00361	Proton_antipo_M	0.96
PF00171	Aldedh	0.96
PF01068	DNA_ligase_A_M	0.96
PF04384	Fe-S_assembly	0.96
PF07920	DUF1684	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	1.92
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.96
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.96
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.96
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.96
COG2975	Fe-S-cluster formation regulator IscX/YfhJ	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG3358	Uncharacterized conserved protein, DUF1684 family	Function unknown [S]	0.96
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.96
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.96
COG4451	Ribulose bisphosphate carboxylase small subunit	Carbohydrate transport and metabolism [G]	0.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
All Organisms	root	All Organisms	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
cellular organisms	root	All Organisms → cellular organisms	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.65 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.88 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.88 %
Cyanobacteria bacterium 13_1_20CM_4_61_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005439\|Ga0070711_100806473	Not Available	796	Open in IMG/M
3300006162\|Ga0075030_100282211	All Organisms → cellular organisms → Bacteria → Acidobacteria	1329	Open in IMG/M
3300007076\|Ga0075435_101617275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300009038\|Ga0099829_10658786	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300017822\|Ga0187802_10011337	All Organisms → cellular organisms → Bacteria	2890	Open in IMG/M
3300020579\|Ga0210407_10331726	Not Available	1189	Open in IMG/M
3300020580\|Ga0210403_10004233	All Organisms → cellular organisms → Bacteria	12398	Open in IMG/M
3300020580\|Ga0210403_10010311	All Organisms → cellular organisms → Bacteria → Acidobacteria	7621	Open in IMG/M
3300020581\|Ga0210399_10013389	Not Available	6447	Open in IMG/M
3300021180\|Ga0210396_10110774	All Organisms → cellular organisms → Bacteria → Acidobacteria	2480	Open in IMG/M
3300021479\|Ga0210410_10001067	All Organisms → cellular organisms → Bacteria	26632	Open in IMG/M
3300021559\|Ga0210409_10220494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1723	Open in IMG/M
3300026374\|Ga0257146_1006329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1935	Open in IMG/M
3300026551\|Ga0209648_10073270	All Organisms → cellular organisms → Bacteria → Acidobacteria	2876	Open in IMG/M
3300026551\|Ga0209648_10205677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_20CM_4_61_6	1497	Open in IMG/M
3300027862\|Ga0209701_10582187	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.08%
Host-Associated	Host-Associated	1.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.08%
Aquatic	Environmental → Aquatic	25.00%
Plants	Host-Associated → Plants	1.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.08%
