Metagenome Family F097645

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097645
Family Type	Metagenome
Number of Sequences	104
Average Sequence Length	80 residues
Representative Sequence	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.69 %
% of genes near scaffold ends (potentially truncated)	25.00 %
% of genes from short scaffolds (< 2000 bps)	75.00 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.615 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.385 % of family members)
Environment Ontology (ENVO)	Unclassified (37.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.692 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.95% β-sheet: 0.00% Coil/Unstructured: 16.05%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02586	SRAP	12.50
PF00291	PALP	8.65
PF12681	Glyoxalase_2	5.77
PF00440	TetR_N	2.88
PF00583	Acetyltransf_1	1.92
PF11578	DUF3237	1.92
PF00144	Beta-lactamase	1.92
PF12840	HTH_20	1.92
PF13537	GATase_7	1.92
PF00106	adh_short	0.96
PF13561	adh_short_C2	0.96
PF13522	GATase_6	0.96
PF02537	CRCB	0.96
PF02594	DUF167	0.96
PF13428	TPR_14	0.96
PF13451	zf-trcl	0.96
PF14015	DUF4231	0.96
PF01068	DNA_ligase_A_M	0.96
PF00326	Peptidase_S9	0.96
PF00126	HTH_1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	12.50
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.92
COG0239	Fluoride ion exporter CrcB/FEX, affects chromosome condensation	Cell cycle control, cell division, chromosome partitioning [D]	0.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.96
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.62 %
Unclassified	root	N/A	40.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	17.31 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.81 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	16.35 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4.81 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.92 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	16.35 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.92 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.92 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
unclassified Xanthomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae	16.35 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.92 %
Povalibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	16.35 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.92 %
unclassified Mycobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → unclassified Mycobacteriaceae	0.96 %
Povalibacter uvarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.38 %
Xanthomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	16.35 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.92 %
Mycobacteriaceae bacterium 1482268.1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → unclassified Mycobacteriaceae → Mycobacteriaceae bacterium 1482268.1	0.96 %
Povalibacter uvarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	0.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8877977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1135	Open in IMG/M
2228664021\|ICCgaii200_c1107093	All Organisms → cellular organisms → Bacteria → Proteobacteria	3212	Open in IMG/M
2228664021\|ICCgaii200_c1107866	All Organisms → cellular organisms → Bacteria → Proteobacteria	2005	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101612057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1824	Open in IMG/M
3300000559\|F14TC_104819809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	654	Open in IMG/M
3300000881\|JGI10215J12807_1140579	Not Available	710	Open in IMG/M
3300000890\|JGI11643J12802_10508856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	795	Open in IMG/M
3300000956\|JGI10216J12902_115646301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Povalibacter → Povalibacter uvarum	2292	Open in IMG/M
3300003267\|soilL1_10028755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5276	Open in IMG/M
3300003319\|soilL2_10082302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4485	Open in IMG/M
3300003319\|soilL2_10162938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1659	Open in IMG/M
3300004114\|Ga0062593_100034154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	2947	Open in IMG/M
3300004114\|Ga0062593_100834584	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300004153\|Ga0063455_101509761	Not Available	524	Open in IMG/M
3300004156\|Ga0062589_100012152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → unclassified Mycobacteriaceae → Mycobacteriaceae bacterium 1482268.1	3659	Open in IMG/M
3300004463\|Ga0063356_100125068	All Organisms → cellular organisms → Bacteria → Proteobacteria	2866	Open in IMG/M
3300004463\|Ga0063356_101410804	Not Available	1026	Open in IMG/M
3300005093\|Ga0062594_100339981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1171	Open in IMG/M
3300005294\|Ga0065705_10347649	Not Available	961	Open in IMG/M
3300005328\|Ga0070676_10817403	Not Available	689	Open in IMG/M
3300005330\|Ga0070690_100836635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	716	Open in IMG/M
3300005331\|Ga0070670_100066513	All Organisms → cellular organisms → Bacteria	3093	Open in IMG/M
3300005332\|Ga0066388_101089540	Not Available	1351	Open in IMG/M
3300005334\|Ga0068869_100006244	All Organisms → cellular organisms → Bacteria → Proteobacteria	7546	Open in IMG/M
3300005334\|Ga0068869_100176982	All Organisms → cellular organisms → Bacteria → Proteobacteria	1670	Open in IMG/M
3300005336\|Ga0070680_100283861	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300005336\|Ga0070680_100782755	Not Available	822	Open in IMG/M
3300005337\|Ga0070682_100129467	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300005364\|Ga0070673_100004928	All Organisms → cellular organisms → Bacteria → Proteobacteria	8501	Open in IMG/M
3300005366\|Ga0070659_100296186	Not Available	1348	Open in IMG/M
3300005367\|Ga0070667_102264748	Not Available	512	Open in IMG/M
3300005441\|Ga0070700_100390045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1044	Open in IMG/M
3300005444\|Ga0070694_100019864	All Organisms → cellular organisms → Bacteria	4277	Open in IMG/M
3300005471\|Ga0070698_101701963	Not Available	583	Open in IMG/M
3300005547\|Ga0070693_100136811	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300005718\|Ga0068866_10026792	All Organisms → cellular organisms → Bacteria	2727	Open in IMG/M
3300005844\|Ga0068862_102632795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	515	Open in IMG/M
3300005981\|Ga0081538_10221333	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300005983\|Ga0081540_1067413	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300006196\|Ga0075422_10020750	All Organisms → cellular organisms → Bacteria → Proteobacteria	2232	Open in IMG/M
3300006844\|Ga0075428_100148399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2548	Open in IMG/M
3300006844\|Ga0075428_100229366	All Organisms → cellular organisms → Bacteria → Proteobacteria	2004	Open in IMG/M
3300006846\|Ga0075430_100085395	All Organisms → cellular organisms → Bacteria → Proteobacteria	2643	Open in IMG/M
3300006852\|Ga0075433_10772869	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300006904\|Ga0075424_100734584	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300006914\|Ga0075436_100968754	Not Available	638	Open in IMG/M
3300006969\|Ga0075419_10237544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1215	Open in IMG/M
3300006969\|Ga0075419_10351873	Not Available	1002	Open in IMG/M
3300009094\|Ga0111539_11800415	Not Available	710	Open in IMG/M
3300009098\|Ga0105245_12608704	Not Available	558	Open in IMG/M
3300009100\|Ga0075418_12659847	Not Available	546	Open in IMG/M
3300009147\|Ga0114129_11478259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	836	Open in IMG/M
3300009553\|Ga0105249_10113029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	2569	Open in IMG/M
3300010042\|Ga0126314_10765594	Not Available	709	Open in IMG/M
3300010397\|Ga0134124_11090435	Not Available	814	Open in IMG/M
3300010401\|Ga0134121_10216682	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300012898\|Ga0157293_10174019	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300012901\|Ga0157288_10069397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	879	Open in IMG/M
3300012910\|Ga0157308_10104374	Not Available	841	Open in IMG/M
3300014745\|Ga0157377_10001488	All Organisms → cellular organisms → Bacteria → Proteobacteria	10142	Open in IMG/M
3300015200\|Ga0173480_10229682	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300015371\|Ga0132258_12740564	Not Available	1229	Open in IMG/M
3300015372\|Ga0132256_100324594	Not Available	1629	Open in IMG/M
3300015374\|Ga0132255_102767039	Not Available	750	Open in IMG/M
3300017792\|Ga0163161_10068398	All Organisms → cellular organisms → Bacteria → Proteobacteria	2595	Open in IMG/M
3300018422\|Ga0190265_10714805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1123	Open in IMG/M
3300018422\|Ga0190265_10842171	Not Available	1040	Open in IMG/M
3300018476\|Ga0190274_12172419	Not Available	652	Open in IMG/M
3300019356\|Ga0173481_10583775	Not Available	585	Open in IMG/M
3300019356\|Ga0173481_10587470	Not Available	583	Open in IMG/M
3300019361\|Ga0173482_10021809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	1828	Open in IMG/M
3300022889\|Ga0247785_1055064	Not Available	509	Open in IMG/M
3300024055\|Ga0247794_10145046	Not Available	738	Open in IMG/M
3300025899\|Ga0207642_11038159	Not Available	529	Open in IMG/M
3300025907\|Ga0207645_10201970	Not Available	1308	Open in IMG/M
3300025907\|Ga0207645_10612527	Not Available	739	Open in IMG/M
3300025908\|Ga0207643_10053788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	2288	Open in IMG/M
3300025917\|Ga0207660_11714288	Not Available	505	Open in IMG/M
3300025921\|Ga0207652_11003675	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300025922\|Ga0207646_10746591	Not Available	873	Open in IMG/M
3300025930\|Ga0207701_10976478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	706	Open in IMG/M
3300025945\|Ga0207679_11007018	Not Available	764	Open in IMG/M
3300025981\|Ga0207640_10478524	Not Available	1032	Open in IMG/M
3300026023\|Ga0207677_10028406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3536	Open in IMG/M
3300026089\|Ga0207648_10057249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3401	Open in IMG/M
3300027880\|Ga0209481_10033102	All Organisms → cellular organisms → Bacteria → Proteobacteria	2346	Open in IMG/M
3300027907\|Ga0207428_10033336	All Organisms → cellular organisms → Bacteria	4231	Open in IMG/M
3300027909\|Ga0209382_10010145	All Organisms → cellular organisms → Bacteria	11767	Open in IMG/M
3300027909\|Ga0209382_10374843	All Organisms → cellular organisms → Bacteria	1589	Open in IMG/M
3300031184\|Ga0307499_10100255	Not Available	792	Open in IMG/M
3300031538\|Ga0310888_10499697	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300031548\|Ga0307408_100155891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1808	Open in IMG/M
3300031548\|Ga0307408_100786050	Not Available	863	Open in IMG/M
3300031731\|Ga0307405_11897801	Not Available	531	Open in IMG/M
3300031847\|Ga0310907_10209182	Not Available	937	Open in IMG/M
3300031847\|Ga0310907_10415470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	704	Open in IMG/M
3300031903\|Ga0307407_10912600	Not Available	674	Open in IMG/M
3300031908\|Ga0310900_10182597	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300031911\|Ga0307412_11207497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → unclassified Xanthomonadaceae → Xanthomonadaceae bacterium	677	Open in IMG/M
3300032002\|Ga0307416_100505955	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300032002\|Ga0307416_103145282	Not Available	552	Open in IMG/M
3300032075\|Ga0310890_10526309	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300033412\|Ga0310810_10412700	Not Available	1387	Open in IMG/M
3300034817\|Ga0373948_0141929	Not Available	595	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.00%
Host-Associated	Host-Associated	50.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	50.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.42%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.00%
Loam	Environmental → Terrestrial → Soil → Loam	13.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.38%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.58%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.69%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.85%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01824200	2088090015	Soil	MFIEPRQLIAETIDQLETISAYFADEIDERIHAPDKLPVEALAAKEALQTIRILIPKLRTAQGNLAASSAQLQFRECLHCE
ICCgaii200_11070935	2228664021	Soil	MFIEPRQLIAETIDKLETVATFFADXVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
