Basic Information | |
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Family ID | F097576 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 64 residues |
Representative Sequence | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLANKL |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 74.04 % |
% of genes near scaffold ends (potentially truncated) | 30.77 % |
% of genes from short scaffolds (< 2000 bps) | 92.31 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.61 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (66.346 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.115 % of family members) |
Environment Ontology (ENVO) | Unclassified (44.231 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (68.269 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.83% β-sheet: 2.17% Coil/Unstructured: 50.00% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.61 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 104 Family Scaffolds |
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PF13610 | DDE_Tnp_IS240 | 2.88 |
PF01402 | RHH_1 | 1.92 |
PF13518 | HTH_28 | 1.92 |
PF07592 | DDE_Tnp_ISAZ013 | 1.92 |
PF00484 | Pro_CA | 1.92 |
PF00072 | Response_reg | 0.96 |
PF05015 | HigB-like_toxin | 0.96 |
PF04226 | Transgly_assoc | 0.96 |
PF01609 | DDE_Tnp_1 | 0.96 |
PF07929 | PRiA4_ORF3 | 0.96 |
PF00248 | Aldo_ket_red | 0.96 |
PF02694 | UPF0060 | 0.96 |
PF13751 | DDE_Tnp_1_6 | 0.96 |
PF02518 | HATPase_c | 0.96 |
PF12697 | Abhydrolase_6 | 0.96 |
PF02416 | TatA_B_E | 0.96 |
PF03413 | PepSY | 0.96 |
PF03400 | DDE_Tnp_IS1 | 0.96 |
PF12441 | CopG_antitoxin | 0.96 |
PF13495 | Phage_int_SAM_4 | 0.96 |
COG ID | Name | Functional Category | % Frequency in 104 Family Scaffolds |
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COG0288 | Carbonic anhydrase | Inorganic ion transport and metabolism [P] | 1.92 |
COG1662 | Transposase and inactivated derivatives, IS1 family | Mobilome: prophages, transposons [X] | 0.96 |
COG1742 | Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily | General function prediction only [R] | 0.96 |
COG1826 | Twin-arginine protein secretion pathway components TatA and TatB | Intracellular trafficking, secretion, and vesicular transport [U] | 0.96 |
COG2261 | Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family | General function prediction only [R] | 0.96 |
COG3039 | Transposase and inactivated derivatives, IS5 family | Mobilome: prophages, transposons [X] | 0.96 |
COG3293 | Transposase | Mobilome: prophages, transposons [X] | 0.96 |
COG3385 | IS4 transposase InsG | Mobilome: prophages, transposons [X] | 0.96 |
COG3549 | Plasmid maintenance system killer protein | Defense mechanisms [V] | 0.96 |
COG5421 | Transposase | Mobilome: prophages, transposons [X] | 0.96 |
COG5433 | Predicted transposase YbfD/YdcC associated with H repeats | Mobilome: prophages, transposons [X] | 0.96 |
COG5659 | SRSO17 transposase | Mobilome: prophages, transposons [X] | 0.96 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 66.35 % |
All Organisms | root | All Organisms | 33.65 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 22.12% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 10.58% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 9.62% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 6.73% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 4.81% |
Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 3.85% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.85% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 3.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 3.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 3.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 3.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 3.85% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 2.88% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.92% |
Microbial Mat On Rocks | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks | 1.92% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 1.92% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.92% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.96% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.96% |
Host-Associated | Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated | 0.96% |
Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.96% |