Freshwater	Environmental → Aquatic → Freshwater	24.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Sediment	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.65%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.04%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.58%
Loam	Environmental → Terrestrial → Soil → Loam	3.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	21.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.35%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.08%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	21.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.58%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.96%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028146	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK23	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25617J43924_101677592	3300002914	Grasslands Soil	MSATVVDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL*
Ga0062389_1015947122	3300004092	Bog Forest Soil	VLETAIDEKKERRELKTKRSQLFERFLKNPLDIRLALEIKIIDDQVAEWVNQKEAQREVWR*
Ga0058899_118496702	3300004631	Forest Soil	MPETGINEKRKREELKARRNLLFRIYLKNPLETRLALEIKIIDDQVAASMAR*
Ga0058899_118646322	3300004631	Forest Soil	MPETAIDAKRELEEWKTRRNLLLRIYLKNPLETRLALEIKVIDDPVAASVAR*
Ga0066388_1002800404	3300005332	Tropical Forest Soil	MIENEIDAKWKREGLRTARKLLFKRFLKNPLDTRLALKIKTVDDQIAECDGQIEQKRKGRN*
Ga0070711_1008064732	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MHQTPIDAVRKREQLKAKRNLLFRRFLQNPLETHLALEIKIIDDQVAECTANERKRGPKHKT*
Ga0070732_100237262	3300005542	Surface Soil	MSVVITGEKKEREALKARRNLLFQRYLKAPQDTRLALEIKLIDDQVAKFTEQIDRKRASNN*
Ga0075030_1002822114	3300006162	Watersheds	MSATVVDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAESTKRLERKRGSRN*
Ga0075425_1011916752	3300006854	Populus Rhizosphere	MQETPIDAMRKREELRAKKTLLFRRFLQNPLETRLALEIKAIEPSRSSPEAL*
Ga0075435_1016172751	3300007076	Populus Rhizosphere	VLETAIEERKKREELKAKRNLLFDRYLKHPMDTRLALEIKIIDDQLAEERKLPSKRSG
Ga0099829_106587861	3300009038	Vadose Zone Soil	MSAAVIDEKREREALKAKRNVLFERYLKAPLDTRLALEIKIIDDQVAEYTKQMERKR
Ga0099830_104009192	3300009088	Vadose Zone Soil	MSATVVDEKREREALKAKRNLLFERYLKAPLDTRLALEIKIIDDQVAEYNKQMERKRESRN*
Ga0099830_116525081	3300009088	Vadose Zone Soil	MSAAVIDEKREREALKAKRNVLFERYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRSSGNCF*
Ga0136449_1034487361	3300010379	Peatlands Soil	VLENAIDVLRKREELKAQRSLLFARFLENPLETQLALKIKIIDDQVAECCEKMRQTREKRY*
Ga0137392_101578143	3300011269	Vadose Zone Soil	MSAAVIDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL*
Ga0137391_102645712	3300011270	Vadose Zone Soil	MSAAVIDEKREREALKAKRNVLFERYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRSSGNCL*
Ga0137391_103279851	3300011270	Vadose Zone Soil	MSATVVDEKREREALKAKRNLLFERYLKAPLDTRLALEIKIIDDQVAKYTKQMERKRSSGNCL*
Ga0137389_108864312	3300012096	Vadose Zone Soil	VHSMSATVVDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL*
Ga0137388_108839341	3300012189	Vadose Zone Soil	AYTSYEVHSMSATVVDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL*
Ga0137363_109617971	3300012202	Vadose Zone Soil	MQATPFNAMRKREELKAQRNLLFKRFSRNPLDTSLALKIKIIDDQIAASDEQMERE
