NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F098055

Metagenome Family F098055

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F098055
Family Type Metagenome
Number of Sequences 104
Average Sequence Length 41 residues
Representative Sequence MRSACDEETPHCNWCERPMTEEEHDFCDICDECREENELD
Number of Associated Samples 80
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 20.19 %
% of genes near scaffold ends (potentially truncated) 31.73 %
% of genes from short scaffolds (< 2000 bps) 65.38 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (52.885 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(50.962 % of family members)
Environment Ontology (ENVO) Unclassified
(88.462 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.423 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.12%    β-sheet: 2.94%    Coil/Unstructured: 77.94%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 104 Family Scaffolds
PF01068DNA_ligase_A_M 10.58
PF04545Sigma70_r4 8.65
PF02562PhoH 5.77
PF04404ERF 5.77
PF08279HTH_11 0.96
PF14743DNA_ligase_OB_2 0.96
PF04542Sigma70_r2 0.96
PF12116SpoIIID 0.96

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 104 Family Scaffolds
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 10.58
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 10.58
COG1702Phosphate starvation-inducible protein PhoH, predicted ATPaseSignal transduction mechanisms [T] 5.77
COG1875Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domainsGeneral function prediction only [R] 5.77
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.96
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.96
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.96
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.96

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A52.88 %
All OrganismsrootAll Organisms47.12 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10027545All Organisms → Viruses → Predicted Viral2570Open in IMG/M
3300000115|DelMOSum2011_c10052751All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571591Open in IMG/M
3300000947|BBAY92_10024300Not Available1650Open in IMG/M
3300001589|JGI24005J15628_10047948All Organisms → Viruses → Predicted Viral1669Open in IMG/M
3300001589|JGI24005J15628_10171606Not Available636Open in IMG/M
3300004448|Ga0065861_1004605All Organisms → Viruses → Predicted Viral2734Open in IMG/M
3300005821|Ga0078746_1015098All Organisms → Viruses → Predicted Viral1561Open in IMG/M
3300005837|Ga0078893_11093207All Organisms → Viruses → Predicted Viral1424Open in IMG/M
3300006164|Ga0075441_10155729All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.860Open in IMG/M
3300006164|Ga0075441_10261882Not Available635Open in IMG/M
3300006735|Ga0098038_1013825All Organisms → Viruses → Predicted Viral3122Open in IMG/M
3300006735|Ga0098038_1016324Not Available2865Open in IMG/M
3300006735|Ga0098038_1225876Not Available598Open in IMG/M
3300006737|Ga0098037_1022161All Organisms → cellular organisms → Bacteria2370Open in IMG/M
3300006752|Ga0098048_1003548Not Available6291Open in IMG/M
3300006752|Ga0098048_1128275Not Available760Open in IMG/M
3300006789|Ga0098054_1006654Not Available4972Open in IMG/M
3300006789|Ga0098054_1012979Not Available3407Open in IMG/M
3300006793|Ga0098055_1009909Not Available4328Open in IMG/M
3300006793|Ga0098055_1058245All Organisms → Viruses → Predicted Viral1546Open in IMG/M
3300006793|Ga0098055_1124129Not Available1001Open in IMG/M
3300006793|Ga0098055_1137199All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.945Open in IMG/M
3300006793|Ga0098055_1310435All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157589Open in IMG/M
3300006802|Ga0070749_10244158All Organisms → Viruses → Predicted Viral1019Open in IMG/M
3300006919|Ga0070746_10135483All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571208Open in IMG/M
3300006919|Ga0070746_10152876All Organisms → Viruses → Predicted Viral1123Open in IMG/M
3300006920|Ga0070748_1008707All Organisms → Viruses → Predicted Viral4459Open in IMG/M