Miscanthus Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere | 0.96% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.96% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.96% |
Avena Fatua Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere | 0.96% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
3300004157 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2 | Environmental | Open in IMG/M |
3300004268 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio | Environmental | Open in IMG/M |
3300004801 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) | Host-Associated | Open in IMG/M |
3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Host-Associated | Open in IMG/M |
3300005341 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG | Environmental | Open in IMG/M |
3300005347 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG | Host-Associated | Open in IMG/M |
3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Environmental | Open in IMG/M |
3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Environmental | Open in IMG/M |
3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Environmental | Open in IMG/M |
3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Host-Associated | Open in IMG/M |
3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Host-Associated | Open in IMG/M |
3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Host-Associated | Open in IMG/M |
3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) | Host-Associated | Open in IMG/M |
3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
3300006880 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Host-Associated | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300007255 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 | Environmental | Open in IMG/M |
3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Host-Associated | Open in IMG/M |
3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
3300009092 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG | Host-Associated | Open in IMG/M |
3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
3300009147 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) | Host-Associated | Open in IMG/M |
3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
3300012204 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG | Environmental | Open in IMG/M |
3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012469 | Combined assembly of Soil carbon rhizosphere | Host-Associated | Open in IMG/M |
3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
3300012897 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1 | Environmental | Open in IMG/M |
3300012922 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG | Environmental | Open in IMG/M |
3300012923 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG | Environmental | Open in IMG/M |
3300012929 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300015264 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
3300018052 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2 | Environmental | Open in IMG/M |
3300018053 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1 | Environmental | Open in IMG/M |
3300018056 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1 | Environmental | Open in IMG/M |
3300018063 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2 | Environmental | Open in IMG/M |
3300018432 | Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T | Environmental | Open in IMG/M |
3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
3300019356 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2) | Environmental | Open in IMG/M |
3300019360 | White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG | Environmental | Open in IMG/M |
3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) | Environmental | Open in IMG/M |
3300026023 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300027846 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) | Environmental | Open in IMG/M |
3300027873 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes) | Host-Associated | Open in IMG/M |
3300027907 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) | Host-Associated | Open in IMG/M |
3300027909 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes) | Host-Associated | Open in IMG/M |
3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300031908 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1 | Environmental | Open in IMG/M |
3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
3300032013 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3 | Environmental | Open in IMG/M |
3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
3300034662 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300034663 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300034664 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300034667 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300034670 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300034678 | Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1006025422 | 3300000364 | Soil | ALVAKGGESMSTRQAYYEELAELSEHEPLTLHEVCQYVGWTPTMRQEVSTLGRLCTQYGIRTTEDWQVLANKL* |
INPhiseqgaiiFebDRAFT_1006067772 | 3300000364 | Soil | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTMRQEVSTLGRLCTQYGIRTTEDWQVLANKL* |
Ga0062590_1026987812 | 3300004157 | Soil | LHGHLSTEPWTRYSRSMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL* |
Ga0066398_100390833 | 3300004268 | Tropical Forest Soil | MNNLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTREEAGVLARLCTQYGIRTTGDWHEWAEKL* |
Ga0058860_121578413 | 3300004801 | Host-Associated | YEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL* |
Ga0070670_1009415321 | 3300005331 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL* |
Ga0070666_101555091 | 3300005335 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIERLCTQYGIQTTEDWQALANKL* |
Ga0070691_104775492 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0070668_1016520872 | 3300005347 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIQTTEDWQALANKL* |
Ga0070700_1001470051 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSIIVRLCTQYGIQTTEDWQVLADQL* |
Ga0070663_1005300612 | 3300005455 | Corn Rhizosphere | ELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL* |
Ga0070685_107477651 | 3300005466 | Switchgrass Rhizosphere | AELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQMLANKL* |
Ga0070698_1001469693 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSNLQAYYEELAELSEQEPLTLHEVCQYVGWTPTTREEAGVLERLCTQYGIRTTGDWHVWAKKL* |
Ga0070698_1002486622 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSNLQAYYEELAELSEQEPLTLREVCQYVGWTPTTREETGVIAQLCQQYGIRTTIDWQLWAENL* |
Ga0070686_1012194932 | 3300005544 | Switchgrass Rhizosphere | YYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLANKL* |
Ga0068866_104074272 | 3300005718 | Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSIIVRLCTQYGIQTTED |
Ga0068861_1018972891 | 3300005719 | Switchgrass Rhizosphere | MTRYSRSMSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0066903_1003976451 | 3300005764 | Tropical Forest Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTREEAGVLARLCTQYGIRTTGDWHEWAEKL* |
Ga0066903_1070635101 | 3300005764 | Tropical Forest Soil | MSTLQVYYEELAELSEHEPLTLPEVCQYVGWTPRTRAEADRMARLCTQYGIRTTDDWRVW |
Ga0068858_1016921731 | 3300005842 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLANKL* |
Ga0075417_103197212 | 3300006049 | Populus Rhizosphere | MSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0097621_1001246272 | 3300006237 | Miscanthus Rhizosphere | EELAELSEHGPLTLQEVCQYIGWTPNTREEAGLMARLCTQYGIQTTEDWLVWAKKL* |
Ga0075425_1003109242 | 3300006854 | Populus Rhizosphere | MTNLQAYYEDLAELSEQEPLTWQEVCQYVGWAPTTREEAGVLARLCTQYGIRTTGDWHEWAEKL* |
Ga0075429_1007541451 | 3300006880 | Populus Rhizosphere | MTRYSRSMRTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0068865_1020188051 | 3300006881 | Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQVLADKL* |
Ga0099791_105370401 | 3300007255 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLPEVCQYVGWTPTTREETGIIARLCTQYGIRTTGDWQVWADNL* |
Ga0099794_101352574 | 3300007265 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLPEVCQYIGWTPTNREETGVIARLCNQYGIRTTGDWQVWADNL* |
Ga0105251_101481041 | 3300009011 | Switchgrass Rhizosphere | TEPWTRYSRSMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL* |
Ga0066710_1019374912 | 3300009012 | Grasslands Soil | MTNLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTREEAGVLARLCTQYGIRTTVDWHEWAEKL |
Ga0099829_100308282 | 3300009038 | Vadose Zone Soil | MSKLQTYYEELAELSEHAPLTLHEVCQYIGWIPTNSEEAGVIARLCNQYGIRTTGDWQVWADNL* |
Ga0099830_105558473 | 3300009088 | Vadose Zone Soil | MSKLQTYYEELAELSEHAPLTLPEVCQYIGWTPTNREETGVIARLCNQYGIRTTGDWQVWADNL* |
Ga0099828_108105901 | 3300009089 | Vadose Zone Soil | EEGTMSKLQTYYEELAELSEHAPLTLHEVCQYIGWIPTNSEEAGVIARLCNQYGIRTTGDWQVWADNL* |
Ga0099828_112932272 | 3300009089 | Vadose Zone Soil | MSKLQTYYEELAELSEHAPLTLPEVCQYIGWTPTNSEEAGVIARLCNQYGIRTTGDWQVWAENL* |
Ga0099827_117380402 | 3300009090 | Vadose Zone Soil | MSKLQAYYEELAELSEQAPLTLPEVCQYIGWTPTNSEEAGVIARLCHQYGIRTTGDWPAWAENL* |
Ga0105250_102776541 | 3300009092 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTIVRLCTQYGIRTTEDWQVLANKL* |
Ga0111539_105777362 | 3300009094 | Populus Rhizosphere | MRTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTIERLCAQYGIQTTEDWQALANKL* |
Ga0111539_107132001 | 3300009094 | Populus Rhizosphere | AYYEELAELSEQKPLTLHEVCQYVGWTPTTRQELSTLGRLCTQYGIRTTEDWQVLADKL* |
Ga0105245_122085672 | 3300009098 | Miscanthus Rhizosphere | MSILQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIQTTEDWQALANKL* |
Ga0114129_110605972 | 3300009147 | Populus Rhizosphere | HLSPEPMTRYSRSMSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0111538_109105753 | 3300009156 | Populus Rhizosphere | YYEELAELSEQQPLTLHEVCQYVGWTPTTRQELSTLGRLCTQYGIRTTEDWQVLADKL* |
Ga0075423_103869763 | 3300009162 | Populus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIERLCAQYGIQTTEDWQALANKL* |
Ga0105248_128397632 | 3300009177 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRHEVSILGRLCTQYGIRTTEDWHVLATKL* |
Ga0105249_119201101 | 3300009553 | Switchgrass Rhizosphere | ELSEQKPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL* |
Ga0126380_112359532 | 3300010043 | Tropical Forest Soil | MSTLQAYYEELAELSEHEPLTWPEVCQYVGWTPTTREEASNLARLCTQYRIQTTEDWQVWIDKL* |
Ga0126380_120740121 | 3300010043 | Tropical Forest Soil | MADTTKQAYYEELAELSEQSPLTLTEACEFIGWQPTTLAETQAMERLCVQYGI |
Ga0126382_103073722 | 3300010047 | Tropical Forest Soil | MSTRQAYYEELAELSEHEPLTWSEVCQYVGWTPTTREEASMLARLCTQYGIQTTEDWQVWTEKL* |
Ga0126382_105717841 | 3300010047 | Tropical Forest Soil | MNNLQAYYEELAELSEQEPLTLPEVCQYVGWPPTTREEAGVLARLCTQYGIRTTGDWHEWAEKL* |
Ga0126382_112374111 | 3300010047 | Tropical Forest Soil | MRSEAVTRKDPRNLGASIPALLTEGDERMSTLQAYYEELAELSEHEPLTWSEVYQYVGWTPTTREEASMLARLCMQYGIQTTEDWQEWIDKL* |
Ga0126377_133077911 | 3300010362 | Tropical Forest Soil | LGASIPALLTEGDERMSILQAYYEELAELSEHEPLTWPEVCQYVGWTPTTREEASNLARLCTQYRIQTTEDWQVWIDKL* |
Ga0126379_108674791 | 3300010366 | Tropical Forest Soil | LAELSEHEPLTLPEVCQYVGWTPRTRAEADRMARLCTQYGIRTTDDWRVWAETL* |
Ga0105239_110533712 | 3300010375 | Corn Rhizosphere | MSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQALANKL* |
Ga0134127_122338281 | 3300010399 | Terrestrial Soil | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIERLCTQYGIRTTEDWQALANKL* |
Ga0137389_102805862 | 3300012096 | Vadose Zone Soil | MSKLQTYYEELAELSEHAPLTLHEVCQYIGWIPTNSEEAGVIARLCNQYGIRTTGDWQVWAENL* |
Ga0137388_106779311 | 3300012189 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLPEVCQYIGWTPTNSEEAGVIARLCNQYGIRTTGDWQVWAENL* |
Ga0137374_106906981 | 3300012204 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLHEVCQYVGWTPTNREETGIIARLCTQYGIRTTGDWQVWADNL* |
Ga0137362_116088341 | 3300012205 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTRAEASVLARLCTQYGIRTTGD |
Ga0137360_103227532 | 3300012361 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTRAEASVLARLCTQYGIRTTGDWHVWAENL* |
Ga0137361_106998501 | 3300012362 | Vadose Zone Soil | LAELSEQEPLTLPEVCQYGGWTPTTRAEAGVLARLCPQYGIRTTGDWHVWAENL* |
Ga0150984_1204271491 | 3300012469 | Avena Fatua Rhizosphere | MSTLQVYYEELAELSENAALTLPEVCQYVGWTPSTREEAGLMARLCTQYGIRTTEDWLVWAEKL* |
Ga0137373_106234922 | 3300012532 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTVPEVCQYGGWTPTPRAEAGVLVRLCPQYGIRTTGDWQMWAENLEGPGPR* |
Ga0157285_102652012 | 3300012897 | Soil | MTRYSRSMSTLQTYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCAQYGIRTTEDWQVLADTL* |
Ga0137394_101851584 | 3300012922 | Vadose Zone Soil | MSKLQTYYEELAELSEHAPLTLHEVCQYVGWTPTTREETGIIARLCTQYGIRTTGDWQVWADKL* |
Ga0137359_115891291 | 3300012923 | Vadose Zone Soil | MSTLQAYYEELAELSEHEPLTLHEICQYVGWTPTTRAETGVIARLCTQYGIRTTEDWQVWADTL* |
Ga0137404_101399241 | 3300012929 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTRAEAGVLARLCPQYGIRTTGDWHVWAENL* |
Ga0137404_103448252 | 3300012929 | Vadose Zone Soil | MGNLQAYYEELAELSEQEPLTLQEVCQYVGWTPTTNEEASVLARLCTQYGIKTTVDWQLWADNL* |
Ga0137407_114211172 | 3300012930 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLPEVCQYVGWTPTNREETGVIARLCTQYGIRTTGDWQVWADKL* |
Ga0137410_108480872 | 3300012944 | Vadose Zone Soil | MSTLQAYYEELAELSEHEPLTWHEICQYVGWTPSTRDEAGTLARLCTQYGIRTTEDWHVWTAQR* |
Ga0163162_102184542 | 3300013306 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIQTTEDWQVLADTL* |
Ga0137418_106724691 | 3300015241 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYVGWTPTTREEAGVLARFCTQYGIRTTGDWQVWAENLSGPGPR* |
Ga0137403_101929784 | 3300015264 | Vadose Zone Soil | MSTLQAYYEELAELSEQEPLTLPEVCQYGGWTPTTRAEAGVLARLCPQYGIRTTGDWHVWAENL* |
Ga0163161_117427972 | 3300017792 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIQTTEDWQALANKL |
Ga0184638_11712921 | 3300018052 | Groundwater Sediment | MSKLQAYYEELAELSEHAPLTLPEVCQYVGWTSITREEANIIARLCTQYGIRTTEDWHVWAAKL |
Ga0184626_104139621 | 3300018053 | Groundwater Sediment | MSTLQVYYEELAELSEHEPLTLHEVCQYVGWTPITWEEAGLIARLCTQYGIRTTEDWLVWAEKL |
Ga0184623_104974181 | 3300018056 | Groundwater Sediment | MSTLQAYYEELAELSEYKPLTLHEVCQYVGWTPTTREEANLIARLCTQYGIRTTEDWHVWAAKL |
Ga0184637_103785131 | 3300018063 | Groundwater Sediment | MSKLQTYYEELAELSEHAPLTLHEVCQYVGWTPTNSEETGAIARLCNQYGIRTTGDWQVWADNL |
Ga0190275_106825571 | 3300018432 | Soil | MNTLQVYYEELAELSEHEPLTLPEVCQYVGWTPSTREEVGLMARLCTQYGIRTTEDWLVWAEKL |
Ga0190270_102708851 | 3300018469 | Soil | MNTLQVYYEELAELSEHDPLTLPEVCQYVGWTPSTREEVGLMARLCTQYGIRTTEDWLVWAEKL |
Ga0173481_104162352 | 3300019356 | Soil | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIERLCTQYGIQTTEDWQALANKL |
Ga0187894_100531134 | 3300019360 | Microbial Mat On Rocks | MSKLQAYYEELAELSEYEPLTLREVCQYVGWTPTNSEEAGVMARLCTQYGVRTTVDWQGWADHLF |
Ga0187894_102663252 | 3300019360 | Microbial Mat On Rocks | MSKLQAYYEKLAELGEDAPLTLHEVCQYVGWTPTNREETGVIARLCNQYGIRTTGDWQVWADNL |
Ga0207688_106808691 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | LHGHLSTEPWTRYSRSMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCAQYGIRTTEDWQVLADTL |
Ga0207643_104906022 | 3300025908 | Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCAQYGIRTTEDWQVLADTL |
Ga0207662_105364672 | 3300025918 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTMVRLCTQYGIRTTEDWQVLADQL |
Ga0207681_115871781 | 3300025923 | Switchgrass Rhizosphere | SMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIRTTEDWQVLANKL |
Ga0207709_104074994 | 3300025935 | Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIERLCTQYGIQTTEDWQVLADQL |
Ga0207670_108584542 | 3300025936 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQMLANKL |
Ga0207677_106361731 | 3300026023 | Miscanthus Rhizosphere | MTRYSRSMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0207703_120431701 | 3300026035 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTED |
Ga0207708_102357521 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSIIVRLCTQYGIQTTEDWQVLADQL |
Ga0209180_102853202 | 3300027846 | Vadose Zone Soil | MSKLQAYYEELAELSEHAPLTLHEVCQYIGWIPTNSEEAGVIARLCNQYGIRTTGDWQVWADNL |
Ga0209814_102661871 | 3300027873 | Populus Rhizosphere | MTRYSRSMRTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL |
Ga0207428_100949984 | 3300027907 | Populus Rhizosphere | MSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0209382_103487513 | 3300027909 | Populus Rhizosphere | AYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQVLADTL |
Ga0268265_103313833 | 3300028380 | Switchgrass Rhizosphere | MSTLQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTLGRLCTQYGIRTTEDWQV |
Ga0310900_107362161 | 3300031908 | Soil | PWTRYSRSMSTLQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0310885_101752211 | 3300031943 | Soil | LQAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANK |
Ga0310906_112830071 | 3300032013 | Soil | MSTPQAYYEELAELSEQQPLTLHEVCQYVGWTPTTRQEVSTIERLCTQYGIQTTEDWQALANKL |
Ga0310890_106518091 | 3300032075 | Soil | QAYYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0314783_129120_387_566 | 3300034662 | Soil | AYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIRTTEDWQVLANKL |
Ga0314784_133156_3_179 | 3300034663 | Soil | YYEELAELSEQKPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0314786_108519_438_605 | 3300034664 | Soil | ELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0314792_251173_11_205 | 3300034667 | Soil | MSTPQAYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0314795_087056_35_250 | 3300034670 | Soil | MTRYSRSMRTLQAYYEELAELSEQQPLTLHEVCQYVGWTPKTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
Ga0314803_120025_2_181 | 3300034678 | Soil | AYYEELAELSEQKPLTLHEVCQYVGWTPTTRQEVSTIGRLCTQYGIRTTEDWQALANKL |
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