Metagenome / Metatranscriptome Family F097812

Basic Information
Family ID	F097812
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	41 residues
Representative Sequence	DDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Number of Associated Samples	91
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.92 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	95.19 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Most Common Taxonomy
Group	Bacteria (50.962 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.538 % of family members)
Environment Ontology (ENVO)	Unclassified (42.308 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.154 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.90% β-sheet: 0.00% Coil/Unstructured: 79.10%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF07784	DUF1622	11.54
PF00196	GerE	4.81
PF00923	TAL_FSA	2.88
PF08281	Sigma70_r4_2	2.88
PF12973	Cupin_7	2.88
PF13191	AAA_16	1.92
PF05201	GlutR_N	1.92
PF00440	TetR_N	1.92
PF07992	Pyr_redox_2	1.92
PF06441	EHN	0.96
PF00708	Acylphosphatase	0.96
PF13474	SnoaL_3	0.96
PF01242	PTPS	0.96
PF13610	DDE_Tnp_IS240	0.96
PF00903	Glyoxalase	0.96
PF02540	NAD_synthase	0.96
PF13358	DDE_3	0.96
PF00999	Na_H_Exchanger	0.96
PF12840	HTH_20	0.96
PF07282	OrfB_Zn_ribbon	0.96
PF04185	Phosphoesterase	0.96
PF14759	Reductase_C	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG4828	Uncharacterized membrane protein	Function unknown [S]	11.54
COG0176	Transaldolase/fructose-6-phosphate aldolase	Carbohydrate transport and metabolism [G]	2.88
COG0373	Glutamyl-tRNA reductase	Coenzyme transport and metabolism [H]	1.92
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.96
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.96
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.96
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.96
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	0.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.96
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.96
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.96 %
Unclassified	root	N/A	49.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.58 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.96 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.96 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.96 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.96 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.96 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.96 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.96 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.96 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.92 %
Actinopolymorphaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae	0.96 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.96 %
Ktedonosporobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae	0.96 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.96 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.96 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Knoellia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia	1.92 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.96 %
Ktedonosporobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.96 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Knoellia sinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis	1.92 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.96 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.96 %
Sphingomonas sp. RIT328	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RIT328	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.04 %
Knoellia sinensis KCTC 19936	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis → Knoellia sinensis KCTC 19936	1.92 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.96 %
Ktedonosporobacter rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	0.96 %
Sphingomonas sp. RIT328	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RIT328	0.96 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.96 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.96 %
Actinopolymorpha	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	0.96 %
Methylocystis rosea	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	0.96 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.96 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_74590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	766	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101963541	Not Available	608	Open in IMG/M
3300002028\|A17_1213572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	650	Open in IMG/M
3300002568\|C688J35102_120295991	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300004629\|Ga0008092_11282719	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005332\|Ga0066388_102014802	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300005363\|Ga0008090_10044702	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005363\|Ga0008090_15165540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis rosea	500	Open in IMG/M
3300005468\|Ga0070707_101309660	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300005535\|Ga0070684_101565243	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005764\|Ga0066903_101492618	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300005764\|Ga0066903_105102788	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005764\|Ga0066903_108178911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	535	Open in IMG/M
3300006032\|Ga0066696_10621119	Not Available	700	Open in IMG/M
3300006034\|Ga0066656_10219272	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300006175\|Ga0070712_100401851	Not Available	1132	Open in IMG/M
3300006796\|Ga0066665_10929305	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300006852\|Ga0075433_11095542	Not Available	693	Open in IMG/M
3300006954\|Ga0079219_10127027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1313	Open in IMG/M
3300009137\|Ga0066709_100497491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1716	Open in IMG/M
3300009147\|Ga0114129_10734753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1265	Open in IMG/M
3300009147\|Ga0114129_11524768	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300009792\|Ga0126374_11168149	Not Available	614	Open in IMG/M
3300010040\|Ga0126308_10311357	Not Available	1037	Open in IMG/M
3300010045\|Ga0126311_10120532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1830	Open in IMG/M
3300010046\|Ga0126384_10799004	Not Available	844	Open in IMG/M
3300010154\|Ga0127503_11100111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300010358\|Ga0126370_10839590	Not Available	823	Open in IMG/M
3300010359\|Ga0126376_10772051	Not Available	934	Open in IMG/M
3300010360\|Ga0126372_12786918	Not Available	541	Open in IMG/M
3300010373\|Ga0134128_11779162	Not Available	678	Open in IMG/M
3300010376\|Ga0126381_101603915	Not Available	940	Open in IMG/M
3300010376\|Ga0126381_104043351	Not Available	570	Open in IMG/M
3300010398\|Ga0126383_10727686	Not Available	1072	Open in IMG/M
3300010398\|Ga0126383_11304575	Not Available	816	Open in IMG/M
3300010398\|Ga0126383_13649981	Not Available	503	Open in IMG/M
3300012198\|Ga0137364_10575555	Not Available	848	Open in IMG/M
3300012201\|Ga0137365_10260155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1289	Open in IMG/M
3300012202\|Ga0137363_10103766	All Organisms → cellular organisms → Bacteria	2165	Open in IMG/M
3300012204\|Ga0137374_10213715	Not Available	1649	Open in IMG/M
3300012207\|Ga0137381_10351459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1285	Open in IMG/M
3300012941\|Ga0162652_100071692	Not Available	591	Open in IMG/M
3300012957\|Ga0164303_10717529	Not Available	676	Open in IMG/M
3300012989\|Ga0164305_11360845	Not Available	623	Open in IMG/M
3300013102\|Ga0157371_10662981	Not Available	779	Open in IMG/M
3300015372\|Ga0132256_100532637	Not Available	1286	Open in IMG/M
3300016294\|Ga0182041_11258632	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300016422\|Ga0182039_11211539	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300017972\|Ga0187781_10254293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1243	Open in IMG/M
3300018062\|Ga0187784_10213206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1575	Open in IMG/M
3300020581\|Ga0210399_11489765	Not Available	525	Open in IMG/M
3300021560\|Ga0126371_10944401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Actinopolymorphaceae → Actinopolymorpha	1005	Open in IMG/M
3300021560\|Ga0126371_11900641	Not Available	714	Open in IMG/M
3300025922\|Ga0207646_10697011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonosporobacteraceae → Ktedonosporobacter → Ktedonosporobacter rubrisoli	908	Open in IMG/M
3300026300\|Ga0209027_1143030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	820	Open in IMG/M
3300026538\|Ga0209056_10706980	Not Available	510	Open in IMG/M
3300027905\|Ga0209415_10034898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7057	Open in IMG/M
3300028592\|Ga0247822_11013180	Not Available	686	Open in IMG/M
3300031446\|Ga0170820_14154926	Not Available	780	Open in IMG/M
3300031474\|Ga0170818_111837720	Not Available	505	Open in IMG/M
3300031543\|Ga0318516_10472071	Not Available	721	Open in IMG/M
3300031543\|Ga0318516_10786159	Not Available	538	Open in IMG/M
3300031545\|Ga0318541_10173460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300031546\|Ga0318538_10210648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis → Knoellia sinensis KCTC 19936	1039	Open in IMG/M
3300031561\|Ga0318528_10269064	Not Available	914	Open in IMG/M
3300031564\|Ga0318573_10574043	Not Available	607	Open in IMG/M
3300031640\|Ga0318555_10608046	Not Available	592	Open in IMG/M
3300031713\|Ga0318496_10199651	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300031723\|Ga0318493_10495703	Not Available	675	Open in IMG/M
3300031744\|Ga0306918_10656930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300031764\|Ga0318535_10145492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300031765\|Ga0318554_10160106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1279	Open in IMG/M
3300031769\|Ga0318526_10080724	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300031770\|Ga0318521_10292202	All Organisms → cellular organisms → Bacteria	958	Open in IMG/M
3300031777\|Ga0318543_10159706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia sinensis → Knoellia sinensis KCTC 19936	993	Open in IMG/M
3300031780\|Ga0318508_1082624	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300031796\|Ga0318576_10302348	Not Available	756	Open in IMG/M
3300031799\|Ga0318565_10635995	Not Available	512	Open in IMG/M
3300031805\|Ga0318497_10308345	Not Available	882	Open in IMG/M
3300031805\|Ga0318497_10752008	Not Available	546	Open in IMG/M
3300031859\|Ga0318527_10320050	Not Available	661	Open in IMG/M
3300031860\|Ga0318495_10038116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2113	Open in IMG/M
3300031893\|Ga0318536_10040685	Not Available	2215	Open in IMG/M
3300031894\|Ga0318522_10369448	Not Available	543	Open in IMG/M
3300031896\|Ga0318551_10511635	Not Available	689	Open in IMG/M
3300031896\|Ga0318551_10705640	Not Available	585	Open in IMG/M
3300031903\|Ga0307407_10155062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1492	Open in IMG/M
3300031912\|Ga0306921_11164736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300031912\|Ga0306921_11550556	Not Available	722	Open in IMG/M
3300031912\|Ga0306921_12602654	Not Available	522	Open in IMG/M
3300031941\|Ga0310912_10065062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2607	Open in IMG/M
3300031946\|Ga0310910_10499163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. RIT328	966	Open in IMG/M
3300031954\|Ga0306926_10815303	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300032002\|Ga0307416_102856297	Not Available	578	Open in IMG/M
3300032025\|Ga0318507_10212225	Not Available	836	Open in IMG/M
3300032039\|Ga0318559_10166730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1005	Open in IMG/M
3300032043\|Ga0318556_10619403	Not Available	564	Open in IMG/M
3300032044\|Ga0318558_10625284	Not Available	538	Open in IMG/M
3300032066\|Ga0318514_10405546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300032067\|Ga0318524_10742649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	518	Open in IMG/M
3300032089\|Ga0318525_10269783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	874	Open in IMG/M
3300032090\|Ga0318518_10524286	Not Available	606	Open in IMG/M
3300032091\|Ga0318577_10502560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	578	Open in IMG/M
3300033289\|Ga0310914_10384315	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.27%
Host-Associated	Host-Associated	6.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.31%
Plants	Host-Associated → Plants	6.73%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.73%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.77%
Loam	Environmental → Terrestrial → Soil → Loam	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	45.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.08%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.88%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.96%
Permafrost And Active Layer Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost And Active Layer Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002028	Permafrost and active layer soil microbial communities from McGill Arctic Research Station (MARS), Canada, for enrichment studies - Sample_A17	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097812

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_01210990	2199352024	Soil	VHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS
INPhiseqgaiiFebDRAFT_1019635411	3300000364	Soil	GRCNRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
A17_12135721	3300002028	Permafrost And Active Layer Soil	RTLDHFNVPEREKGEALAAFNGWKGEVTAGSDPDAVNWRRWN*