3300006921|Ga0098060_1027990Not Available1726Open in IMG/M
3300006922|Ga0098045_1110561Not Available644Open in IMG/M
3300006924|Ga0098051_1015253All Organisms → Viruses → Predicted Viral2274Open in IMG/M
3300006924|Ga0098051_1086124All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.848Open in IMG/M
3300006925|Ga0098050_1076900All Organisms → cellular organisms → Bacteria862Open in IMG/M
3300006925|Ga0098050_1087963All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157798Open in IMG/M
3300006929|Ga0098036_1201050Not Available605Open in IMG/M
3300006990|Ga0098046_1050165Not Available977Open in IMG/M
3300007344|Ga0070745_1020858All Organisms → Viruses → Predicted Viral2916Open in IMG/M
3300007681|Ga0102824_1079597All Organisms → cellular organisms → Bacteria → Proteobacteria860Open in IMG/M
3300007900|Ga0111031_1001825Not Available1070Open in IMG/M
3300007973|Ga0105746_1299676Not Available557Open in IMG/M
3300008220|Ga0114910_1056640Not Available1242Open in IMG/M
3300009086|Ga0102812_10258258Not Available948Open in IMG/M
3300009172|Ga0114995_10008948Not Available6310Open in IMG/M
3300009433|Ga0115545_1054035Not Available1536Open in IMG/M
3300009508|Ga0115567_10970427All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157502Open in IMG/M
3300010149|Ga0098049_1049482All Organisms → Viruses → Predicted Viral1342Open in IMG/M
3300010883|Ga0133547_10932361Not Available1688Open in IMG/M
3300017706|Ga0181377_1009448All Organisms → Viruses → Predicted Viral2389Open in IMG/M
3300017706|Ga0181377_1050805Not Available794Open in IMG/M
3300017706|Ga0181377_1053003Not Available771Open in IMG/M
3300017713|Ga0181391_1001343Not Available7264Open in IMG/M
3300017717|Ga0181404_1064783Not Available911Open in IMG/M
3300017719|Ga0181390_1000552Not Available16978Open in IMG/M
3300017720|Ga0181383_1035792All Organisms → Viruses → Predicted Viral1336Open in IMG/M
3300017726|Ga0181381_1014868Not Available1803Open in IMG/M
3300017745|Ga0181427_1059719Not Available939Open in IMG/M
3300017746|Ga0181389_1016102Not Available2393Open in IMG/M
3300017749|Ga0181392_1006881Not Available3852Open in IMG/M
3300017756|Ga0181382_1029879Not Available1655Open in IMG/M
3300017759|Ga0181414_1097843Not Available772Open in IMG/M
3300017762|Ga0181422_1147071Not Available723Open in IMG/M
3300017772|Ga0181430_1125654Not Available753Open in IMG/M
3300017776|Ga0181394_1034718All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571753Open in IMG/M
3300017779|Ga0181395_1086307Not Available1011Open in IMG/M
3300017786|Ga0181424_10148929Not Available1003Open in IMG/M
3300020347|Ga0211504_1013298All Organisms → Viruses → Predicted Viral2380Open in IMG/M
(restricted) 3300023210|Ga0233412_10044057All Organisms → Viruses → Predicted Viral1806Open in IMG/M
(restricted) 3300024059|Ga0255040_10185362Not Available848Open in IMG/M
(restricted) 3300024062|Ga0255039_10195005All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157844Open in IMG/M
3300024346|Ga0244775_11279496All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157568Open in IMG/M
(restricted) 3300024518|Ga0255048_10037028Not Available2468Open in IMG/M
(restricted) 3300024529|Ga0255044_10477584Not Available527Open in IMG/M
3300025070|Ga0208667_1004500Not Available3942Open in IMG/M
3300025070|Ga0208667_1055264All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157632Open in IMG/M
3300025071|Ga0207896_1010465Not Available1658Open in IMG/M
3300025083|Ga0208791_1009759Not Available2303Open in IMG/M
3300025084|Ga0208298_1000800Not Available12493Open in IMG/M
3300025084|Ga0208298_1010145All Organisms → Viruses → Predicted Viral2340Open in IMG/M
3300025084|Ga0208298_1074089All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157638Open in IMG/M
3300025085|Ga0208792_1003249All Organisms → Viruses → Predicted Viral4497Open in IMG/M
3300025085|Ga0208792_1003664All Organisms → Viruses → Predicted Viral4172Open in IMG/M
3300025086|Ga0208157_1005340All Organisms → Viruses → Predicted Viral4663Open in IMG/M
3300025098|Ga0208434_1009106All Organisms → Viruses → Predicted Viral2836Open in IMG/M
3300025102|Ga0208666_1002470All Organisms → Viruses7690Open in IMG/M
3300025103|Ga0208013_1028512All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU1571608Open in IMG/M
3300025108|Ga0208793_1003445Not Available7809Open in IMG/M
3300025108|Ga0208793_1029962All Organisms → Viruses → Predicted Viral1820Open in IMG/M
3300025112|Ga0209349_1078695Not Available973Open in IMG/M
3300025137|Ga0209336_10157404All Organisms → Viruses596Open in IMG/M
3300025138|Ga0209634_1028512All Organisms → Viruses → Predicted Viral2990Open in IMG/M
3300025138|Ga0209634_1030849All Organisms → Viruses → Predicted Viral2840Open in IMG/M
3300025151|Ga0209645_1104926Not Available912Open in IMG/M
3300025168|Ga0209337_1084359All Organisms → Viruses → Predicted Viral1528Open in IMG/M
3300025168|Ga0209337_1122096All Organisms → Viruses1173Open in IMG/M
3300025168|Ga0209337_1236552Not Available711Open in IMG/M
3300025276|Ga0208814_1116481Not Available647Open in IMG/M
3300025674|Ga0208162_1178956Not Available556Open in IMG/M
3300025769|Ga0208767_1015480All Organisms → Viruses → Predicted Viral4459Open in IMG/M
3300025849|Ga0209603_1319858Not Available535Open in IMG/M
3300027522|Ga0209384_1106585Not Available659Open in IMG/M
3300027752|Ga0209192_10022133All Organisms → Viruses → Predicted Viral3154Open in IMG/M
(restricted) 3300027861|Ga0233415_10258096Not Available815Open in IMG/M
3300029787|Ga0183757_1049698Not Available732Open in IMG/M
3300031519|Ga0307488_10088737All Organisms → Viruses → Predicted Viral2281Open in IMG/M
3300031565|Ga0307379_10136201Not Available2603Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine50.96%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater17.31%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous6.73%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.81%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater2.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.88%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.92%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment1.92%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.92%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.92%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.96%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine0.96%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.96%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.96%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine0.96%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.96%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.96%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300005821Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006164Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006920Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007681Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753EnvironmentalOpen in IMG/M
3300007900Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf. Combined Assembly of MM1PM1EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008220Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300024529 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025084Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300027522Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027752Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300029787Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031565Soil microbial communities from Risofladan, Vaasa, Finland - UN-2EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1002754533300000115MarineMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENELD*
DelMOSum2011_1005275123300000115MarineMITECDAETPHCNWCERPMTTIEHEFCDICDECREENELD*
BBAY92_1002430033300000947Macroalgal SurfaceMMSACDMETPHCNWCERPMTEEDHDFCDICDDCREENELD*
JGI24005J15628_1004794823300001589MarineVRSACDAATPHCEWCERTMTEEEHDFCDICDQCREENEID*
JGI24005J15628_1017160613300001589MarineMKMVRTACDAETPHCEWCERTMTEEDHDFCDICDECREENEID*
Ga0065861_100460553300004448MarineMRSACDEVTPHCEWCERPMTTIEHEFCDICDECREENEID*