Ga0137390_107561722	3300012363	Vadose Zone Soil	MSATVVDEKREREALKAKRNLLFERYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL*
Ga0153915_101120052	3300012931	Freshwater Wetlands	VLETAIDEKGKRDKLKAKRNLLFERFLKNPLDTRLALEIKIIDDQVAECTDQMERKRGRRN*
Ga0181527_10348721	3300014153	Bog	MLENEIDARRKREELKAKRNLIFARFLKNPLHTRLALEIKIIDDQIAECTDQMQQKRKGRN*
Ga0137412_104002093	3300015242	Vadose Zone Soil	MQATPFNAMRKREELKAQRNLLFKRFSRNPLDTSLALKIKIIDDQIAASDEQMERER
Ga0187802_100113373	3300017822	Freshwater Sediment	MQETAINAMRKREELKAQRNRLFKRFLRNPLDTHLALKIKVIDDQVAECTEQME
Ga0187802_100146033	3300017822	Freshwater Sediment	MQETPIDAKRKREELKVVRNLLFKRFLKNPLDTHLALKIKTIDYQVAECAEQMALMTESR
Ga0187802_101522552	3300017822	Freshwater Sediment	MLESEIDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKTIDDQVAECTEQMERKRGRR
Ga0187818_100004579	3300017823	Freshwater Sediment	MLANEVDARRKREELKAKRNLLFKWFLKNPLDTRLALKIKIIDDQVAECTEQMERKRGRR
Ga0187818_100032844	3300017823	Freshwater Sediment	MPENAIDARKKREELKAKRNLLFRRFLKNPQDIHLALRIKRIDDRLAECAEKMEQKRAGR
Ga0187818_100393393	3300017823	Freshwater Sediment	MLESEIDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKTIDDQVAECTEQMERKRGKR
Ga0187814_100757301	3300017932	Freshwater Sediment	MQETAINAMRKREELKAQRNLLFKRFLRSPLDTHLALKIKVIDDQVAECTEQMERKRGKR
Ga0187801_100736111	3300017933	Freshwater Sediment	VLENVIDVLKKREELKAKRNLLFARFLNNPLETQLALKIKIIDDQVAECCEQMRQRRKER
Ga0187801_100889721	3300017933	Freshwater Sediment	MLEEEIDARRKREELKAKRNLLFQQFLRNPRDTRLALKIKTIDDQVAKCTAQMERKRETR
Ga0187801_101812012	3300017933	Freshwater Sediment	REILKAKRYLLFARFLKNPSDTRLALEIKIIDDQVAECVKQMQQQGEKRNRVQRLFFQI
Ga0187801_102899421	3300017933	Freshwater Sediment	MPKNEMDARKKCEKLKATRNILFRHFLKNPLDTRLALKIKTIDDQIAECTEQMKQRREER
Ga0187803_101130911	3300017934	Freshwater Sediment	MLENAIDVRRKREELKSKRNLLFQQFLKNPLDTRLALRIKTIDDQVAECTEQMARMKERR
Ga0187808_105079941	3300017942	Freshwater Sediment	MLENEIDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKTIDDQVAECTEQMERKRGRR
Ga0187819_1000246910	3300017943	Freshwater Sediment	MLANEVDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKIIDDQVAECTEQMERKRGRR
Ga0187819_102337221	3300017943	Freshwater Sediment	MLEDAIDARKKREELKAKRNLLFQRFLKNPLDTRLALKIKIIDDQIAECTVQMEQKRAGR
Ga0187819_104705272	3300017943	Freshwater Sediment	MLENEIDARRKREELKAKRNLLFKRFLKNPLDTRLALKIKTIDDQVAECTEQME
Ga0187817_104027231	3300017955	Freshwater Sediment	MQETAIDAKKKRERLKAKRDLLFARFLKNPSDTRLALEIKIIDDQVAECVKQMQQQGEKRNRVQRLFFQI
Ga0187817_104325911	3300017955	Freshwater Sediment	VLENVIDVLKKREELKAKRNLLFARFLNNPLETQLALKIKIIDDQVAECCVRQMRKERD
Ga0187779_100025387	3300017959	Tropical Peatland	MLENVIDAKKKREELKSKRNLLFQRFLKNPHNIRLALRIKRIDDRIAEFTEQMEQKRAGR
Ga0187778_100736571	3300017961	Tropical Peatland	MLENAIDVRRKREELKAKRNLLFQQFLKNPLDTRLALKIKTIDDQVAECAEQMARMKERR
Ga0187778_106026681	3300017961	Tropical Peatland	KREELKSKRNLLFQRFLKNPHNIRLALRIKRIDDRIAEFTEQMEQKRAGRY
Ga0187781_100070932	3300017972	Tropical Peatland	MLLELSRMLENVIDARKKREELKAKRNLLFQRFLKNPHNIRMALRINRIDDRIAEFTEQMEQKRAGGS
Ga0187780_100083643	3300017973	Tropical Peatland	MLLELSRMLENVIDAKKKREELKSKRNLLFQRFLKNPHNIRLALRIKRIDDRIAEFTEQMEQKRAGRY