ICCgaii200_11078662	2228664021	Soil	MFIEPRQLIADTIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPRLRTAQGNLSASSAQLQFRECLNCD
INPhiseqgaiiFebDRAFT_1016120574	3300000364	Soil	MFIEPRQLIADTIDQLETISAYFADEVDELVRAPDKLPLEALAAKEALQTIKVLIPKLRTAQGSLAASSAQLQFRECTHCE*
F14TC_1048198092	3300000559	Soil	MFVEPPQFIADTIDKLETVAAYFAAEVEERRSDEQQLSVEALAAKEAVQTIRILIPKLRTAQASLVSRAQMQFRECLNCE*
JGI10215J12807_11405792	3300000881	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFH
JGI11643J12802_105088561	3300000890	Soil	MFIEPRQLIAETIDQLETISAYFADEIDERIRAPDKLPVEALAAKEALQTIRILIPKLRTAQGNLAASSAQLQFRECLHCE*
JGI10216J12902_1156463012	3300000956	Soil	MFIEPRQLIGETIDKLETISAYFADEIDERVRAADKLPVEALAAKEALQTIKVLIPKLRTAQGNLATSSAQLQFRECLNCE*
soilL1_100287553	3300003267	Sugarcane Root And Bulk Soil	MFIEPRQLIAETIDKLETVATYFADEVDERVLAADKLSVEALAAKEALQTIRILIPKLRTAQGSLAIGSAQLQFRECLHCE*
soilL2_100823027	3300003319	Sugarcane Root And Bulk Soil	MFIEPRHLIAETIDKLETVATYFADEVDERVLAADKLSVEALAAKEALQTIRILIPKLRTAQGSLAIGSAQLQFRECLHCE*
soilL2_101629384	3300003319	Sugarcane Root And Bulk Soil	MFIEPRQLIAETIDQLETISAYFADEVDERIHAPDKLPVEALAAREALQTIRILIPKLRTAQGNLSASSAQLQFHECLHCE*
Ga0062593_1000341541	3300004114	Soil	IDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0062593_1008345841	3300004114	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0063455_1015097612	3300004153	Soil	MFIEPRQLIAETIDQLETVATFFADEVDERVRAPDKLSLEALAAKEALQTIKILIPKLRTAQGSLAVGSTQLQFRECLHCE*
Ga0062589_1000121522	3300004156	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0063356_1001250683	3300004463	Arabidopsis Thaliana Rhizosphere	MFIEPRQLIADTIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPRLRTAQGNLSASSAQLQFRECLNCD*
Ga0063356_1014108042	3300004463	Arabidopsis Thaliana Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEVDERVRAPDQLPVEALAAKEALQTIKILIPKLRTAQGNLAASSAQLQFHECLHCE*
Ga0062594_1003399813	3300005093	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEASAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0065705_103476492	3300005294	Switchgrass Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECLHCE*
Ga0070676_108174032	3300005328	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0070690_1008366352	3300005330	Switchgrass Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEVDERVRAPDQLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0070670_1000665132	3300005331	Switchgrass Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKIVIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0066388_1010895401	3300005332	Tropical Forest Soil	MFIEPRQLIAETIDQLETISAFFADEIDERVRAPDKLPVEALAAKEALQTIRILIPKLRTAQGGLATNSAQLQFRECLHCE*
Ga0068869_10000624412	3300005334	Miscanthus Rhizosphere	IAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0068869_1001769823	3300005334	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAREALQTIRILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0070680_1002838612	3300005336	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLPVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0070680_1007827552	3300005336	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGNLAASIAQLQFHECLHCE*
Ga0070682_1001294674	3300005337	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLPVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0070673_1000049284	3300005364	Switchgrass Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0070659_1002961862	3300005366	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0070667_1022647481	3300005367	Switchgrass Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVREPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0070700_1003900451	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0070694_1000198646	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFIEPCQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0070698_1017019632	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MFIEPRQLIADTIDQLETISAYFADEVDERVRAPDKLPLEALAAKEALQTIKILIPKLRTAQGSLAADSAQLQFRECMNCE*
Ga0070693_1001368114	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIRILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0068866_100267924	3300005718	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTEQGSLDVASAQLQFRECMHCE*
