NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F097664

Metagenome Family F097664

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F097664
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 52 residues
Representative Sequence MGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRK
Number of Associated Samples 81
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 83.65 %
% of genes near scaffold ends (potentially truncated) 23.08 %
% of genes from short scaffolds (< 2000 bps) 60.58 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (63.462 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(18.269 % of family members)
Environment Ontology (ENVO) Unclassified
(65.385 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(75.962 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF11753DUF3310 40.38
PF05766NinG 14.42
PF13730HTH_36 2.88
PF08291Peptidase_M15_3 1.92
PF04404ERF 0.96


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A63.46 %
All OrganismsrootAll Organisms36.54 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10007487Not Available7387Open in IMG/M
3300000101|DelMOSum2010_c10012480Not Available5359Open in IMG/M
3300000115|DelMOSum2011_c10004293All Organisms → cellular organisms → Bacteria8505Open in IMG/M
3300000115|DelMOSum2011_c10012568Not Available4373Open in IMG/M
3300000116|DelMOSpr2010_c10010439Not Available4835Open in IMG/M
3300000116|DelMOSpr2010_c10011243All Organisms → Viruses → Predicted Viral4628Open in IMG/M
3300000116|DelMOSpr2010_c10017221All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.3585Open in IMG/M
3300000116|DelMOSpr2010_c10036780All Organisms → Viruses → Predicted Viral2239Open in IMG/M
3300000117|DelMOWin2010_c10146702All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.785Open in IMG/M
3300001348|JGI20154J14316_10007787All Organisms → cellular organisms → Bacteria7438Open in IMG/M
3300001352|JGI20157J14317_10004738All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium10386Open in IMG/M
3300003580|JGI26260J51721_1018526All Organisms → cellular organisms → Bacteria1499Open in IMG/M
3300004448|Ga0065861_1190667Not Available665Open in IMG/M
3300005609|Ga0070724_10450261Not Available573Open in IMG/M
3300005612|Ga0070723_10026736All Organisms → Viruses → Predicted Viral2134Open in IMG/M
3300005920|Ga0070725_10473452Not Available562Open in IMG/M
3300005941|Ga0070743_10203695Not Available649Open in IMG/M
3300006029|Ga0075466_1001569All Organisms → cellular organisms → Bacteria8508Open in IMG/M
3300006029|Ga0075466_1015966Not Available2490Open in IMG/M
3300006029|Ga0075466_1050507Not Available1227Open in IMG/M
3300006193|Ga0075445_10046998All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971728Open in IMG/M
3300006467|Ga0099972_10071881Not Available907Open in IMG/M
3300006484|Ga0070744_10011263All Organisms → cellular organisms → Bacteria2655Open in IMG/M
3300006752|Ga0098048_1049085Not Available1330Open in IMG/M
3300006793|Ga0098055_1219470Not Available719Open in IMG/M
3300006920|Ga0070748_1163156Not Available825Open in IMG/M
3300006924|Ga0098051_1127332Not Available677Open in IMG/M
3300006925|Ga0098050_1008425All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED973077Open in IMG/M
3300006947|Ga0075444_10003992Not Available8694Open in IMG/M
3300007229|Ga0075468_10112262Not Available853Open in IMG/M
3300007276|Ga0070747_1012399Not Available3605Open in IMG/M
3300007276|Ga0070747_1028947Not Available2211Open in IMG/M
3300007276|Ga0070747_1067418Not Available1350Open in IMG/M
3300007540|Ga0099847_1000935All Organisms → cellular organisms → Bacteria10043Open in IMG/M
3300009071|Ga0115566_10776611Not Available528Open in IMG/M
3300009079|Ga0102814_10500967Not Available662Open in IMG/M
3300009086|Ga0102812_10812825Not Available518Open in IMG/M
3300009135|Ga0118736_10361508Not Available502Open in IMG/M
3300009172|Ga0114995_10687556All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.559Open in IMG/M
3300009434|Ga0115562_1089778Not Available1240Open in IMG/M
3300009436|Ga0115008_10029411Not Available4393Open in IMG/M
3300009436|Ga0115008_10087733Not Available2329Open in IMG/M
3300009441|Ga0115007_10081110All Organisms → Viruses → Predicted Viral2050Open in IMG/M
3300009441|Ga0115007_10786098Not Available643Open in IMG/M
3300010309|Ga0102890_1088937All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli629Open in IMG/M
3300010392|Ga0118731_104769410Not Available6748Open in IMG/M
3300010883|Ga0133547_10264511Not Available3599Open in IMG/M
3300011118|Ga0114922_10375930All Organisms → Viruses → Predicted Viral1180Open in IMG/M
3300011118|Ga0114922_10842551Not Available748Open in IMG/M
3300011126|Ga0151654_1018009All Organisms → Viruses → environmental samples → uncultured virus856Open in IMG/M
3300013010|Ga0129327_10013552Not Available4413Open in IMG/M
3300017710|Ga0181403_1021217All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971379Open in IMG/M
3300017719|Ga0181390_1000528All Organisms → cellular organisms → Bacteria17274Open in IMG/M
3300017724|Ga0181388_1067222Not Available857Open in IMG/M
3300018417|Ga0181558_10653247Not Available538Open in IMG/M
3300018420|Ga0181563_10119386All Organisms → Viruses → Predicted Viral1698Open in IMG/M
3300018420|Ga0181563_10339348Not Available869Open in IMG/M
3300020169|Ga0206127_1100144All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1230Open in IMG/M
3300021373|Ga0213865_10244426Not Available863Open in IMG/M
3300022053|Ga0212030_1001375All Organisms → Viruses → Predicted Viral2200Open in IMG/M
3300022061|Ga0212023_1006559All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli1417Open in IMG/M
3300022068|Ga0212021_1045701All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300022072|Ga0196889_1017202Not Available1528Open in IMG/M
3300022164|Ga0212022_1069294Not Available542Open in IMG/M
3300022169|Ga0196903_1006273All Organisms → Viruses → Predicted Viral1539Open in IMG/M
3300022178|Ga0196887_1106589Not Available619Open in IMG/M
(restricted) 3300022913|Ga0233404_10058537Not Available888Open in IMG/M
(restricted) 3300023089|Ga0233408_10081851Not Available648Open in IMG/M
(restricted) 3300023112|Ga0233411_10065176Not Available1144Open in IMG/M
(restricted) 3300023210|Ga0233412_10004287All Organisms → cellular organisms → Bacteria6364Open in IMG/M
(restricted) 3300023276|Ga0233410_10110511Not Available856Open in IMG/M
(restricted) 3300024062|Ga0255039_10184318Not Available867Open in IMG/M
(restricted) 3300024062|Ga0255039_10237661Not Available768Open in IMG/M
(restricted) 3300024338|Ga0255043_10058871All Organisms → Viruses → Predicted Viral1195Open in IMG/M
3300024343|Ga0244777_10044784Not Available2826Open in IMG/M
3300024346|Ga0244775_10190211All Organisms → cellular organisms → Bacteria1724Open in IMG/M
3300025070|Ga0208667_1074404Not Available507Open in IMG/M
3300025085|Ga0208792_1029728Not Available1090Open in IMG/M
3300025543|Ga0208303_1003842All Organisms → cellular organisms → Bacteria5369Open in IMG/M
3300025543|Ga0208303_1046203Not Available1078Open in IMG/M
3300025620|Ga0209405_1000385All Organisms → cellular organisms → Bacteria → Proteobacteria37282Open in IMG/M
3300025620|Ga0209405_1057611Not Available1283Open in IMG/M
3300025645|Ga0208643_1007780Not Available4352Open in IMG/M
3300025874|Ga0209533_1107297Not Available1359Open in IMG/M
3300025874|Ga0209533_1198259Not Available849Open in IMG/M
3300027672|Ga0209383_1056042All Organisms → Viruses → Predicted Viral1453Open in IMG/M
3300027672|Ga0209383_1226180Not Available528Open in IMG/M
3300027771|Ga0209279_10003564Not Available6893Open in IMG/M
3300027771|Ga0209279_10010597Not Available3190Open in IMG/M
3300027771|Ga0209279_10059213Not Available1085Open in IMG/M
3300027810|Ga0209302_10163794Not Available1081Open in IMG/M
3300027833|Ga0209092_10001181All Organisms → cellular organisms → Bacteria → Proteobacteria26116Open in IMG/M
3300027833|Ga0209092_10011694All Organisms → cellular organisms → Bacteria6351Open in IMG/M
3300027833|Ga0209092_10021471Not Available4334Open in IMG/M
(restricted) 3300027837|Ga0255041_10194362Not Available712Open in IMG/M
(restricted) 3300027861|Ga0233415_10512188Not Available581Open in IMG/M
(restricted) 3300027996|Ga0233413_10432982Not Available578Open in IMG/M
3300028284|Ga0257120_1002103All Organisms → cellular organisms → Bacteria12354Open in IMG/M
3300031519|Ga0307488_10034265Not Available4029Open in IMG/M
3300031519|Ga0307488_10158779Not Available1575Open in IMG/M
3300032254|Ga0316208_1114999All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp.647Open in IMG/M
3300032274|Ga0316203_1026080All Organisms → Viruses → Predicted Viral1712Open in IMG/M
3300032277|Ga0316202_10017728Not Available3520Open in IMG/M
3300033742|Ga0314858_006995Not Available2135Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous18.27%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine15.38%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine8.65%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater6.73%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine6.73%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater6.73%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine3.85%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.85%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.85%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.88%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat2.88%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.88%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.88%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.92%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.92%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.92%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine0.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.96%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.96%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.96%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.96%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300003580Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005609Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005920Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2EnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009135Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsfEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009441Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M MetagenomeEnvironmentalOpen in IMG/M
3300010309Estuarine microbial communities from the Columbia River estuary - metaG 1552A-3EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011126Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300018417Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020169Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300022913 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_2_MGEnvironmentalOpen in IMG/M
3300023089 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_11_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024338 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_9EnvironmentalOpen in IMG/M
3300024343Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fractionEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027771Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027810Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027837 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_3EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028284Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032254Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month chalcopyriteEnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M
3300033742Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawaterEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1000748713300000101MarineGKGSKPRPIEIGREEFSKKFDGIDWSNTKDGSEKKASKKNENKILPRGRK*
DelMOSum2010_1001248043300000101MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS*
DelMOSum2011_10004293123300000115MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGCKG*
DelMOSum2011_1001256813300000115MarinePIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNKNKILPRGRKS*
DelMOSpr2010_1001043943300000116MarinePRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNKNKILPRGRKS*
DelMOSpr2010_1001124343300000116MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKK*
DelMOSpr2010_1001722133300000116MarineMGKGSKPRPIEIGRKEFEKKFDAIDWSNTKEATSPPVKKNKNSILPRKKP*
DelMOSpr2010_1003678083300000116MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGC
DelMOWin2010_1014670233300000117MarineMGKGSKPRPIEIGRKEFEKKFDAIDWSNTKEATSPPVKKNKNSILPRKK*
JGI20154J14316_10007787193300001348Pelagic MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKS*
JGI20157J14317_1000473833300001352Pelagic MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE*
JGI26260J51721_101852623300003580MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRK*
Ga0065861_119066733300004448MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKG*
Ga0070724_1045026123300005609Marine SedimentKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE*
Ga0070723_1002673663300005612Marine SedimentMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKTKE*
Ga0070725_1047345213300005920Marine SedimentMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSLEKKKASKKNENKILPRGRKF*
Ga0070743_1020369523300005941EstuarineMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKEATSPPVKKNKNSILPRKK*
Ga0075466_100156923300006029AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKESSLEKKKASKKNENKILPRGRKS*
Ga0075466_101596623300006029AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGLEKKASKKNENKILPRGRKTKE*
Ga0075466_105050723300006029AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGCKS*
Ga0075445_1004699823300006193MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRGRKG*
Ga0099972_1007188123300006467MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKG*
Ga0070744_1001126323300006484EstuarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSIEKKKASKKNENKILPRGRKS*
Ga0098048_104908523300006752MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKGATSPPVKKNKNSILPRKKS*
Ga0098055_121947023300006793MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEASVEKKKTPKKNQNKILPRGFKG*
Ga0070748_116315623300006920AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKECSEKKASKKNENKILPRGCKG*
Ga0098051_112733223300006924MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKDATSPPVKKNKNSILPRKKS*
Ga0098050_100842523300006925MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKKS*
Ga0075444_1000399293300006947MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRGRK*
Ga0075468_1011226223300007229AqueousAVMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS*
Ga0070747_101239933300007276AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS*
Ga0070747_102894723300007276AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKECSEKKASKKNENKILPRGRKTKK*
Ga0070747_106741813300007276AqueousEAVMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS*
Ga0099847_100093563300007540AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRRS*
Ga0115566_1077661123300009071Pelagic MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE*
Ga0102814_1050096723300009079EstuarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKTKE*
Ga0102812_1081282513300009086EstuarineMGKGSKPRSIEIGREEFSNKFDGIDWSNTKEVSEKKASKKNENK
Ga0118736_1036150823300009135Marine SedimentMGKGSKPRPIEIGRKEFEKKFDAIDWSNTKEATSPPVKKNKNSILPRKKS*
Ga0114995_1068755613300009172MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSEKKASKKNENKILPRGRKG*
Ga0115562_108977813300009434Pelagic MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEASLEKKKASKKNENKILPRGRKTKD*
Ga0115008_1002941133300009436MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKSKD*
Ga0115008_1008773313300009436MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKG*
Ga0115007_1008111063300009441MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKESSEKKASKKNENKILPRGRKS*
Ga0115007_1078609823300009441MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEATSPPVKKNKNSILPRKKR*
Ga0102890_108893723300010309EstuarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKDGSEKKASKKNENKILPRGRK*
Ga0118731_10476941053300010392MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKG*
Ga0133547_1026451133300010883MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKESSEKKASKKNENKILPRGRKG*
Ga0114922_1037593053300011118Deep SubsurfaceMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKDATSPPVKKNKNSILPRSKAKE*
Ga0114922_1084255123300011118Deep SubsurfaceMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKS*
Ga0151654_101800923300011126MarineMGKGSKPRPIEIGREGFSKKFDGIDWSNTKEGSVEKKKASKKNENKILPRGRKS*
Ga0129327_1001355233300013010Freshwater To Marine Saline GradientMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNKNKILPRGRKS*
Ga0181403_102121723300017710SeawaterMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKKG
Ga0181390_1000528103300017719SeawaterMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKDASAEKKKAPKKNQNKILPRGFKG
Ga0181388_106722223300017724SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNSKEGSIEKKKASKKNENKILPRGRKS
Ga0181558_1065324733300018417Salt MarshMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSIL
Ga0181563_1011938613300018420Salt MarshMGKGSKPRPIEIGRKEFDKKFDAIDWSNTKEATSPPVKRNKNTILPRKKG
Ga0181563_1033934823300018420Salt MarshMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPRVKKNKNSILPRKK
Ga0206127_110014423300020169SeawaterMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRK
Ga0213865_1024442643300021373SeawaterMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKRNKNTILPRKKG
Ga0212030_100137523300022053AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRRS
Ga0212023_100655923300022061AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKESSLEKKKASKKNENKILPRGRKS
Ga0212021_104570143300022068AqueousMGKGSKPRPIEIGRKEFEKKFDAIDWSNTKEATSPPVKKNKNSILPRKK
Ga0196889_101720223300022072AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGLEKKASKKNENKILPRGRKTKE
Ga0212022_106929423300022164AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS
Ga0196903_100627323300022169AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGCKS
Ga0196887_110658923300022178AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNKNKILPRGRKS
(restricted) Ga0233404_1005853723300022913SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSIEKKKASKKNENKILPRGRKS
(restricted) Ga0233408_1008185123300023089SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILP
(restricted) Ga0233411_1006517623300023112SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRK
(restricted) Ga0233412_1000428763300023210SeawaterMGKGSKPRPIEIGREEFKKKFDKIDWSNTKDATSPPVKKNKNSILPRKK
(restricted) Ga0233410_1011051123300023276SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKSKD
(restricted) Ga0255039_1018431823300024062SeawaterKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS
(restricted) Ga0255039_1023766113300024062SeawaterMGKGSKPRPIEIGRKEFEKKFDAIDWSNTKEASVEKKKAPKKNQNKILPRGFKG
(restricted) Ga0255043_1005887143300024338SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSIEKKKASKKNENKILPRGRKTK
Ga0244777_1004478433300024343EstuarineMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKEATSPPVKKNKNSILPRKKS
Ga0244775_1019021143300024346EstuarineMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKEATSPPVKKNKNSILPRKK
Ga0208667_107440423300025070MarineMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKKS
Ga0208792_102972823300025085MarineGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKKS
Ga0208303_100384223300025543AqueousMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE
Ga0208303_104620323300025543AqueousRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGCKS
Ga0209405_1000385573300025620Pelagic MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKTKE
Ga0209405_105761113300025620Pelagic MarineWRLVIMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS
Ga0208643_100778043300025645AqueousMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGCKG
Ga0209533_110729723300025874Pelagic MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKS
Ga0209533_119825913300025874Pelagic MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSLEKKKASKKNENKILPRGRKG
Ga0209383_105604213300027672MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRGRK
Ga0209383_122618013300027672MarineMGKGSKPRPIEIGKKEFDKKFDRIDWSNTKEVSLEKKKASKKN
Ga0209279_1000356413300027771MarinePIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRGRK
Ga0209279_10010597103300027771MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRG
Ga0209279_1005921313300027771MarinePIEIGREEFSKKFDGIDWSNTKESSKKKASKKNENKILPRGRKG
Ga0209302_1016379433300027810MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKESSEKKASKKNENKILPRGRKS
Ga0209092_10001181203300027833MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEASLEKKKASKKNENKILPRGRKG
Ga0209092_1001169473300027833MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKS
Ga0209092_1002147123300027833MarineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKSKD
(restricted) Ga0255041_1019436233300027837SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSIEKKKASKKNENKILPRGRKTKE
(restricted) Ga0233415_1051218813300027861SeawaterQSKLLEVIMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKTKE
(restricted) Ga0233413_1043298223300027996SeawaterMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKTKE
Ga0257120_100210373300028284MarineMGKGSKPRPIEIGREEFSKKFDGIDWSNTKEGSIEKKKASKKNENKILPRGRKG
Ga0307488_1003426533300031519Sackhole BrineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKDGSEKKASKKNENKILPRGRKS
Ga0307488_1015877923300031519Sackhole BrineMGKGSKPRPIEIGREEFSKKFDGIDWSNAKEGSEKKASKKNENKILPRGRKTKE
Ga0316208_111499923300032254Microbial MatMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKESSEQTKKTPKKNQNKILPRGFKD
Ga0316203_102608043300032274Microbial MatMGKGSKPRPIEIGKKEFDKKFDAIDWSNTKEATSPPVKKNKNSILPRKK
Ga0316202_1001772833300032277Microbial MatMGKGSKPRPIEIGRKEFEKKFDQIDWSNTKEGSIEKKKASKKNENKILPRGRKS
Ga0314858_006995_697_8613300033742Sea-Ice BrineMGKGSKPRPIDIGREEFSKKFDGIDWSNTKEGSEKKASKKNENKILPRGRKTKE

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.