Ga0078746_101509843300005821Marine SedimentMNEIRTKCDAETPHCEWCERPMTEEEHDFCDICDECREENELD*
Ga0078893_1109320723300005837Marine Surface WaterMSRTACDAETPHCNWCERPMTEEEHDFCDICDECREENDGYE*
Ga0075441_1015572923300006164MarineMRSACDEETPQCNLCERPMTEEEHDFCDICDECREENDLLL*
Ga0075441_1026188223300006164MarineMTKTELPKCNWCERPMTEEEHDFCDICDECREENDLLL*
Ga0098038_101382583300006735MarineMITVCDAETPHCNWCERPMTEEEHDFCDICDECREENELD*
Ga0098038_101632433300006735MarineMSRTAYDEETPQCPWCERPMTIIEHEFCEICDECREENELD*
Ga0098038_122587623300006735MarineMVQKEQPRSILRIIRLMRSACDEETPHCEWCERPMTEEEHDFCDICDECREENEID*
Ga0098037_102216113300006737MarineVCDAETPHCNWCERPMTEEEHDFCDICDECREENELD*
Ga0098048_1003548113300006752MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN*
Ga0098048_112827543300006752MarineMRSACDEETPHCEFCEKPMTVIEHEFCDICDECREENELN*
Ga0098054_100665413300006789MarineSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN*
Ga0098054_101297993300006789MarineCDEETPHCEFCERPMTVIEHEFCDICDECREENEID*
Ga0098055_100990943300006793MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENEID*
Ga0098055_105824513300006793MarineRLMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN*
Ga0098055_112412933300006793MarineMCIAYEEETPKCEFCEKPMTVIDHEFCDICDECREENELD*
Ga0098055_113719933300006793MarineMRSACDSKTPHCEWCERPMTEEEHDFCDICGECREENEID*
Ga0098055_131043513300006793MarineMRSACDEETPHCNWCERPMTEEEHDFCDICDECREENELD*
Ga0070749_1024415823300006802AqueousMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENELDYE*
Ga0070746_1013548353300006919AqueousSVLRITRLMRSACDKETPHCNWCERPMTEEEHDFCDICDECREENELD*
Ga0070746_1015287613300006919AqueousMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENEL
Ga0070748_100870733300006920AqueousMSRTAYDEETPHCPWCERPMTIIEHEFCEICDECREENELD*
Ga0098060_102799023300006921MarineMRGACDEETPHCEFCERPMTVIEHEFCDICDECREENEID*
Ga0098045_111056113300006922MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENE
Ga0098051_101525353300006924MarineMRSACDEETPHCNWCERPMTEEEHNFCDICDECREENEID*
Ga0098051_108612413300006924MarineMRSACDAETPHCEWCERPMTEEEHDFCDICGECREENEID*
Ga0098050_107690023300006925MarineMSRTACDAETPHCEFCERPMTTIEHEFCDICDECREENEL*
Ga0098050_108796333300006925MarineTRLMRSACDEETPHCEWCERPMTEEEHDFCDICDECREENELD*
Ga0098036_120105023300006929MarineYLKQYEIMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENELD*
Ga0098046_105016543300006990MarineMRSACDSETPHCNWCERPMTEEEHDFCDICDECREENELD*
Ga0070745_102085883300007344AqueousMSRTACDAETPRCEFCERPMTTIEYEFCDICDECREENELDYE*
Ga0102824_107959723300007681EstuarineMSRTACDAETPHCEFCERPMTIIEHEFCDICDECREENEL*
Ga0111031_100182533300007900Marine SedimentMRSACDTATPHCEWCEKTMTEEDHDFCDICDECREENEID*
Ga0105746_129967613300007973Estuary WaterMSRTACDAETPHCEWCERTMTEEDHDFCDICDECREENEID*
Ga0114910_105664013300008220Deep OceanRTACDAETPHCEWCERPMTEEDHDFCDICDECREENELD*
Ga0102812_1025825843300009086EstuarineMRSACDEETPHCNWCERPMTEEEHDFCDICDECREENELDY
Ga0114995_1000894853300009172MarineMRSACDEVTPHCEWCERTMTEEEHDFCDICDECREDNEID*
Ga0115545_105403553300009433Pelagic MarineCDAKTPHCEWCERPMTEEDHDFCDICDECREENDEYK*
Ga0115567_1097042713300009508Pelagic MarineRRIFRIIRLMRSACDAETPHCNWCERPMTEEEHGFCDICDECREENELD*
Ga0098049_104948213300010149MarineITRLMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN*
Ga0133547_1093236143300010883MarineMSRTACDAQTPHCEWCERTMTEEDHDFCDICDECREENEID*
Ga0181377_100944833300017706MarineMRSACDAETLHCNWCERPMTEEEHDFCDICDECREENELD
Ga0181377_105080523300017706MarineMSRTACDAETPHCEFCERPMTVIEHEFCDICDECREENEL
Ga0181377_105300323300017706MarineMSRTLCDAETPHCNWCERPMTEEEHDFCDICDECREENDGYE
Ga0181391_1001343113300017713SeawaterMRSACDEETPHCPWCERPMTIIEHEFCEICDECREENELN
Ga0181404_106478313300017717SeawaterSRTACDAQTPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0181390_1000552283300017719SeawaterMRSACDEETPHCPWCERPMTIIEHEFCEICDECREENELD
Ga0181383_103579213300017720SeawaterMSRTAYDEETPHCPWCERPMTIIEHEFCEICDECREENEL
Ga0181381_101486833300017726SeawaterMSRTACDAETPHCNWCERPMTEEEHDFCDICDECREENELD
Ga0181427_105971923300017745SeawaterMSRTACDAETPHCEWCERPMTEEDHDFCDICDECREENELD
Ga0181389_101610263300017746SeawaterTIMKMVRTECDAQTPHCEFCERPMTTIEHEFCDICDECREENEID
Ga0181392_1006881103300017749SeawaterDEETPHCEFCERPMTVIEHEFCDICDECREENELN
Ga0181382_102987953300017756SeawaterMRSACDEETPHCPWCERPMTIIEHEFCEICDECRE
Ga0181414_109784333300017759SeawaterCDAQTPHCEWCERTMTEEDHDFCDICDECREENEEYE
Ga0181422_114707123300017762SeawaterMRSACDAETPHCNWCERPMTTIEHEFCDICDECREENEID
Ga0181430_112565423300017772SeawaterSKQYETMSRTACDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0181394_103471813300017776SeawaterYEETPHCPWCERPMTIIEHEFCEICDECREENELN
Ga0181395_108630723300017779SeawaterMSRTACDAETPHCEFCERPMTTIEHEFCDICDECREENE
Ga0181424_1014892923300017786SeawaterMRSACDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0211504_101329853300020347MarineMSRTACDAETPHCEFCERPMTTIEHEFCDICDECREENEL
(restricted) Ga0233412_1004405743300023210SeawaterMRSACDTATPHCEWCEKTMTEEDHDFCDICDECREENEID
(restricted) Ga0255040_1018536223300024059SeawaterMRSACDAETPHCEFCERPMTTIEYEFCDICDECREENEID
(restricted) Ga0255039_1019500523300024062SeawaterMRSACDAATPHCEWCERTMTEEEHDFCDICDECREENEID
Ga0244775_1127949623300024346EstuarineMRSACDEETPHCNWCERPMTEEEHDFCDICDECREENELD
(restricted) Ga0255048_1003702883300024518SeawaterMEQEVLKCEFCNKPMTQEDHEFCDICGDCRDENAWDIK
(restricted) Ga0255044_1047758423300024529SeawaterMRSACDAATPHCEFCERPMTTIEHEFCDICDECREDNEID
Ga0208667_100450033300025070MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN
Ga0208667_105526433300025070MarineMCIAYEEETPKCEFCEKPMTVIDHEFCDICDECREENELD
Ga0207896_101046533300025071MarineMSRTVCDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0208791_100975933300025083MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELNGHL
Ga0208298_1000800173300025084MarineMRSACDEETPHCNWCERPMTEEEHDFCDICDECREENEID
Ga0208298_101014563300025084MarineMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENEID
Ga0208298_107408913300025084MarineRLMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN
Ga0208792_100324913300025085MarineCDSKTPHCEWCERPMTEEEHDFCDICGECREENEID
Ga0208792_1003664123300025085MarineMRSACDEETPHCNWCERPMTEEEHDFCDICGECREENEID
Ga0208157_100534093300025086MarineMITVCDAETPHCNWCERPMTEEEHDFCDICDECREENELD
Ga0208434_100910613300025098MarineLCSKQYETMSRTACDAETPHCNWCERPMTEEEHDFCDICDECREENELD
Ga0208666_100247013300025102MarineITVCDAETPHCNWCERPMTEEEHDFCDICDECREENELD
Ga0208013_102851213300025103MarineACDEETPHCEFCERPMTVIEHEFCDICDECREENEID
Ga0208793_1003445113300025108MarineMRSACDSKTPHCEWCERPMTEEEHDFCDICGECREENEID
Ga0208793_102996213300025108MarineILRVTRLMRSACDEETPHCEFCERPMTVIEHEFCDICDECREENELN
Ga0209349_107869523300025112MarineMSRTACDAVTPHCEFCERPMTTIEHEFCDICDECREENEEYE
Ga0209336_1015740423300025137MarineMSRTVCDAETPHCEWCEKTMTEEDHDFCDICDDCREENEID
Ga0209634_102851293300025138MarineMRSACDEVTPHCNWCERPMTTIEHEFCDICDECREENEID
Ga0209634_103084963300025138MarineMRSACDEVTPHCNWCERPMTEEEHDFCDICDECREENDVLL
Ga0209645_110492623300025151MarineMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENELD
Ga0209337_108435953300025168MarineDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0209337_112209623300025168MarineMSRTACDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0209337_123655213300025168MarineTACDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0208814_111648123300025276Deep OceanMRSACDEETPQCNLCERPMTEEEHDFCDICDECREENDLLL
Ga0208162_117895623300025674AqueousMSRTACDAETPHCEFCERPMTTIEYEFCDICDECREENELDYE
Ga0208767_101548093300025769AqueousMSRTAYDEETPHCPWCERPMTIIEHEFCEICDECREENELD
Ga0209603_131985823300025849Pelagic MarineRTECDAKTPHCEWCERPMTEEDHDFCDICDECREENELD
Ga0209384_110658523300027522MarineMTKTELPKCNWCERPMTEEEHDFCDICDECREENDLLL
Ga0209192_1002213343300027752MarineMRSACDEVTPHCEWCERTMTEEEHDFCDICDECREDNEID
(restricted) Ga0233415_1025809623300027861SeawaterMSRTACDAATPHCEFCERPMTTIEHEFCDICDECREENELDYE
Ga0183757_104969823300029787MarineMSRTACDAETPHCEWCERPMTEEDHDFCEICDECREENELD
Ga0307488_1008873713300031519Sackhole BrineVCDAETPHCEWCERTMTEEDHDFCDICDECREENEID
Ga0307379_1013620163300031565SoilMRSACDEETPHCEFCERPMTTIEHEFCDICDECREENELD

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.