C688J35102_1202959913	3300002568	Soil	LDDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWP*
Ga0008092_112827191	3300004629	Tropical Rainforest Soil	NALDDFNVPEREKQEVLAAFDGEKGEVSAGSQPGAVNWRRWR*
Ga0066388_1020148024	3300005332	Tropical Forest Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0008090_100447021	3300005363	Tropical Rainforest Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR*
Ga0008090_151655401	3300005363	Tropical Rainforest Soil	ALDDFNVPEREKNEVLGAFGGEKGEVTAGSQPGAVNWATWD*
Ga0070707_1013096602	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TLDHFKVPEREKGEVLSAFARWKGEVTAGSEPGSVNWRRWR*
Ga0070684_1015652431	3300005535	Corn Rhizosphere	VSAELANALDDFNVPEREKQEVLAAFNREKSEVSAGSQPGAVNWRRWH*
Ga0066903_1014926181	3300005764	Tropical Forest Soil	QELINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR*
Ga0066903_1051027881	3300005764	Tropical Forest Soil	VPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR*
Ga0066903_1081789111	3300005764	Tropical Forest Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0066696_106211191	3300006032	Soil	DDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0066656_102192723	3300006034	Soil	LTLDHFKVPEREKGEVLGTFARWKGEVTAGSESGSVNWRRWR*
Ga0070712_1004018511	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ELANALDEFQVPEREKQEVLAGFAGEKSEVTAGSQPGAVNWRRWR*
Ga0066665_109293052	3300006796	Soil	HFKVPEREKGEVLAAFAGWKGEVTAGSEPGSVNWRRWR*
Ga0075433_110955421	3300006852	Populus Rhizosphere	LDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRRWR*
Ga0079219_101270273	3300006954	Agricultural Soil	GRRLRPRPVHGDGRLDDFNLPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
Ga0066709_1004974913	3300009137	Grasslands Soil	GRRLRPRPVHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS*
Ga0114129_107347531	3300009147	Populus Rhizosphere	PEREKGEVLAAFGGWKDEVTAGSKPGAVNWRRWR*
Ga0114129_115247683	3300009147	Populus Rhizosphere	GATLDHFGVPEREKGEVLDAFASRKGEVTAGSERGAVNWRRWRSGA*
Ga0126374_111681492	3300009792	Tropical Forest Soil	LDDFNVPEREKGEVLAAFAGEKSEVSAGSQPGAVNWRRWRS*
Ga0126308_103113571	3300010040	Serpentine Soil	HFSVPGGEKEEVLAAFNGWKEEVTAGSQPDAINWRRWR*
Ga0126311_101205321	3300010045	Serpentine Soil	TLDHFNVPEREQEEVLAAFNGWKEEVTAGSQPGAINWRRWR*
Ga0126384_107990042	3300010046	Tropical Forest Soil	VPEREKQEVLAAFAAEKGEVSAGSQPGAVNWRSWR*
Ga0127503_111001112	3300010154	Soil	FKVPEREKGEVLGAFAGWKGEVTAGSEPGVVNWRRWH*
Ga0126370_108395901	3300010358	Tropical Forest Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0126376_107720512	3300010359	Tropical Forest Soil	GMIRLRTVLDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGEVNWRRWR*
Ga0126372_127869182	3300010360	Tropical Forest Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR*
Ga0134128_117791622	3300010373	Terrestrial Soil	DFNVPEREKQEVLAAFNGEKGEVSAGSQPGAVNWRRWR*
Ga0126381_1016039153	3300010376	Tropical Forest Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP*
Ga0126381_1040433511	3300010376	Tropical Forest Soil	VPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR*
Ga0126383_107276861	3300010398	Tropical Forest Soil	SVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0126383_113045752	3300010398	Tropical Forest Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR*
Ga0126383_136499811	3300010398	Tropical Forest Soil	DAFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0137364_105755551	3300012198	Vadose Zone Soil	TLDEFNVPEREKGEVLAGFAGEKSEVTAGSQPGAVNWRRWR*
Ga0137365_102601553	3300012201	Vadose Zone Soil	VHRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS*
Ga0137363_101037663	3300012202	Vadose Zone Soil	MDEFQVPDREKQEVLAAFANEKGAVTAGSQPEAVNWRRWR*
Ga0137374_102137154	3300012204	Vadose Zone Soil	FKVPEREKGEALAAFNGWKDEVTAGSKPGAVNWRRWH*
Ga0137381_103514591	3300012207	Vadose Zone Soil	HRDGRLDDFNVPEREKQEVLAAFAGEKGEVSAGSPSGAVNWRRWS*
Ga0162652_1000716922	3300012941	Soil	LDDFNVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH*
Ga0164303_107175292	3300012957	Soil	TLDHFNVPEREKGEVLTAFGGWKGEVTAGSKEGAVNWRRWH*
Ga0164305_113608452	3300012989	Soil	DFHVPEREKGEVLAGFAGEKGEVTAGSQPEAVNWRRWR*
Ga0157371_106629811	3300013102	Corn Rhizosphere	LDDFNVPEREKGEVLAGFAGGKGAVTAGSQPGAVNWRRWR*
Ga0132256_1005326373	3300015372	Arabidopsis Rhizosphere	DDFNVPEREKQEVLAAFNGEKGEVSAGSQPGEVNWRRWR*
Ga0182041_112586321	3300016294	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0182039_112115391	3300016422	Soil	LINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0187781_102542931	3300017972	Tropical Peatland	FKVPGREKAEVLEAFAGWKGEVTAGSAPESVNWRRWR
Ga0187784_102132063	3300018062	Tropical Peatland	MSPEPTDFKVPGREKAEVLEAFAGWKGEVTAGSAPESVNWRRWR
Ga0210399_114897651	3300020581	Soil	QELINALNEFKVPEREKQEVLAAFANEKGEVTAGSQPGAVNWRRWR
Ga0126371_109444013	3300021560	Tropical Forest Soil	VPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0126371_119006411	3300021560	Tropical Forest Soil	AMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP
Ga0207646_106970112	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TLDHFKVPEREKGEVLSAFARWKGEVTAGSEPGSVNWRRWR
Ga0209027_11430301	3300026300	Grasslands Soil	LTLDHFKVPEREKGEVLGAFARWKGEVTAGSEPGSVNWRRWR
Ga0209056_107069802	3300026538	Soil	FNVPEREKQEVLAAFAGEKGEVSAGFPSGAVNWRRWS
Ga0209415_100348981	3300027905	Peatlands Soil	HFKVPEREKDQVLDAFAGWKGEVTAGSKPEAVNWRRWR
Ga0247822_110131802	3300028592	Soil	LTLEHFRVPERERGEVLGAFAGWKGEVTAGSEPGATNWRRWRSRP
Ga0170820_141549261	3300031446	Forest Soil	LDDFNVPEREKGEVLAGFAGEKSEVSAGSQPGAVNWRRWR
Ga0170818_1118377201	3300031474	Forest Soil	SAELANALDDFNVPEREKQEVLAAFNGEKGEVSAGSQPGEVNWRRWR
Ga0318516_104720712	3300031543	Soil	DFKVPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318516_107861591	3300031543	Soil	DFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318541_101734602	3300031545	Soil	FKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318538_102106481	3300031546	Soil	AMDEFKVPEREKQEVLAAFAAEKGEVTAGSQPGAVNWRSWH
Ga0318528_102690643	3300031561	Soil	AMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318573_105740431	3300031564	Soil	LDDFKVPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318555_106080461	3300031640	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWP
Ga0318496_101996512	3300031713	Soil	QELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318493_104957031	3300031723	Soil	FNVPEREKAEVLAGFAGEKGEVTAGSQRGAVNWRRWR
Ga0306918_106569303	3300031744	Soil	AELSYTLDHFQVPEPEKGEVLGAFAGWRGEVTAGAEPGAVNWRRWR
Ga0318535_101454921	3300031764	Soil	LDDFKVPEPEKGEVLGAFAGWRGEVTAGAQPEAVNWRRWR
Ga0318554_101601064	3300031765	Soil	FKVPEREKAEVLAAFGAEKGEVTAGSQPGQVNWRRWR
Ga0318526_100807241	3300031769	Soil	DFKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318521_102922022	3300031770	Soil	DDFHVPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0318543_101597062	3300031777	Soil	TQELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318508_10826243	3300031780	Soil	RHTLDHFGVPEREKGEVLGAFGAERREVTAGSQPGAVNWRRWR
Ga0318576_103023482	3300031796	Soil	VPEREKAEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0318565_106359951	3300031799	Soil	DDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318497_103083453	3300031805	Soil	MDDFKVPDREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318497_107520082	3300031805	Soil	ELINAMDDFKVPDREKAEVLAAFGAEKGEVTAGSQPGEVNWRRWR
Ga0318527_103200502	3300031859	Soil	FKVPEREKAEVLAAFGGEKGEVSAGSQPGAVNWRRWR
Ga0318495_100381164	3300031860	Soil	FKVPEREKAEVLAAFGAEKGEVTASSQPGEVNWRRWR
Ga0318536_100406853	3300031893	Soil	INAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318522_103694482	3300031894	Soil	KVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0318551_105116352	3300031896	Soil	DDFKVPEREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318551_107056401	3300031896	Soil	LDDFNVPEREKGEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0307407_101550621	3300031903	Rhizosphere	VPEREKGEVLAAFGGWKDEVTAGSKQGAVNWRRWR
Ga0306921_111647362	3300031912	Soil	NAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0306921_115505561	3300031912	Soil	LINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0306921_126026542	3300031912	Soil	MDDFKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0310912_100650621	3300031941	Soil	FKVPEREKAEVLAAFGAEKGEVTAGSQPGAVNWRRWR
Ga0310910_104991632	3300031946	Soil	DDFNVPEREKGEVLAGFAGEKGEVTAGSQPGAVNWRRWR
Ga0306926_108153032	3300031954	Soil	FEVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR
Ga0307416_1028562971	3300032002	Rhizosphere	RTLDHFSVPEREKEEVLAAFNGWKEEVTAGSKPGAINWRRWR
Ga0318507_102122252	3300032025	Soil	VPEREKGEVLAAFAAEKGEVSAGSQPGAVNWRRWR
Ga0318559_101667303	3300032039	Soil	VPDREKAEVLAAFGAEKGEVTAGSQSGEVNWRRWR
Ga0318556_106194031	3300032043	Soil	ELINAMDDFKVPEREKAEVLAAFGAEKGEVTAGSEPGQVNWRRWR
Ga0318558_106252842	3300032044	Soil	STLDDFKVPEREKAEVLAAFGGEKGEVSAGSQPGAVNWRRWR
Ga0318514_104055461	3300032066	Soil	FKVPEREKAEVLAAFGAEKGEVTASSQPGEANWRRWR
Ga0318524_107426493	3300032067	Soil	TLDHFQVPEPEKGEVLGAFAGWRGEVTAGAEPGAVNWRRWR
Ga0318525_102697831	3300032089	Soil	DDFNVPEREKQEVLAAFADEEGEVSAGSPSGAVNWRRWS
Ga0318518_105242861	3300032090	Soil	DDFKVPEREKGEVLAAFAAEKGEVSAGSQPEAVNWRRWR
Ga0318577_105025603	3300032091	Soil	VPEPEKGEVLGAFAGWRGEVTAGAQPEAVNWRRWR
Ga0310914_103843151	3300033289	Soil	KVPEREKAEVLAAFGAEKGEVTAGSEPGAVNWRRWR

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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