NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F097519

Metagenome / Metatranscriptome Family F097519

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F097519
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 46 residues
Representative Sequence ESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARK
Number of Associated Samples 92
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(48.077 % of family members)
Environment Ontology (ENVO) Unclassified
(86.538 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(69.231 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 14.86%    β-sheet: 0.00%    Coil/Unstructured: 85.14%
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51015202530354045ESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARKSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

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Marine
Deep Ocean
Seawater
Seawater
Marine
Marine Oceanic
Marine
Marine
Marine
Seawater
Marine
Marine
Seawater
Salt Marsh
Marine
Marine
Estuarine Water
Hydrothermal Vent Plume
Deep Subsurface
Volcanic Co2 Seeps
48.1%2.9%2.9%4.8%2.9%2.9%6.7%9.6%2.9%2.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Deep_101652813300001781Hydrothermal Vent PlumeKESYFPNQTKQDENVDQESDVSEVEETPKMNDIMEAYSKAIARK*
Vondamm_1010438523300001783Hydrothermal Vent PlumeNQTKQDANVEQESDVPEVEETPEMSNIMEAYSKAIARK*
shallow_110669423300001845Hydrothermal Vent PlumeESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARK*
GOS2216_1012172123300001972MarineTIKESYFPNQVKQDENIDQKDVVSEDSPSEETPKMNNIMEAYSKAISRK*
Ga0005234J37281_104684913300002776MarineESYFPSQVKKDEVISEDSVSSEEQEETPVKMNNIMEAYSKAIAR*
Ga0066860_1026990513300005399MarineFENKIKTIKESYFPNQTKQDENVEQESDVSSDGEEVSDPKLNNIMEAYSKAIARK*
Ga0066868_1000562913300005508MarineNGVKQDENVEQEDVSSEDSEETPVKMNNIMEAYSKAIARN*
Ga0066834_1007365923300005596MarineKTIKESYFPNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN*
Ga0066369_1022634923300005969MarineGDVEDFESKVKQIKESYFPSQVKKDEVISEEGVSSEDQEETPVKMNNIMEAYSHAIARK*
Ga0066373_1010987123300006011MarineKQDANVEQESDDSPTEETPEMTNIMEAYSKAIARN*
Ga0082015_105300413300006090MarineQDENVEQEDVSSEDSEETPVKMNNIMEAYSKAIARN*
Ga0082019_103725313300006093MarineADNFENKVKTIKESYFPNQTKQDANVEQESDVPETEETPEMSNIMEAYSKAIARN*
Ga0068504_134267923300006304MarineESYFPNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN*
Ga0068471_135756453300006310MarineNQTKQDANVEQESDDSPTEETPEMNNIMEAYSKAIARN*
Ga0068471_139428913300006310MarineNQTKQDANVEQESDGSEAEETPEMNNIMEAYSKAIARN*
Ga0068477_126532713300006326MarineLIEGVSYENDADDFENKVKTIKESYFPNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN*
Ga0068502_190522113300006336MarineQTIKESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARN*
Ga0099957_109010863300006414MarineQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN*
Ga0098035_111269823300006738MarineENKVKMIKESYFPNQVKQDENIEQEDVVSEEEVTEETPKMNNIMEAYSKAIARK*
Ga0098058_110072823300006750MarineESYFPNQVKQDENIEQEDVVSEEEVTEETPKMNNIMEAYSKAIARK*
Ga0098039_101836943300006753MarineKQDGNIEQKDVVTEDSPSEETPKMNNIMEAYTKAMTRK*
Ga0098044_127288323300006754MarineEGVSYDEDADNFENKVKTIKESYFPNQTKQDANVEQESDVPETEETPEMSNIMEAYSKAIARN*
Ga0098054_124282713300006789MarineNKVKTIKESYFPNQTKQDANVEQESDVPETEETPEMSNIMEAYSKAIARN*
Ga0066376_1059648013300006900MarineEGVSYEDDADDFENKITTIKESYFPNQTKQDQNVDQESDVSSDGEEVSDPKLNNIMEAYSKAIARK*
Ga0066376_1075748423300006900MarineNQTKQDQNVDQESDVSEVEETPEMNNIMEAYSKAIARK*
Ga0066372_1099068413300006902MarineNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN*
Ga0098057_117100523300006926MarineVKQDGNIEQKDVVTEDSPSEETPKMNNIMEAYTKAMTRK*
Ga0101672_106825323300007152Volcanic Co2 SeepsNKVKMIKESYFPNQVKQDENIEQEDVVSDEEVTQETPKMNNIMEAYSKAIARQ*
Ga0079247_165969023300007330MarineKVKTIKENYFPNQVKQDENVEQESDVTSEESEETPVKMNNIMEAYSKAIARN*
Ga0098052_133362123300008050MarineKQDANVEQENDDSPTEETPEMNNIMEAYSKAIARK*
Ga0114916_115805213300008221Deep OceanDFESKVKQIKESYFPSQVKKDEVISEEGVSSEDQEETPVKMNNIMEAYSQAIAR*
Ga0114996_1036688013300009173MarineKQDGNVEQEDVMANDSEETPVKVSNIMEAYSKAIARK*
Ga0114996_1129336713300009173MarineEDFESKVKQIKESYFPSQVKKDEVISEEGVSSEDQEETPVKMSNIMEAYSHAIARK*
Ga0118716_124457513300009370MarineDNKKQDENVEQVDASDGEEVSEPKMNSIMEAYSKAIARK*
Ga0114993_10007175143300009409MarinePNQQKQDGNVEQEDVMANDSEETPVKVSNIMEAYSKAIARK*
Ga0114993_1045151213300009409MarinePNQQKQDGNVEQEDVMANDSEETPVKVSNIMEAYSKAIARN*
Ga0114993_1127483613300009409MarineDVEDFESKVKQIKESYFPSQVKKDEVISEENVSSEDQEETPVKMNNIMEAYSQAIAR*
Ga0114932_1004414913300009481Deep SubsurfaceKTIKENYFPETIKQDENVEQLDSSSEVSEKSEPKMNHIMEAYSKAIARK*
Ga0114932_1014977813300009481Deep SubsurfaceKESYFPNQVKQDENIDQKDVVSEDSPSEEAPKMNNIMEAYSQAIARK*
Ga0115004_1033307913300009526MarinePSQVKKDEVISEENVSSEDQEETPVKMNNIMEAYSQAIAR*
Ga0105228_11924313300009613Marine OceanicYFPNQTKQDANVEQESDDSPTEETPEMTNIMEAYSKAIARN*
Ga0105236_105838913300009619Marine OceanicKIKTIKESYFPNQTKQDANVEQESDDSPTEETPEMNNIMEAYSKAIARN*
Ga0115001_1036804823300009785MarineYFPSQVKKDEVISEESVSSEEQEETPVKMNNIMEAYSKAIARN*
Ga0114999_1027429223300009786MarineGNVEQEDVMANDSEETPVKVSNIMEAYSKAIARK*
Ga0114934_1053504313300011013Deep SubsurfaceQVKQDENIDQKDVVSEDSPSEEAPKMNNIMEAYSQAIARK*
Ga0138349_114886913300011312Deep OceanKESYFPNQTKQDENVEQESDVPETEETPEMSNIMEAYSKAIARN*
Ga0138359_100763013300011322MarineDDADDFENKVKTIKENYFPNQTKQDENVEQESDVTAEDGEETPVKVSNIMEQYAKAIARN
Ga0138388_120323413300011328MarineIKESYFPNQQKQDENVEQENAGSDEEVSPEMNSIMEAYSKAIARK*
Ga0181590_1023219823300017967Salt MarshNQVKQDENIEQEYVVSEDEVSEETTKMNNIMEAYSRAIARK
Ga0181591_1086229813300018424Salt MarshADDFENKVKMIKESYFPNQVKQDENIEQEDVVSEDEVSEETPKMNNIMEAYSKAIARK
Ga0211631_104467913300020271MarineDADDFENKVKTIKESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARN
Ga0211613_114170423300020353MarineSYFPESKKQDENVEQLDSSSEVTEKSEEPKMNHIMEAYSKAIARK
Ga0211636_1032633213300020400MarineFENKVKMIKESYFPNQVKQDENIEQEDVVSEEEVDETPKMNNIMEAYSKAIARK
Ga0211532_1037889813300020403MarineDFENKVKMIKESYFPNQVKQDENIEQEDVVSDEEVTQETPKMNNIMEAYSKAIARQ
Ga0211475_1039450723300020468MarineMIKESYFPNQVKQDENIEQEDVVSEEEVDETPKMNNIMEAYSKAIARK
Ga0211543_1059171713300020470MarineENKVKMIKESYFPNQVKQDENIEQEDVVSDEEVTQETPKMNNIMEAYSKAIARQ
Ga0206688_1071591713300021345SeawaterIKENYFPETIKKDENVEQLDSSSEVAEKSEPKMNHIMEAYSKAIARK
Ga0206689_1045457823300021359SeawaterFPNQQKQDENVEQVDASDGEEVSEPKMNNIMEAYSKAIARK
Ga0206689_1075178813300021359SeawaterFPDNKKQDENVEQVDASDGEEVSEPKMNNIMEAYSKAIARK
Ga0222717_1039817823300021957Estuarine WaterQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN
(restricted) Ga0233438_1011713613300024255SeawaterDEVISEESVSSEDQEETPVKMSNIMEAYSHAIARN
Ga0207900_11550013300025029MarineKIKTIKESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARK
Ga0208011_110306123300025096MarineNKKQDENVEQVDASDGEEVSDPKMNSIMEAYSKAIARK
Ga0208553_111685113300025109MarineKENYFPDNKKQDENVEQVDASDGEEVSEPKMNSIMEAYSKAIARK
Ga0208790_119076313300025118MarineYFPNQTKQDANVEQESDVPETEETPEMSNIMEAYSKAIARN
Ga0207903_106459423300025287Deep OceanQNVDQESDVSSDGEEVSDPKLNNIMEAYSKAIARK
Ga0209662_113263213300025596MarineTLIEGVSYENDADDFENKVMMIKENYFPNQTKQDENVEQESDVSYNGEEVSEPKMNNIMEAYSKAIARK
Ga0209045_106502713300025660MarinePNQTKQDENVEQESDVSYNGEEVSEPKMNNIMEAYSKAIARK
Ga0209775_121724123300025663MarineKQDENVEQESDVSYNGEEVSEPKMNNIMEAYSKAIARK
Ga0208274_112803313300026188MarineKESYFPNGVKQDENVEQEDVSSEDSEETPVKMNNIMEAYSKAIARN
Ga0207984_101652113300026202MarineKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN
Ga0208131_105767713300026213MarineDFENKVKTIKESYFPNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARN
Ga0208639_102861633300026256MarineKTIKESYFPNQTKQDENVEQVDASEGEEVSEPKMNNIMEAYSKAIARN
Ga0208896_103842623300026259MarineKQDENIEQKDVVTEDSPSEETPKMNNIMEAYSQAIARK
Ga0209019_109228323300027677MarineENFEEKVKTIKENYFPDNKKQDENVEQVDASDGEEVSEPKMNSIMEAYSKAIARK
Ga0209554_105691923300027685MarineFESKVKQIKESYFPSQVKKDEVISEESVSSEDQEETPVKMNNIMEAYSQAIARK
Ga0209830_1044462023300027791MarineYFPSQVKKDEVISEENVSSEDQEETPVKMNNIMEAYSQAIAR
Ga0257126_107697013300028287MarineYFPSQVKKDEVISEDSVSSEEQEETPVKMNNIMEAYSKAIARK
Ga0183748_105748723300029319MarineSYFPNQVKQDENIEQEDVVSEDEVSEETPKMNSIMEAYSKAIARK
Ga0308136_107704713300030728MarineSYFPSQVKKDEVISEESVSSEEQEETPVKMNNIMEAYSKAIARN
Ga0308022_106696613300031142MarineKKDEVISEESVSSEDQEETPVKMNNIMEAYSQAIARK
Ga0308022_115928223300031142MarineIKESYFPSQVKKDEVISEEGVSSEDQEETPVKMNNIMEAYSHAIARN
Ga0308022_116033423300031142MarineQKQDENVEQVDLSSDGEEKTAPKMNQIMEAYSKAIARN
Ga0308010_108942513300031510MarineKDEVISEEGVSSEDQEETPVKMNNIMEAYSQAIARN
Ga0308010_109066923300031510MarineIKESYFPSQVKKDEVISEESVSSEDQEETPVKMNNIMEAYSHAIARK
Ga0308135_103743013300031559MarineKKDEVISEESVSSEEQEETPVKLNNIMEAYSKAIARN
Ga0308132_101525413300031580MarineESYFPNQIKQDENVEQESDASVDGEEVSEPKLNNIMEAYSKAIARN
Ga0308125_102418313300031581MarineVKKDEVISEESVSSEEQEETPVKLNNIMEAYSKAIARN
Ga0302119_1003582213300031606MarinePNQTKQDENVEQESDVSSDGEEVSEPKLNNIMEAYSKAIARN
Ga0308004_1015424913300031630MarineIKESYFPSQVKKDEVISEESVSSEDQEETPVKMNNIMEAYSQAIARK
Ga0307986_1019237013300031659MarineSKVKQIKESYFPSQVKKDEVISEDSVSSEEQEETPVKMNNIMEAYSVAIARK
Ga0308016_1011460623300031695MarineNFEEKVKTIKENYFPNQQKQDENVEQVDLSSDGEEKTAPKMNQIMEAYSKAIARN
Ga0307995_128940023300031696MarineESYFPSQVKKDEVISEDSVSSEEQEETPVKMNNIMEAYSKAIARD
Ga0308013_1009248623300031721MarineDSDNFEEKVKTIKENYFPNQQKQDENVEQVDLSSDGEETTAPKMNQIMEAYSKAIARK
Ga0315332_1027326723300031773SeawaterKQDENVEQVDASDGEEVSDPKMNSIMEAYSKAIARK
Ga0310122_1042750223300031800MarineTIKESYFPNQTKQDENVEQESDVSEVEETPEMNNIMEAYSKAIARK
Ga0310120_1041882123300031803MarineNKVKTIKESYFPNQIKQDENVEQESDVSVDGEEVSDPKLNNIMEAYSKAIARN
Ga0315318_1058025813300031886SeawaterKVKTIKESYFPSQVKQDENIEQKDVVTEDSPSEETPKMNNIMEAYSQAIARK
Ga0315329_1024668923300032048SeawaterKDDFENKVKTIKESYFPNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN
Ga0315304_120053413300032145MarineDFENKVKTIKESYFPNQTKQDENVEQESDASVDGEEVSEPKLNNIMEAYSKAIARN
Ga0315303_101375413300032146MarineNKVKTIKESYFPNQTKQDDNVEQESDVSEVEETPKMNDIMEAYSKAIARN
Ga0315303_107032623300032146MarineESYFPNQTKQDENVEQESDASVDGEEVSEPKLNNIMEAYSKAIARN
Ga0310342_10132097713300032820SeawaterQDENVEQVDASDGEEVSEPKMTNIMEAYSKAIARK
Ga0310342_10255148223300032820SeawaterDDFENKVKTIKESYFPNQTKQDENVEQESDGSSDGEEVSDPKLNNIMEAYSKAIARN


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