Metagenome / Metatranscriptome Family F098122

Basic Information
Family ID	F098122
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	38 residues
Representative Sequence	MATDTLASPATLSRTQTKVFKNFIDGEWVESSTGETFE
Number of Associated Samples	97
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	96.15 %
% of genes from short scaffolds (< 2000 bps)	85.58 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Most Common Taxonomy
Group	Bacteria (79.808 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (11.539 % of family members)
Environment Ontology (ENVO)	Unclassified (26.923 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.115 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.55% β-sheet: 21.21% Coil/Unstructured: 74.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01432	Peptidase_M3	6.73
PF04773	FecR	5.77
PF00857	Isochorismatase	5.77
PF00557	Peptidase_M24	2.88
PF00005	ABC_tran	2.88
PF12704	MacB_PCD	2.88
PF05960	DUF885	2.88
PF13231	PMT_2	2.88
PF05016	ParE_toxin	1.92
PF13411	MerR_1	1.92
PF00072	Response_reg	0.96
PF02604	PhdYeFM_antitox	0.96
PF05368	NmrA	0.96
PF11746	DUF3303	0.96
PF03551	PadR	0.96
PF03279	Lip_A_acyltrans	0.96
PF13518	HTH_28	0.96
PF14559	TPR_19	0.96
PF12779	WXXGXW	0.96
PF01578	Cytochrom_C_asm	0.96
PF05195	AMP_N	0.96
PF05872	HerA_C	0.96
PF13649	Methyltransf_25	0.96
PF13290	CHB_HEX_C_1	0.96
PF04085	MreC	0.96
PF07690	MFS_1	0.96
PF00171	Aldedh	0.96
PF11185	DUF2971	0.96
PF01098	FTSW_RODA_SPOVE	0.96
PF04185	Phosphoesterase	0.96
PF01676	Metalloenzyme	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	6.73
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	6.73
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	5.77
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	5.77
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	2.88
COG0006	Xaa-Pro aminopeptidase	Amino acid transport and metabolism [E]	0.96
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.96
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.96
COG0772	Peptodoglycan polymerase FtsW/RodA/SpoVE	Cell cycle control, cell division, chromosome partitioning [D]	0.96
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.96
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.96
COG1792	Cell shape-determining protein MreC	Cell cycle control, cell division, chromosome partitioning [D]	0.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.96
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.96
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.96
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.96
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.96
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.77 %
Unclassified	root	N/A	19.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.77 %
Unclassified	root	N/A	19.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.81 %
Unclassified	root	N/A	19.23 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	54.81 %
Unclassified	root	N/A	19.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.96 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	14.42 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	12.50 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.96 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.54 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.96 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.96 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.96 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.54 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %
Bacteroidetes Order II. Incertae sedis	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis	0.96 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	6.73 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.96 %
Methanoregulaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae	0.96 %
Rhodothermaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
unclassified Methanoregulaceae	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae	0.96 %
Rhodothermus	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus	0.96 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	19.23 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	14.42 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.88 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.92 %
Methanoregulaceae archaeon PtaB.Bin056	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaB.Bin056	0.96 %
Rhodothermus marinus	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus marinus	0.96 %
Terracidiphilus	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	0.96 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.96 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000579\|AP72_2010_repI_A01DRAFT_1005351	All Organisms → cellular organisms → Bacteria	2303	Open in IMG/M
3300000955\|JGI1027J12803_100904258	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300005468\|Ga0070707_100404398	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1325	Open in IMG/M
3300005538\|Ga0070731_11123914	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300005542\|Ga0070732_10859981	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	554	Open in IMG/M
3300005557\|Ga0066704_10110301	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1815	Open in IMG/M
3300005559\|Ga0066700_11129929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	512	Open in IMG/M
3300005575\|Ga0066702_10327110	All Organisms → cellular organisms → Bacteria → Acidobacteria	933	Open in IMG/M
3300005614\|Ga0068856_102134353	All Organisms → cellular organisms → Bacteria → Acidobacteria	570	Open in IMG/M
3300005712\|Ga0070764_10141604	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300005712\|Ga0070764_10201373	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1117	Open in IMG/M
3300005764\|Ga0066903_106802186	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005841\|Ga0068863_100048530	All Organisms → cellular organisms → Bacteria	4026	Open in IMG/M
3300005894\|Ga0075270_1002114	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2077	Open in IMG/M
3300005895\|Ga0075277_1077734	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005921\|Ga0070766_10217888	All Organisms → cellular organisms → Bacteria → Acidobacteria	1200	Open in IMG/M
3300005995\|Ga0066790_10194033	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300006028\|Ga0070717_11135466	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300006034\|Ga0066656_10475919	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300006163\|Ga0070715_10390872	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae → unclassified Methanoregulaceae → Methanoregulaceae archaeon PtaB.Bin056	770	Open in IMG/M
3300006175\|Ga0070712_101933906	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus marinus	516	Open in IMG/M
3300006176\|Ga0070765_100456506	All Organisms → cellular organisms → Bacteria	1198	Open in IMG/M
3300006358\|Ga0068871_100622063	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300006854\|Ga0075425_100002756	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17628	Open in IMG/M
3300006914\|Ga0075436_101185802	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300009089\|Ga0099828_10176634	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300009759\|Ga0116101_1204921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300010343\|Ga0074044_10974669	Not Available	555	Open in IMG/M
3300010366\|Ga0126379_11471768	Not Available	787	Open in IMG/M
3300010376\|Ga0126381_102438903	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300010398\|Ga0126383_11176584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300010937\|Ga0137776_1657367	All Organisms → cellular organisms → Bacteria → Acidobacteria	904	Open in IMG/M
3300011270\|Ga0137391_11446119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	533	Open in IMG/M
3300012202\|Ga0137363_10778830	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300012362\|Ga0137361_10760036	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300012917\|Ga0137395_11209664	Not Available	528	Open in IMG/M
3300012925\|Ga0137419_10510406	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	955	Open in IMG/M
3300012925\|Ga0137419_10717399	Not Available	812	Open in IMG/M
3300013100\|Ga0157373_10170787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Terracidiphilus	1530	Open in IMG/M
3300013307\|Ga0157372_10255657	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2034	Open in IMG/M
3300014495\|Ga0182015_10241215	All Organisms → cellular organisms → Bacteria → Acidobacteria	1196	Open in IMG/M
3300015371\|Ga0132258_10803565	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2371	Open in IMG/M
3300015371\|Ga0132258_10954743	All Organisms → cellular organisms → Bacteria	2166	Open in IMG/M
3300017966\|Ga0187776_10870946	All Organisms → cellular organisms → Bacteria → Acidobacteria	652	Open in IMG/M
3300017975\|Ga0187782_11408176	Not Available	548	Open in IMG/M
3300018034\|Ga0187863_10620790	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300018038\|Ga0187855_10619780	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300018042\|Ga0187871_10310217	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300018044\|Ga0187890_10214252	All Organisms → cellular organisms → Bacteria → Acidobacteria	1089	Open in IMG/M
3300018085\|Ga0187772_10793618	Not Available	683	Open in IMG/M
3300019786\|Ga0182025_1229255	All Organisms → cellular organisms → Bacteria → Acidobacteria	1220	Open in IMG/M
3300020034\|Ga0193753_10069558	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300020582\|Ga0210395_10460550	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300020583\|Ga0210401_10845471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300021178\|Ga0210408_10471249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300021180\|Ga0210396_10384007	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300021404\|Ga0210389_11501227	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300021405\|Ga0210387_10493849	All Organisms → cellular organisms → Bacteria → Acidobacteria	1088	Open in IMG/M
3300021405\|Ga0210387_11022922	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300021407\|Ga0210383_11664743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300021474\|Ga0210390_10037949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3936	Open in IMG/M
3300021474\|Ga0210390_10126941	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2141	Open in IMG/M
3300021475\|Ga0210392_10183263	All Organisms → cellular organisms → Bacteria → Acidobacteria	1452	Open in IMG/M
3300021560\|Ga0126371_11115481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300021858\|Ga0213852_1041115	Not Available	640	Open in IMG/M
3300021861\|Ga0213853_10103773	Not Available	1222	Open in IMG/M
3300023030\|Ga0224561_1023362	Not Available	543	Open in IMG/M
3300025612\|Ga0208691_1048394	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300025903\|Ga0207680_11127996	Not Available	560	Open in IMG/M
3300025904\|Ga0207647_10071634	Not Available	2091	Open in IMG/M
3300025928\|Ga0207700_10787595	All Organisms → cellular organisms → Bacteria → Acidobacteria	850	Open in IMG/M
3300025929\|Ga0207664_10838666	All Organisms → cellular organisms → Bacteria → Acidobacteria	826	Open in IMG/M
3300027559\|Ga0209222_1077018	Not Available	643	Open in IMG/M
3300027701\|Ga0209447_10024372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1694	Open in IMG/M
3300027767\|Ga0209655_10203772	Not Available	650	Open in IMG/M
3300027842\|Ga0209580_10255516	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300027862\|Ga0209701_10582311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	596	Open in IMG/M
3300027867\|Ga0209167_10162744	All Organisms → cellular organisms → Bacteria → Acidobacteria	1176	Open in IMG/M
3300027874\|Ga0209465_10059498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1839	Open in IMG/M
3300027884\|Ga0209275_10060821	All Organisms → cellular organisms → Bacteria → Acidobacteria	1845	Open in IMG/M
3300027895\|Ga0209624_10723877	Not Available	656	Open in IMG/M
3300028807\|Ga0307305_10457134	Not Available	574	Open in IMG/M
3300028906\|Ga0308309_10990235	Not Available	729	Open in IMG/M
3300029943\|Ga0311340_11364765	Not Available	562	Open in IMG/M
3300029951\|Ga0311371_10377387	All Organisms → cellular organisms → Bacteria → Proteobacteria	1944	Open in IMG/M
3300029955\|Ga0311342_10505110	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300030057\|Ga0302176_10289197	Not Available	658	Open in IMG/M
3300030518\|Ga0302275_10113135	All Organisms → cellular organisms → Bacteria	1782	Open in IMG/M
3300030617\|Ga0311356_10197414	All Organisms → cellular organisms → Bacteria → Acidobacteria	2058	Open in IMG/M
3300030618\|Ga0311354_10072565	All Organisms → cellular organisms → Bacteria → Acidobacteria	3918	Open in IMG/M
3300030991\|Ga0073994_12298850	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300031231\|Ga0170824_125880827	Not Available	590	Open in IMG/M
3300031231\|Ga0170824_126658655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300031234\|Ga0302325_12687076	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	587	Open in IMG/M
3300031718\|Ga0307474_10168827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	1657	Open in IMG/M
3300031820\|Ga0307473_10626654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300032174\|Ga0307470_10961254	All Organisms → cellular organisms → Bacteria → Acidobacteria	676	Open in IMG/M
3300032180\|Ga0307471_101636095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300032180\|Ga0307471_102752393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
3300032770\|Ga0335085_10897746	All Organisms → cellular organisms → Bacteria → Acidobacteria	966	Open in IMG/M
3300032783\|Ga0335079_10002937	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	19643	Open in IMG/M
3300032897\|Ga0335071_10039293	Not Available	4683	Open in IMG/M
3300032955\|Ga0335076_10071210	All Organisms → cellular organisms → Bacteria → Acidobacteria	3424	Open in IMG/M
3300033158\|Ga0335077_10998444	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.42%
Host-Associated	Host-Associated	10.58%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.85%
Aquatic	Environmental → Aquatic	10.58%
Plants	Host-Associated → Plants	10.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.15%
Freshwater	Environmental → Aquatic → Freshwater	9.62%
Peat	Environmental → Terrestrial → Peat	7.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.81%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.31%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.27%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.69%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.77%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.81%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.88%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.88%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.96%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005894	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203	Environmental	Open in IMG/M
3300005895	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_101	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098122

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A01DRAFT_10053513	3300000579	Forest Soil	MATDTLATPAGLSTSQTRVFKNFIDGQWVDSVTGDTFENR
JGI1027J12803_1009042581	3300000955	Soil	MATDTVTSPEMMASGTTKVLKNFIDGEWVASSTGETFEDR
Ga0070707_1004043981	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MATETMTGPTILGSTTKTRVFKNFIDGEWVESSTGETFENCN
Ga0070731_111239142	3300005538	Surface Soil	MATDTLASPATLGYNPTKVFKNFIDGEWVESSTGETFE
Ga0070732_108599812	3300005542	Surface Soil	MATDTLASPASLSESQTRVFNNYIDGEWVESSTGATFEN
Ga0066704_101103013	3300005557	Soil	MATETMTGPTILGSTTKTRVFKNFIDGEWVESSTGETF
Ga0066700_111299292	3300005559	Soil	MATETMTGPTILGSTTKTKVFKNFIDGEWVESSTGETFE
Ga0066702_103271103	3300005575	Soil	MATDTLASPASLSESQTRVFKNYIDGEWVESSTGE
Ga0068856_1021343531	3300005614	Corn Rhizosphere	MATDTLATPASLSESQTRVFKNYIDGEWVESSTGET
Ga0070764_101416042	3300005712	Soil	MATDTLASPTILGNSQPTKVYKNFIDGEWVESSSGQ
Ga0070764_102013731	3300005712	Soil	MATDTLATPATLSDAKTRVFKNFIDGEWVESSTGETF
Ga0066903_1068021861	3300005764	Tropical Forest Soil	MATDTLASPPSALSYGPTRVFKNFIDGEWVDDSTGETFEN
Ga0068863_1000485301	3300005841	Switchgrass Rhizosphere	MATTTLTDPPAFSSASKTKVFKNFINGEWAESSSGQTFENISPAD
Ga0075270_10021142	3300005894	Rice Paddy Soil	MATDTLAASIGTGSSARVYKNFIDGEWVESRTGETF*
Ga0075277_10777342	3300005895	Rice Paddy Soil	MATDTLATPASLSASQTRVFKNYIDGEWVESSTGE
Ga0070766_102178883	3300005921	Soil	MATDTLASPATLSYGKTKVFKNFIDGEWIEASTGE
Ga0066790_101940331	3300005995	Soil	MATDTLATPAITGSGKTKVYKNLIDGEWVESKNGET
Ga0070717_111354662	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MATDTLATPASLSESQTRVFKNYIDGEWVESSTGE
Ga0066656_104759192	3300006034	Soil	MATETMTGPTILGSATKTKVFKNFIDGEWVESSTGETFENC
Ga0070715_103908722	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MATDTVTSAPMLGSSTPTRVFKNFIDGEWVESRTGETFED
Ga0070712_1019339061	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MATDTVTSPELMASGNTKVLKNFIDGEWVASSTGETFEDRNP
Ga0070765_1004565063	3300006176	Soil	MATDTLTSPATLSYGKTQVFKNFIDGEWVEASTGETFENR
Ga0068871_1006220631	3300006358	Miscanthus Rhizosphere	MATDTMAAATISGGTGTKVYKNLIDGEWVESSTGE
Ga0075425_10000275613	3300006854	Populus Rhizosphere	MATDTLTASIGTSSSARVYKNFIDGEWVESRTGDMFEDRNP
Ga0075436_1011858023	3300006914	Populus Rhizosphere	MATDTLTSPPALGSSTAPKVYKNFIDGEWVESSTGE
Ga0099828_101766341	3300009089	Vadose Zone Soil	MATDTLAAPAIIGSRTTTKVYKNFMDGEWVESSTGET
Ga0116101_12049212	3300009759	Peatland	MATDTLASPAHLSHTSTKVLKNFIDGEWVESSTGETF
Ga0074044_109746692	3300010343	Bog Forest Soil	MATDTLASPATLSHKPTKIMKNFIDGEWVDSSTGE
Ga0126379_114717682	3300010366	Tropical Forest Soil	MATETVAHPAITSTGNTRVFKNFIDGEWVASTTGE
Ga0126381_1024389032	3300010376	Tropical Forest Soil	MATDTLATPAGLSDSQARVFKNFIDGEWVDSSTGDTFE
Ga0126383_111765841	3300010398	Tropical Forest Soil	MATETVTSPELMASGKTRVFQNFIDGEWVASSTGETFEN
Ga0137776_16573671	3300010937	Sediment	MATDTVTSPATLSYGTTKVFKNFIDGEWVESSTGET
Ga0137391_114461192	3300011270	Vadose Zone Soil	MATDTLATPAIIGSRTTTKVYKNFIDGEWVESSTGETFE
Ga0137363_107788302	3300012202	Vadose Zone Soil	MATDTMTSPAVMSSGNTRVYKNYIAGEWVESSTGETF
Ga0137361_107600361	3300012362	Vadose Zone Soil	MATDTVTSPAVLSSGNTKVYKNYIAGEWVESSTGETF
Ga0137395_112096641	3300012917	Vadose Zone Soil	MATHTLATPPVIGSSNPTKVYLNFIDGEWVESSTGETFEN
Ga0137419_105104061	3300012925	Vadose Zone Soil	MATDILTGPTILGSTTRTKIFKNFIDGEWVESSTGETFEN
Ga0137419_107173992	3300012925	Vadose Zone Soil	MATETLPTPATIGNTNPTKVYKNFIDGEWVESSTGETFE
Ga0157373_101707873	3300013100	Corn Rhizosphere	MATDTLTSPPALGSSTAPKVYKNFIDGEWVESSTGETFE
Ga0157372_102556573	3300013307	Corn Rhizosphere	MSMATDTLTASIGTGSSARVYKNFIDGEWVQSRTGEMFED
Ga0182015_102412151	3300014495	Palsa	MATDTLTSPPVLGTGSKTKVYRNFIDGDWVESSTG
Ga0132258_108035651	3300015371	Arabidopsis Rhizosphere	MATDTLASPATLNYGQTKVFKNLIDGEWVDASTGATF
Ga0132258_109547434	3300015371	Arabidopsis Rhizosphere	MATDILAAPAGLSSTQTRVFKNFIDGEWVEASTGE
Ga0187776_108709462	3300017966	Tropical Peatland	MATDTLASPATIGSSTKAKVYKNFIDGEWVEASTGETFE
Ga0187782_114081761	3300017975	Tropical Peatland	VATDTFATPAQLSTSQTRVFKNFIDGEWVEASTGETFENR
Ga0187863_106207902	3300018034	Peatland	MATDTLAAPATLSSSQAKVYKNFIDGEWVESSTGETF
Ga0187855_106197801	3300018038	Peatland	MAIETLASPTTLGVSNPTRIIKNFIDGEWVESSTGETF
Ga0187871_103102172	3300018042	Peatland	MATDTLPTPATLSHQPTKIFKNFIDGEWVDSSTGETFE
Ga0187890_102142521	3300018044	Peatland	MATDTLAAPATLSSSQAKVYKNFIDGEWVESSTGETFE
Ga0187772_107936181	3300018085	Tropical Peatland	MATDTLATPAAQNYGGTKVFKNFIDGEWVEASTGETFEN
Ga0182025_12292552	3300019786	Permafrost	MATDTVITPATPAYGKTKVFKNFIDGEWVEASHGGDI
Ga0193753_100695581	3300020034	Soil	MATDTLATPAIAGSGNTKVYKNFIDGEWVDSESGETFEN
Ga0210395_104605501	3300020582	Soil	MATDTLAAPAILSDSKTKVFKNFIDGEWVESSTGQTFEN
Ga0210401_108454712	3300020583	Soil	MATETVGSPAIMASGNTKVYKNFINGEWVESSTGETF
Ga0210408_104712491	3300021178	Soil	MATETVGSPAIMASGNTKVYKNFINGEWVESSTGETFEDR
Ga0210396_103840071	3300021180	Soil	MATDTLATPATLSDAKTRVFKNFIDGEWVESSTGETFENR
Ga0210389_115012272	3300021404	Soil	MATDTLASPTILGNSQPTKVYKNFIDGEWVKSSSGQTFED
Ga0210387_104938491	3300021405	Soil	MATDTLTSPAALSYGKTKVFKNFIDGEWVEASTGETFEN
Ga0210387_110229221	3300021405	Soil	MATNTLPTPAAVNYGGTKVFKNFIDGEWVESSTGQT
Ga0210383_116647432	3300021407	Soil	MATDTLAAPATLSNSQTKVFKNFIDGEWVESSTGE
Ga0210390_100379491	3300021474	Soil	MATDTVAKVAVASAGNTKIYKNFIDGEWVESTTGETF
Ga0210390_101269413	3300021474	Soil	MATDTLTTPPTLSYGKTKVFKNFIDGEWVEASTGQTFEN
Ga0210392_101832633	3300021475	Soil	MATDTLTSPVALNYGKTKVFKNFIDGEWVESSTGETF
Ga0126371_111154812	3300021560	Tropical Forest Soil	MATDTFRTPAQLSESQVRVFKNFIDGEWVEASTGETF
Ga0213852_10411152	3300021858	Watersheds	MATDTLATPADLSSTQARVFKNFIDGEWVESSTGE
Ga0213853_101037731	3300021861	Watersheds	MATDTLATPATLSNSQTRVFKNFIDGEWVESSTGETF
Ga0224561_10233622	3300023030	Soil	MATDTLTSPAILGYNPTKVTKNFIDGEWVESVTGETFEDRNP
Ga0208691_10483941	3300025612	Peatland	MATDTLTSPVTLSYGKTKVFKNFIDGEWVEASTGE
Ga0207680_111279962	3300025903	Switchgrass Rhizosphere	MATDTMAAATISGGTGTKVYKNLIDGEWVESSTGETFE
Ga0207647_100716342	3300025904	Corn Rhizosphere	MATDTMAAATISGGTGTKVYKNLIDGEWVESSTGETFEN
Ga0207700_107875951	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MATDTLATPASLSESQTRVFKNYIDGEWVESSTGETFENRN
Ga0207664_108386662	3300025929	Agricultural Soil	MATETFATPASLSESQARVFKNFIDGDWVDSSTGET
Ga0209222_10770181	3300027559	Forest Soil	MATDTLASPATLGYNPTKVYKNFIDGEWVESTTGETF
Ga0209447_100243722	3300027701	Bog Forest Soil	MATKTLASPAIVGYNPTKVFKNFIDGEWVESSTGETFEDR
Ga0209655_102037721	3300027767	Bog Forest Soil	MATDTLTSPAALSHTPTKILKNFIDGEWVESSTGETFEDR
Ga0209580_102555162	3300027842	Surface Soil	MATETMTTPPPALGYGQTRVFKNFIDGEWVESSTGLTFENRN
Ga0209701_105823111	3300027862	Vadose Zone Soil	MATDTLATPAIIGSRTTTKVYKNFIDGEWVESSTGETFENL
Ga0209167_101627441	3300027867	Surface Soil	MATDTLATPATLSDAKTRVFKNFIDGEWVEFSTGETFE
Ga0209465_100594983	3300027874	Tropical Forest Soil	MATDTLATPAGLSTSQTRVFKNFIDGQWVDSVTGDTF
Ga0209275_100608212	3300027884	Soil	MATDTLAAPATLSNSQTKVFKNFIDGEWVESSTGETFE
Ga0209624_107238771	3300027895	Forest Soil	MATDTFIAPSALSPTQTKVFKNFIDGEWVASSTGETFEN
Ga0307305_104571342	3300028807	Soil	MATDTLASPAVIGSNTKTKTYKNFIDGEWVESSTGQT
Ga0308309_109902352	3300028906	Soil	MATDTLTSPAMLGTSTAPKVYKNFIDGEWVESSTGESF
Ga0311340_113647651	3300029943	Palsa	MATDTLASPAILGYSPTKVFKNFIDGEWVEASTRETF
Ga0311371_103773871	3300029951	Palsa	MATDTLASPATLSHTPTKVLKNFIDGEWVESSTGETF
Ga0311342_105051102	3300029955	Bog	MATLTSPATLGSTHPTKVYKNFIDGEWVESSTGETF
Ga0302176_102891971	3300030057	Palsa	MATDTFTAPTPATLSDTQTKVFKNFIDGEWVDSVTGETFEN
Ga0302275_101131354	3300030518	Bog	MAADTLASPATLGYNKTKVLKNFVDGEWVESSTGET
Ga0311356_101974141	3300030617	Palsa	MATDTLATPAAINYGGTKVFKNFIDGEWVESSTGETFENR
Ga0311354_100725654	3300030618	Palsa	MATDTFTAPTPATLSDTQTKVFKNFIDGEWVDSVTGET
Ga0073994_122988501	3300030991	Soil	MATHTLATPPVIGSSSPTKVYQNFIDGEWVESSTGET
Ga0170824_1258808272	3300031231	Forest Soil	MATDTLASPATLSHSQTKVFKNFIDGEWVESTTGETFENR
Ga0170824_1266586552	3300031231	Forest Soil	MATDTLSSPVLDGSSSHPIVYKNFIDGEWVESSTGQTF
Ga0302325_126870761	3300031234	Palsa	MATDTLAAPATLSNSQAKVYKNFIDGEWVESSTGETFE
Ga0307474_101688271	3300031718	Hardwood Forest Soil	MATDTLASPATLSNTQTKVFKNFIDGEWVESSTGE
Ga0307473_106266542	3300031820	Hardwood Forest Soil	MATDTLAGPAMLGTSTKARVYKNFIDGEWVESSTGETFENR
Ga0307470_109612542	3300032174	Hardwood Forest Soil	MATDAMPTPATLSDTQARVGENFIDGEWVDSRTPMLFSVN
Ga0307471_1016360952	3300032180	Hardwood Forest Soil	MATDAMPTPATLSDTQARVGENFIDGEWMDSRTPMLFSVN
Ga0307471_1027523932	3300032180	Hardwood Forest Soil	MATDTLASPATLSRTQTKVFKNFIDGEWVESSTGETFE
Ga0335085_108977461	3300032770	Soil	MATDTLASPATLNYGKTKVFKNFIDGEWVEASTGETF
Ga0335079_1000293715	3300032783	Soil	MATDTLASPAMLGSSSKSKVYKNFIDGEWVEASTG
Ga0335071_100392931	3300032897	Soil	MATDTLATPATLSTSQTRVFKNFINGEWVESSTGDTFEN
Ga0335076_100712101	3300032955	Soil	MATDTLAAPATLSSGNTKVFKNFIDGEWVEASTGET
Ga0335077_109984441	3300033158	Soil	MATDTLATPAKLSNSQTRVFKNFIDGEWVESSTGQT

Hidden Markov Model


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