Ga0068862_1026327952	3300005844	Switchgrass Rhizosphere	PRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0081538_102213331	3300005981	Tabebuia Heterophylla Rhizosphere	MFTEPRQLIEETIDKLETVSAYFADEIDDHFRTHTKLPVGALAAKEALQTIKILIPKLRTAQGGLAAGSPQLQFRE
Ga0081540_10674134	3300005983	Tabebuia Heterophylla Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEIDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGNLAASSAQLQFHECLHCE*
Ga0075422_100207504	3300006196	Populus Rhizosphere	MFIEPRQLISETIDQLETISAYFADEVDELVRAADKLPVEALAAKEALQTIKILIPKLRTAQGNLTANEAQLQFRECLNCE*
Ga0075428_1001483995	3300006844	Populus Rhizosphere	MFIEPRQLIAETIDKLETVATYFADEVDERVLAPDKLSVEALAAKEALRTIKILIPKLRTAQGSLAASSAQLQFRECIHCE*
Ga0075428_1002293661	3300006844	Populus Rhizosphere	MFIEPRQLIADTIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPKLRTAQGNLTASSAQLQFRECLHCE*
Ga0075430_1000853951	3300006846	Populus Rhizosphere	MFIEPRQLIAETIDKLETVATYFADEVDERVLAPDKLSLEALAAKEALQTIRILIPKLRTAQGSLAAASAQLQFRECIHCE*
Ga0075433_107728691	3300006852	Populus Rhizosphere	MFIEPRQLISETIDQLETISAYFADEVDELVRAADKLPVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0075424_1007345844	3300006904	Populus Rhizosphere	RMFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0075436_1009687541	3300006914	Populus Rhizosphere	AETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0075419_102375441	3300006969	Populus Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0075419_103518732	3300006969	Populus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIRILIPKLRTAQGSLAAASAQLQFRECIHCE*
Ga0111539_118004153	3300009094	Populus Rhizosphere	RRMFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECLHCE*
Ga0105245_126087042	3300009098	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRALDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQ
Ga0075418_126598471	3300009100	Populus Rhizosphere	MFTEPRQLIGETIDKLETVSACFADEIHDQVRAAGQLPVGALAAKEAMQTIKILIPKLRTAQSSLAAGSAQLQFRECLHCE*
Ga0114129_114782591	3300009147	Populus Rhizosphere	GNGGSRMFIEPRQLIAETIDKLETVATYFADEVDERVLAPDKLSVEALAAKEALQSIRVLIPKLRTAQGSLAAASAQLQFRECIHCE*
Ga0105249_101130294	3300009553	Switchgrass Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0126314_107655942	3300010042	Serpentine Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLPVEALAAKEALQTIKILIPKLRTAQGGLAAASAQLQFRECLHCE*
Ga0134124_110904352	3300010397	Terrestrial Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVREPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE*
Ga0134121_102166824	3300010401	Terrestrial Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIRILIPRLRTAQGSLAVASAQLQFRECMHCE*
Ga0157293_101740191	3300012898	Soil	KLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0157288_100693971	3300012901	Soil	MFIEPRQLIADTIDQLETISAYFADEVDERVRAPDKLPVEALAAKEALQTIRILIPKLRTAQGNLAASSAQLQFHECLHCE*
Ga0157308_101043742	3300012910	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECM
Ga0157377_1000148813	3300014745	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALLTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0173480_102296823	3300015200	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE*
Ga0132258_127405642	3300015371	Arabidopsis Rhizosphere	MFIEPRQLIAETIDKLETVAIFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0132256_1003245942	3300015372	Arabidopsis Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVHAPVREPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE*
Ga0132255_1027670393	3300015374	Arabidopsis Rhizosphere	QLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFHECLHCE*
Ga0163161_100683981	3300017792	Switchgrass Rhizosphere	AETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0190265_107148053	3300018422	Soil	MFLEPHQLIVDTIDKLETVAAYFADEVQERGSDKQLSIETLAAKEALQTIRILIPKLRTAQASQVNKAQMQFRECLTCE
Ga0190265_108421711	3300018422	Soil	MFTEPRQLIGETIDKLETVSAYFAGEIEEQVCTNGQLPVEALAAKEALQTIKILIPKLRTAQGALDVGSAQLQFNECLHCE
Ga0190274_121724191	3300018476	Soil	MFIEPRQLIAETIDQLETISAYFADEVDERVRAPDKLTLEALAAKEALQTIKILIPKLRTAQGSLAADSAQLQFRECMNCE
Ga0173481_105837752	3300019356	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSMAASSAQLQFRECMHCE
Ga0173481_105874702	3300019356	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
Ga0173482_100218092	3300019361	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVREPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE
Ga0247785_10550641	3300022889	Soil	AETIDKLETVATFFADEVDERVRAPEKLPVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0247794_101450462	3300024055	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0207642_110381591	3300025899	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRALDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
Ga0207645_102019701	3300025907	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASA
Ga0207645_106125272	3300025907	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFRECLHCE
Ga0207643_100537883	3300025908	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
Ga0207660_117142881	3300025917	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLPVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0207652_110036751	3300025921	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQSIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0207646_107465912	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAREALQTIRILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0207701_109764781	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	RQLIAETIDKLETVATFFADEVDERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
Ga0207679_110070182	3300025945	Corn Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEVDERVRAPDQLPVEALAAKEALQTIKILIPKLRTAQGNLAASSAQLQFHECLHCE
Ga0207640_104785243	3300025981	Corn Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVERVRAPEKLSLEALAAKEALQTIKILIPKLRTAQGSLAAASAQLQFHECLHCE
Ga0207677_100284063	3300026023	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIRILIPRLRTAQGSLAVASAQLQFRECMHCE
Ga0207648_100572495	3300026089	Miscanthus Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSVA
Ga0209481_100331022	3300027880	Populus Rhizosphere	MFIEPRQLISETIDQLETISAYFADEVDELVRAADKLPVEALAAKEALQTIKILIPKLRTAQGNLTANEAQLQFRECLNCE
Ga0207428_100333364	3300027907	Populus Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEVDERIHAPDKLPVEALAAKEALQTIKILIPKLRTAQGNLTASSAQLQFRECLHCE
Ga0209382_100101456	3300027909	Populus Rhizosphere	MFIEPRQLIAETIDKLETVATYFADEVDERVLAPDKLSVEALAAKEALRTIKILIPKLRTAQGSLAASSAQLQFRECIHCE
Ga0209382_103748432	3300027909	Populus Rhizosphere	MFIEPRQLIAETIDKLETVATYFADEVDERVLAPDKLSVEALAAKEALQSIRVLIPKLRTAQGSLAAASAQLQFRECIHCE
Ga0307499_101002553	3300031184	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPDKLPVEALAAKEALQTIKILIPKLRTAQGSLAAASTQLQFHECLHCE
Ga0310888_104996971	3300031538	Soil	TPEDLRMFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0307408_1001558913	3300031548	Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLSVEALAAKEALQAIKTLIPKLRTAQGSLAIASAQLQFRECLHCE
Ga0307408_1007860502	3300031548	Rhizosphere	MFIEPRQLIAETIDQLETISAYFADEIDERVRAPDKLPVEALAAKEALQTIKILIPRLRTAQGNLSASSAQLQFRECLNCD
Ga0307405_118978012	3300031731	Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLSVEALAAKEALQAIKTLIPKLRTAQGSLAIASAQLQFRE
Ga0310907_102091822	3300031847	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECLHCE
Ga0310907_104154703	3300031847	Soil	PRQLIAETIDQLETISAYFADEVDERVRAPDQLPVEALAAKEALQTIKILIPKLRTAQGNLAASSAQLQFHECLHCE
Ga0307407_109126002	3300031903	Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLSVEALAAKEALRAIKTLIPKLRTAQGSLAIASAQLQFRECLHCE
Ga0310900_101825972	3300031908	Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIRILIPKLRTAQGSLAVASAQLQFRECLHCE
Ga0307412_112074971	3300031911	Rhizosphere	MFIEPRQLIADTIDQLETISAYFADEVDERVRAPDKLPLEALAAKEALQTIKILIPKLRTAQGSLAADSAQLQFRECLNCE
Ga0307416_1005059552	3300032002	Rhizosphere	MFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLSVEALAATEALQAIKTLIPKLRTAQGSLAIASAQLQFRECLHCE
Ga0307416_1031452821	3300032002	Rhizosphere	MFTEPRQLIVETIDKLETVSAYFAGEIEQQVRTTGQLAVEALAAKEALQTIRILIPKLRTAQGSLAAGSAQLQFRECLHCD
Ga0310890_105263091	3300032075	Soil	TELYIKPVTPEDPRMFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAVASAQLQFRECMHCE
Ga0310810_104127003	3300033412	Soil	SLAVTVYNTSLPEESRMFIEPRQLIAETIDKLETVATFFADEVDERVHAPDKLSVEALAAKEALQTIRILIPKLRTAHGSLAAASAQLQFRECLHCE
Ga0373948_0141929_131_376	3300034817	Rhizosphere Soil	MFIEPRQLIAETIDKLETVATFFADEVDERVRAPEKLSVEALAAKEALQTIKILIPKLRTAQGSLAASSAQLQFRECLHCE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F097645

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences