Basic Information | |
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Family ID | F097874 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 104 |
Average Sequence Length | 38 residues |
Representative Sequence | VRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKN |
Number of Associated Samples | 90 |
Number of Associated Scaffolds | 104 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 4.81 % |
% of genes near scaffold ends (potentially truncated) | 95.19 % |
% of genes from short scaffolds (< 2000 bps) | 86.54 % |
Associated GOLD sequencing projects | 86 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (71.154 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.462 % of family members) |
Environment Ontology (ENVO) | Unclassified (25.962 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.962 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 46.15% β-sheet: 0.00% Coil/Unstructured: 53.85% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Peatland Freshwater Sediment Watersheds Soil Vadose Zone Soil Tropical Forest Soil Surface Soil Peatlands Soil Soil Forest Soil Soil Hardwood Forest Soil Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Agricultural Soil Palsa Bog Peat Soil Corn Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12270J11330_102902932 | 3300000567 | Peatlands Soil | GPFVKRLGPGAMGAINRIFGFLILAIAVQLVWNGAADFRV* |
JGIcombinedJ26739_1014912692 | 3300002245 | Forest Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFGN* |
Ga0070661_1002257171 | 3300005344 | Corn Rhizosphere | PLVQWLGPNAAGSINRIFGFLILAVAVQLIWDGISEFRT* |
Ga0070703_104090001 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | LGGPLVARLGPGAVAGITRIFGFLIFAVAVQLVWDGAAKFGK* |
Ga0070734_100679773 | 3300005533 | Surface Soil | LGPSAVGAINKIFGFLILAIAVQLVWDGVADFNS* |
Ga0070734_101714751 | 3300005533 | Surface Soil | GGPLVERLGPNATGSINRIFGFLILAVAVQLIWDGISDFRT* |
Ga0070762_103349292 | 3300005602 | Soil | LGPSAVGAINKIFGFLILAIAVQLVWNGMADFRN* |
Ga0070764_106813321 | 3300005712 | Soil | VKRLGPGTVGAINRIFGFLILAIAVQLLWDGFAQFGR* |
Ga0070766_105765981 | 3300005921 | Soil | GPFVKRLGPGALGAINRIFGFLILAIAVQLVWNGAADFRG* |
Ga0075017_1008470832 | 3300006059 | Watersheds | LVARLGPGAVAGITRIFGFLIFAVAVQLVWDGAADFGH* |
Ga0075017_1010898781 | 3300006059 | Watersheds | VKRLGPGAVGAINRIFGFLILAIAVQLVWNGAADFRG* |
Ga0075019_100808801 | 3300006086 | Watersheds | LGPSAVGAINKIFGFLILAIAVQLVWNGIADFKN* |
Ga0075015_1003720182 | 3300006102 | Watersheds | LGGPLVERLGPGAVAGITRIFGFLIFAVAVQLVWDGVAEFGR* |
Ga0070716_1015003291 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | PLVARLGPGAVAGITRIFGFLIFAVAVQLVWDGAAKFGK* |
Ga0070712_1010428432 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | GPFVNLLGPSAMGAINRIFGFLILSIAVQLVWNGAADFRH* |
Ga0070765_1000623341 | 3300006176 | Soil | PLVRRLGPGAVGAINKIFGFLILAIAVQLMWDGAADFGH* |
Ga0105245_109856342 | 3300009098 | Miscanthus Rhizosphere | RLGGPLVAKLGPGMVAGITRIFGFLIFAVAVQLVWDGIAEFGK* |
Ga0116108_10206383 | 3300009519 | Peatland | GGPFVKRLGPGVMGAINRIFGFLILAIAVQLVWNGAADFRG* |
Ga0116214_13699652 | 3300009520 | Peatlands Soil | GGPPVRRLGPSAVGAINKIFGFLILAIAVQLVWNGVADFRN* |
Ga0116219_100890626 | 3300009824 | Peatlands Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFNS* |
Ga0126373_104546261 | 3300010048 | Tropical Forest Soil | VRKLGPTALGAINKICGFLILAIAVQLVCDGIADFKS* |
Ga0126379_114762452 | 3300010366 | Tropical Forest Soil | LGPGATGAINRIFGFLILAIAVQLIWDGMVDFKA* |
Ga0105239_121727882 | 3300010375 | Corn Rhizosphere | VAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFR* |
Ga0126381_1023632511 | 3300010376 | Tropical Forest Soil | RLGPSAVGAISRIFGFLILAIAVQLVWDGVAEFKMGQ* |
Ga0136449_1001562871 | 3300010379 | Peatlands Soil | LGPGAVGAINKIFGFLILAIAVQLVWNGVADFKN* |
Ga0136449_1017283162 | 3300010379 | Peatlands Soil | GQGAVGSINRIFGFLILAIAVQLVTTGLTDLHVIS* |
Ga0136449_1020909552 | 3300010379 | Peatlands Soil | LGPNAVGAINKIFGFLILAIAVQLVWDGVADFNS* |
Ga0150983_130539332 | 3300011120 | Forest Soil | RLGPSAVGAISRIFGFLILAIAVQLVWDGVAEFK* |
Ga0137391_115413042 | 3300011270 | Vadose Zone Soil | YLFLRLGGPLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFRQ* |
Ga0137362_103363512 | 3300012205 | Vadose Zone Soil | VARLGPGAVAGITRIFGFLIFAVAVQLVWDGAAEFGK* |
Ga0137362_110098192 | 3300012205 | Vadose Zone Soil | YLFLRLGGPLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFRS* |
Ga0137395_109979702 | 3300012917 | Vadose Zone Soil | LGPGAVAGITRIFGFLIFAVAVQLVWDGVAEFGK* |
Ga0137416_111605672 | 3300012927 | Vadose Zone Soil | LVGRLGPSAAGAISRIFGFLILAIAVQLIWDGVADFRG* |
Ga0126375_108678201 | 3300012948 | Tropical Forest Soil | KLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKS* |
Ga0126369_117641712 | 3300012971 | Tropical Forest Soil | LGPSAVGAINKIFGFLILAIAVQLVSDGVADFLT* |
Ga0164305_104770691 | 3300012989 | Soil | PLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFGK* |
Ga0157378_100991873 | 3300013297 | Miscanthus Rhizosphere | GPLVAKLGPGMVAGITRIFGFLIFAVAVQLVWDGVAEFGK* |
Ga0181530_100643061 | 3300014159 | Bog | GPFVKRLGPGVMGAINRIFGFLILAIAVQLVWNGAADFRG* |
Ga0181523_100239991 | 3300014165 | Bog | LVRRLGPSAVGAINKIFGFLILAIAVQLVWNGAADFRN* |
Ga0181523_103613542 | 3300014165 | Bog | VRRLGPSAVGAINKIFGFLILAIAVQLVWNGAADFRN* |
Ga0181531_100515293 | 3300014169 | Bog | VRRLGPTAVGAINKVFGFLILAIAVQLVWDGVADFNS* |
Ga0181531_105895632 | 3300014169 | Bog | KRLGPGAVGAISRIFGFLILSIAVQLVWDGVADFKG* |
Ga0137405_12068111 | 3300015053 | Vadose Zone Soil | AQPQRSVYLFLRLGGPLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFRS* |
Ga0182033_113461691 | 3300016319 | Soil | VRKLGPSAVGAINKIFGFLILAIAVQLVWNGIAEFKN |
Ga0182037_121735531 | 3300016404 | Soil | KLGPSAVGAINKIFGFLILAIAVQLVSDGIADFRN |
Ga0187824_100673482 | 3300017927 | Freshwater Sediment | LRLGGPLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGAADFGR |
Ga0187801_100779621 | 3300017933 | Freshwater Sediment | LVRRLGPGAVGAINKIFGFLILAIAVQLVWNGIADFNS |
Ga0187778_101812001 | 3300017961 | Tropical Peatland | RLGPASVGAINKIFGFLILAIAVQLVWNGVADFNS |
Ga0187776_109933842 | 3300017966 | Tropical Peatland | VKRLGPGASGAINRIFGFLLLAIAVQLVWDGVADFKA |
Ga0187781_109066092 | 3300017972 | Tropical Peatland | PFVKRLGPGAVGAINRIFGFLILAIAVQLLWNGAADFRR |
Ga0187781_112804011 | 3300017972 | Tropical Peatland | RLGPSAVGAINKIFGFLILAIAVQLVWNGVADFRN |
Ga0187782_113013992 | 3300017975 | Tropical Peatland | VRRLGPSAVGAINKIFGFLILAIAVQLVWDGIADFNG |
Ga0187805_100129066 | 3300018007 | Freshwater Sediment | RLGPSAVGAINKIFGFLILAIAVQLVWNGMADFRN |
Ga0187858_102637561 | 3300018057 | Peatland | RLGPGAVGAINKIFGFLILAIAVQLVWDGVADFNR |
Ga0187772_104898001 | 3300018085 | Tropical Peatland | KRLGPGAVGAINRIFGFLILAIAVQLVWDGVADFRG |
Ga0187770_115422192 | 3300018090 | Tropical Peatland | VNRLGPGTVGAINRIFGFLILAIAVQLVWNGVADFRS |
Ga0210407_101884334 | 3300020579 | Soil | VERLGPCATGAINRIFGFLILAIAVQLLWDGVADFK |
Ga0210403_101036021 | 3300020580 | Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWNGVADFRN |
Ga0210401_102297192 | 3300020583 | Soil | VGRLGPSAVGAISRIFGFLILAIAVQLIWDGVADFKG |
Ga0210404_105522181 | 3300021088 | Soil | YLFLRLGGPLVARLGPGAVAGITRIFGFLIFAVAVQLVWDGAAKFGK |
Ga0210406_1000087130 | 3300021168 | Soil | LVERLGPCATGAINRIFGFLILAIAVQLLWDGVADFK |
Ga0210405_106676811 | 3300021171 | Soil | FLRLGGPLVARMGPGAVAGITRIFGFLIFAVAVQLVWDGVADFRQ |
Ga0210393_106330202 | 3300021401 | Soil | VLVKRLGPGAAVAIDRIFGFLLLAIAVQLVWNGGP |
Ga0210393_110093132 | 3300021401 | Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWNGMADFRN |
Ga0210385_104401051 | 3300021402 | Soil | VRRLGPSAVGAINKIFGFLILAIAVQLVWNGMADFHN |
Ga0210386_107738812 | 3300021406 | Soil | GPWVRRLGPNAVGAINKIFGFLILAIAVQLVWDGVADFHS |
Ga0210402_104309062 | 3300021478 | Soil | RLGPGAAGGINRIFGFLLLAIAVQLVWDGVADFPH |
Ga0210409_111224681 | 3300021559 | Soil | VRRLGPSAVGAINKIFGFLILAIAVQLVWNGVADFKS |
Ga0242662_102770221 | 3300022533 | Soil | RRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFK |
Ga0242661_10069355 | 3300022717 | Soil | LVERLGPCTTGAITRIFGFLILAIAVQLVWDGVAYFK |
Ga0224564_10528193 | 3300024271 | Soil | VERLGTCTTGAINRIFGFLILAIAVQLVWDGVAYFK |
Ga0207653_102871412 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | LRLGGPLVARLGPGAVAGITRIFGFLIFAVAVQLVWDGAAKFGK |
Ga0207654_113171973 | 3300025911 | Corn Rhizosphere | GGPLVARLGPSAAGAINRIFGFLILSVAVQLLWDGLAEFQFGR |
Ga0207694_102977642 | 3300025924 | Corn Rhizosphere | LFLRLGGPLVAKLGPGMVAGITRIFGFLIFAVAVQLVWDGVAEFGK |
Ga0207664_105238652 | 3300025929 | Agricultural Soil | VDRLGPGTVGAINRIFGFLILAIAVQLVWDGVAEFK |
Ga0207670_113998621 | 3300025936 | Switchgrass Rhizosphere | RLGGPLVAKLGPGAVAGITRIFGFLIFAVAVQLVWDGVADFGK |
Ga0207640_102343672 | 3300025981 | Corn Rhizosphere | ARLGPNTVGAINRIFGFLILAIAVQLVWDGIADFRG |
Ga0179587_101640331 | 3300026557 | Vadose Zone Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKG |
Ga0179587_107888691 | 3300026557 | Vadose Zone Soil | PLVGRLGPSAAGAISRIFGFLILAIAVQLIWDGVADFRG |
Ga0207777_10460172 | 3300027330 | Tropical Forest Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWNGVADFKN |
Ga0209008_11521582 | 3300027545 | Forest Soil | RLGPSAVGAINKIFGFLILAIAVQLVWDGVADFNS |
Ga0209624_100061664 | 3300027895 | Forest Soil | LWLGEPQARRLGPHAVGVINKIFGFLILAIAVQLVWNGIADFKN |
Ga0209067_100958251 | 3300027898 | Watersheds | RLGPGAVGAINRIFGFLILAIAVQLVWNGVADFKG |
Ga0209067_102790331 | 3300027898 | Watersheds | PGAVGAINRIFGFLILAIAVQLIWNGAMDFRGGMPS |
Ga0209698_111696382 | 3300027911 | Watersheds | VKRLGPGAVGAINRIFGFLILAIAVQLVWNGAAAFHT |
Ga0302147_103116801 | 3300028566 | Bog | RLGPGAVGAINRIFGFLILAIAVQLVWNGMADFHR |
Ga0308309_106559141 | 3300028906 | Soil | RRLGPGAVGAINKIFGFLILAIAVQLMWDGAADFGH |
Ga0308309_114537971 | 3300028906 | Soil | RRLGPSAVGAINKIFGFLILAIAVQLVWNGMADFHN |
Ga0302188_104075901 | 3300029986 | Bog | LVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKS |
Ga0302271_103770172 | 3300029998 | Bog | RLGPGAIGAINRIFGFLILAIAVQLVWDGVVDFRA |
Ga0311353_106827372 | 3300030399 | Palsa | VRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKN |
Ga0265765_10709281 | 3300030879 | Soil | RWLGPNAVGAINKIFGFLILAIAVQLVWDGVADFGS |
Ga0302180_101464173 | 3300031028 | Palsa | RLGPSAVGAINKIFGFLILAIAVQLVWDGVADFKG |
Ga0170834_1102561632 | 3300031057 | Forest Soil | FWMGGPLVGRLGPSAVGAINKIFCFLILAIAVQLVWDGVADFKT |
Ga0170824_1270563492 | 3300031231 | Forest Soil | FWMGGPLVGRLGPSAVGAINKIFCFLILAIAVQLVWDGVADFRS |
Ga0310686_1021725851 | 3300031708 | Soil | LVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFRT |
Ga0310686_1111193524 | 3300031708 | Soil | VRRLGPNAVGAINKIFGFLILAIAVQLVWDGVADFHS |
Ga0307475_100773103 | 3300031754 | Hardwood Forest Soil | VKRLGPGATGAINRIFGFLILALAVQLVWDGAAQFSR |
Ga0307478_108666422 | 3300031823 | Hardwood Forest Soil | MVRRLGPSAVGAINKIFGFLILAIAVQLVWDGVADFGN |
Ga0307478_118075371 | 3300031823 | Hardwood Forest Soil | RLGPNAVGAINKIFGFLILAIAVQLVWDGVADFKS |
Ga0307471_1024676922 | 3300032180 | Hardwood Forest Soil | QLGPSAVGAISRIFGFLILAFAVQLIWDGVADFRV |
Ga0307472_1007156331 | 3300032205 | Hardwood Forest Soil | FVNLLGPSAMGAINRIFGFLILSIAVQLVWNGAADFQH |
Ga0335071_113359683 | 3300032897 | Soil | GPTATGAINRIFGFLILSVAVQLIWDGLAEFQFVK |
Ga0326724_0006167_14533_14640 | 3300034091 | Peat Soil | RLGPGAVGAIARIFGFLILAIAVQLVWDGVADFRG |
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