Ga0187780_112705801	3300017973	Tropical Peatland	MLENVIDARKKREELKAKRNLLFQRFLKNPHNIRLALRIKRIDDRIAEFTEQMEQKRAGR
Ga0187815_103368091	3300018001	Freshwater Sediment	MLESEIDARRKREELKAKRNLLFRRFLKNPQDIHLALRIKRIDDRLAECAEKMEQKRAGR
Ga0187804_103994222	3300018006	Freshwater Sediment	MLENAIDVRRKREELKAKRNLLFQQFLKNPLDTRLALRIKTIDDQVAECTEQMARMKERR
Ga0187810_100818622	3300018012	Freshwater Sediment	MLEEEIDARRKREELKAKRNLLFQQFLRNPRDIRLALKIKTIDDQVAKCTAQMERKRETR
Ga0187810_101057342	3300018012	Freshwater Sediment	MLENEIDALRKREELKAKRNLLFQRFLKNPLDTRLALKIKIIDDQIAECTVQMEQKRAGR
Ga0187784_109360322	3300018062	Tropical Peatland	MLENVIDARKKREELKAKRNLLFQRFLKNPHNIRMALRINRIDDRIAEFTEQMEQKRAGR
Ga0187772_100078023	3300018085	Tropical Peatland	MLLELSRMLENAIDARKKREELKAKRNLLFQRFLKNPHNIRMALRINRIDDRIAEFTEQMEQKRAGRN
Ga0187771_100988702	3300018088	Tropical Peatland	MLENVIDVRRKREELKAKRNLLFERFLKNPLDTRLALKIKTIDDQVAEYTEQMARMKDRR
Ga0187771_102621532	3300018088	Tropical Peatland	MLEEEIDARRKREELKAKRNLLFQQFLRNPRDTRLALKIKTIDDQVAKCTEQMERKRETR
Ga0187771_112548001	3300018088	Tropical Peatland	SPFFHAFVKELSRMLQNAIDVSRRREELKAKRNLLFQRFLKNSLDTRLALKIKTIDDPVAECTEQMERMKERRK
Ga0210407_100067178	3300020579	Soil	MQETSIDAMRKREKLKAKRNLLFQRFLKNPLETHLALEIKIIDDQVAECSELVGRKHGPDHKT
Ga0210407_102599772	3300020579	Soil	MQETSINAMRKREELNATRNLLFKRFLKNPMDTHLALEIKSIDDQVAECMERMRQNRKRR
Ga0210407_103317262	3300020579	Soil	MQETPIDAMRKREELKRTRNRLFKRFRKHPMDTYLALKIKTIDDQVAECSEQMRQEKKQRDTTLVP
Ga0210407_103444121	3300020579	Soil	LLENAIDVLRKREELKAKRNLLFARFLKNPLDTQLALKIKIIDDQVAEC
Ga0210403_1000342612	3300020580	Soil	MQETPIDTMRKREELKRTRNLLFKQFLKNPVDTRLALKIKSIDDQVAECSERMRQNRKIR
Ga0210403_100042338	3300020580	Soil	MLENETNAKWNREGLRAARKLLFRRFLKNPLDTRMALKIKTLDDQIAECDGQMEQKKKGR
Ga0210403_1001031111	3300020580	Soil	MQETPIDAMRKREELKGTRNLLFKRFLKNPMDTRLALKIKSIDDQVAECSERMRQNRKRR
Ga0210403_105044741	3300020580	Soil	MLENASDARKKCKELKAKRNLLFARFLKNPRDTHLAVKIKIIDDQIVEYTEKMERKKERR
Ga0210403_105409272	3300020580	Soil	VLETAIDAKTKREELKAKRNLLFARFLKNPLDTHLALEIKIIDDLVAEWTEQMEPDREGL
Ga0210399_100133892	3300020581	Soil	MLENEINAKWKREGLRAARKLLFRRFLKNPLDTRMALEIKTLDDQIAECDGQMEQKKKGR
Ga0210399_103916162	3300020581	Soil	KPFAHAFRKELTRVLETAIDMKRKREELKAKRNPLFARFLKDPLDTRLALEIKIIDDLVAESAEQLQEERAKRD
Ga0210399_107256761	3300020581	Soil	VLETAIDVKTKREELKAKRNLLFARFLKNPLDTHLALEIKIIDDLVAEWTEQMEPDREGL
Ga0210406_113541092	3300021168	Soil	MQETPIDAMRKREELKRTRNRLFKRFRKHPMDTYLALKIKTIDDQVAECSEQMRQE
Ga0210400_101977512	3300021170	Soil	MQETPLDAMRKREELKRTRNRLFKRFRKHPMDTYLALKIKTIDDQVAECSEQMRQEKKQRDTTLVP
Ga0210405_104068661	3300021171	Soil	MLENEINAKWKREGLRAARKLLFRRFLKNPLDTRMALTIKTLDDQIAECDGQMEQQKKGR
Ga0210396_101107742	3300021180	Soil	MQETPIDAMRKREELKRTRNRLFKRFRKHPMDTYLALIIKTIDDQVAECSEQMRQENKQRDTTLVP
Ga0210387_114509311	3300021405	Soil	FAHAFRKKPTRVLETAIDMKRKREELKAKRNPLFARFLKDPLDTRLALEIKIIDDLVAESAEQLQEERAKRD
Ga0210410_1000106720	3300021479	Soil	MQETPIDAMRKCEELKRTRNRLFKRFLKHPMDTYLALIIKTIDDQVVECSEQMRQENKQRDTTLVP
Ga0210409_102204941	3300021559	Soil	MQETPFNPVRKREELKAQRKLLFRRFLRNPQDTRLALKIKIIDDQIAACTEQIE
Ga0210409_111502432	3300021559	Soil	MQETPFNPMRKREELKAQRKLLFRRFLRNPQDTRLALKIKIIDDQIAACTEQIE
Ga0257146_10063295	3300026374	Soil	MQETPINAMTKREELKATRNLLFKQFLKNPMDTHLALKIKSIDDQVAECMERMRQNRKRR
Ga0257171_10114692	3300026377	Soil	MQETPINAMRKREELNATRNLLFKRFLKNPMDTHLALKIKSIDDQVAECMERMRQNRKRR
Ga0209648_100732704	3300026551	Grasslands Soil	MSATVVDEKREREALKAKRNLLFARYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSRNCL
Ga0209648_101583253	3300026551	Grasslands Soil	VLETAIDVKRKREELKAKRNLIFARFLKDPLDTHLALEIKIIDDLVAEWTEQMEQKREAR
Ga0209648_102056773	3300026551	Grasslands Soil	MSAAVIDEKREREALKAKRNVLFERYLKAPLDTRLALEIKIIDDQVAEYTKQMERKRGSR
Ga0209580_100976782	3300027842	Surface Soil	MSVVITGEKKEREALKARRNLLFQRYLKAPQDTRLALEIKLIDDQVAKFTEQIDRKRASN
Ga0209517_104853201	3300027854	Peatlands Soil	NGIDAMNKREELKAKRNLLFQRFLKNPQDIRLALKIKMIDDQIAECTEQVEQKRAGRN
Ga0209701_105821872	3300027862	Vadose Zone Soil	MSAAVIDEKREREALKAKRNVLFERYLKAPLDTRLALEIKIIDDQVAEYTKQME
Ga0247682_11114201	3300028146	Soil	MLENEINAGWKREGLRAARKLLFRRFLKNPLDTRMALTIKTLDDQIAECDGQMEQKKKGGTKV
Ga0170834_1072614231	3300031057	Forest Soil	VLETAIDMKRKREELKAKRNPLFARFLKDPLDTRLALEIKIIDDLVAESAEQMQEERAKR
Ga0307497_103825252	3300031226	Soil	VLENVIDVLKKREELKAKRNLLFARFLNNPLETQLAVKIKIIDDQVAECW
Ga0170824_1080682682	3300031231	Forest Soil	VLRKREELKAKRNLLFARFLKNPLDTQLALTIKLIDDQVAECSEKVQQMREKRY
Ga0170824_1103533092	3300031231	Forest Soil	VLENLIDVLKKREELKAKRNLLFARFLNNPLETQLALRIKIIDDQVAECCEQMRQMREER
Ga0170824_1256824301	3300031231	Forest Soil	MQETPIDAMTKREELKGTRNLLFKRFLKNPMDTRLALKIKSIDDQVAECTERMRQNRKRR
Ga0170820_145074322	3300031446	Forest Soil	VLENLIDVLKKREELKAKRNLLFARFLNNPLETQLALKIKIIDDQVAECCEQMRQMREER
Ga0170820_149271412	3300031446	Forest Soil	VLETAIDMKRKREELKAKRNPLFARFLKDPLDTRLALEIKIIDDLVAESA
Ga0170818_1096547222	3300031474	Forest Soil	VLETAIDMKRKREELKAKRNPLFARFLKDPLDTRLALEIKIIDDQVAECVKQKQQQREKR
Ga0307469_102843753	3300031720	Hardwood Forest Soil	VLRKREELKAKRNLLFARFLKNPLDTQLALKIKLIDDQVAECSEKVQQMREKWY
Ga0318546_112420951	3300031771	Soil	MQETPIDSTRKREELKAKRNLLFRRFLQNPLETHLALEIKIIDDQVAEC
Ga0307470_101186073	3300032174	Hardwood Forest Soil	MQETPIDAMRKRAELKRTRNRLFKRFLKHPMDTYLALIIKTIDDQVAECSEQMRQANKQRDWSEPLE
Ga0307471_1005712821	3300032180	Hardwood Forest Soil	MHGTPIDAMRKREELKAKRNLLFRRFLQNPLETHLALEIKIIDDQVAECAELMKRKHGPKHKT
Ga0307471_1006851611	3300032180	Hardwood Forest Soil	MQETPIDAMRKREELKRTRNRLFKRFRKHPMDTYLALIIKTIDDQVAECSEQMRQANKQR
Ga0307471_1007991611	3300032180	Hardwood Forest Soil	MLENEINAKWKREGLRAARKLLFRRFLKNPLDIGMALKIKTLDDQIAECDGQMEQKKKGR
Ga0307471_1010058122	3300032180	Hardwood Forest Soil	EFTRVRENAIDVLRKREELKAKRNLLFARFLKNPLDTQLALKIKIIDDQVAECSEQMQQMREKRY
Ga0307472_1000759273	3300032205	Hardwood Forest Soil	VLENAIDVLRKREELKAKRNLLFARFLKNPLDTQLALKIKIIDDQVAECSEQMQQMREKR
Ga0307472_1006445041	3300032205	Hardwood Forest Soil	VLENVIDVLKKREELKAKRNLLFARFLNNPLETQLALKIKIIDDQVAECCEQMRQDERRTRLVRRSFFQV
Ga0307472_1010358561	3300032205	Hardwood Forest Soil	MIENEIDAKWKREGLRAARKLLFKRFLKNPLDSRLALKIKTMDDQIAEYDGQMEQKREGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F096789

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences