NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098139

Metagenome / Metatranscriptome Family F098139

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098139
Family Type Metagenome / Metatranscriptome
Number of Sequences 104
Average Sequence Length 40 residues
Representative Sequence MKLALIKFLSAATIVCAADVPITQDELVRRTQELYDA
Number of Associated Samples 90
Number of Associated Scaffolds 104

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.77 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 93.27 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.192 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.231 % of family members)
Environment Ontology (ENVO) Unclassified
(26.923 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(63.462 % of family members)


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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54
1N57_01574980
2INPhiseqgaiiFebDRAFT_1004463323
3JGI1027J12803_1016900022
4JGI25381J37097_10732292
5Ga0062589_1015928691
6Ga0062590_1025043202
7Ga0066672_102401321
8Ga0066680_100849874
9Ga0066388_1063191401
10Ga0066686_102871602
11Ga0070707_1019798652
12Ga0066697_106918782
13Ga0066701_105363761
14Ga0066695_102036944
15Ga0066707_105361251
16Ga0066707_105430952
17Ga0066707_107040131
18Ga0066707_108972542
19Ga0066702_100852411
20Ga0066706_103902051
21Ga0066903_1005358341
22Ga0070717_100804826
23Ga0070715_102120441
24Ga0066653_102650481
25Ga0075428_1008017473
26Ga0075435_1012810421
27Ga0105240_125664292
28Ga0105243_122722052
29Ga0134084_102135902
30Ga0134065_100955231
31Ga0134080_103254681
32Ga0126376_113803852
33Ga0126376_115769662
34Ga0126372_117517741
35Ga0134066_102246211
36Ga0126379_104578301
37Ga0134128_106013963
38Ga0126381_1000822641
39Ga0126381_1011208891
40Ga0126381_1014622661
41Ga0126381_1020322771
42Ga0126383_130788382
43Ga0137463_11658422
44Ga0137364_108585092
45Ga0137364_111795021
46Ga0137383_103155214
47Ga0137363_117532531
48Ga0137380_102260291
49Ga0137381_101801301
50Ga0137376_100573861
51Ga0137376_114686771
52Ga0137378_104684993
53Ga0137387_109185902
54Ga0137386_110762532
55Ga0137366_102835463
56Ga0137384_109369921
57Ga0157285_101606501
58Ga0157301_102536121
59Ga0137359_101880281
60Ga0137419_109194621
61Ga0137416_114814811
62Ga0137404_115850451
63Ga0164303_101526531
64Ga0164303_106152401
65Ga0164301_102138893
66Ga0164301_105210391
67Ga0126369_120498572
68Ga0164308_103424211
69Ga0164308_110711573
70Ga0164304_114348511
71Ga0164305_103797233
72Ga0134075_101802362
73Ga0134075_103324431
74Ga0134079_103812452
75Ga0173480_100508272
76Ga0134085_100344724
77Ga0184635_101511032
78Ga0066669_118445462
79Ga0173481_103137022
80Ga0173482_100458491
81Ga0193712_10627181
82Ga0193747_10884361
83Ga0210406_104651811
84Ga0222622_106365971
85Ga0207693_106551332
86Ga0207706_100603633
87Ga0207669_106983211
88Ga0207702_100324785
89Ga0209237_11038551
90Ga0209239_11029754
91Ga0209375_12362302
92Ga0209156_102552421
93Ga0209325_10219711
94Ga0209625_11045761
95Ga0207428_100677801
96Ga0307313_100895181
97Ga0307284_102783522
98Ga0307305_103910391
99Ga0307286_101068851
100Ga0307308_103364341
101Ga0075400_117280702
102Ga0170834_1035154453
103Ga0170824_1045419432
104Ga0170824_1244585702
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 47.69%    β-sheet: 0.00%    Coil/Unstructured: 52.31%
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Variant

5101520253035MKLALIKFLSAATIVCAADVPITQDELVRRTQELYDASequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)


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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
95.2%4.8%
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Associated Scaffolds




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Environmental Properties

Associated Habitat Types

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Soil
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Soil
Grasslands Soil
Grass Soil
Soil
Forest Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
19.2%16.3%9.6%7.7%16.3%3.8%2.9%3.8%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N57_015749802170459013Grass SoilMKLALIKFLSAATIVCAADIPITQDELVRRTQELY
INPhiseqgaiiFebDRAFT_10044633233300000364SoilMFRVMKLVLVIIFATTLAXAADXPXTXDXLVRXTXXLYXAVA
JGI1027J12803_10169000223300000955SoilMKLAFVASFFAATLACAMDVPITQDELVRRTQELY
JGI25381J37097_107322923300002557Grasslands SoilMKLLALIAFTSAATFACAVNIPLTQEELVRRTQELYDXVAXAN
Ga0062589_10159286913300004156SoilMKQLTLIKFLSAATLVCAADVPITQDELVRRTQELYDALV
Ga0062590_10250432023300004157SoilMKQLALIKFLFVATVVCAADVPITQDELVRRTQELYDSLVSGDQ
Ga0066672_1024013213300005167SoilMFSVMKLALVIIFATTFVHAADVPITQDEFIRRTQELYDAIVPGNQ
Ga0066680_1008498743300005174SoilMFSVMKLALVIIFTTTLAYAGDVPITQDELVHRTQELYDAIVPGNQ
Ga0066388_10631914013300005332Tropical Forest SoilMKQLALIKFLFAATIVCAADVPITQDELVRRTQELYDAVVPG
Ga0066686_1028716023300005446SoilMKLPLVTFFFAVTIACATDVPITQDELVHRTQELYDAIVPGNQA
Ga0070707_10197986523300005468Corn, Switchgrass And Miscanthus RhizosphereMKLAFTTFFLAVTITCAADVPITQDELVRRTQELYDAVVPG
Ga0066697_1069187823300005540SoilMFSVMKLVLVIFATTLAHTADAPIAQDELVRRTQELYDA
Ga0066701_1053637613300005552SoilMKLALVIIFTTTLAYTGDVPITQDELVRRTQELYDAIV
Ga0066695_1020369443300005553SoilMKLALVTFFSAVTLVSAADVPITQNELVRRTQELYDAI
Ga0066707_1053612513300005556SoilMKLALVIIFTTTLAYTGDVPITQDELVRRTQELYDAIVPG
Ga0066707_1054309523300005556SoilMKLALITFLSAVTLACAADVPITQDELVRRTQELY
Ga0066707_1070401313300005556SoilMKVALVTLCFGVTLACAEDVPITQDELVGRTQELY
Ga0066707_1089725423300005556SoilMKLALIKFLSVATIVCAADLPITQDELVRRTQELYDAVVPG
Ga0066702_1008524113300005575SoilMKFALTTFLFAVALARAADVPITQEELVRRTQELYDAIVPGN
Ga0066706_1039020513300005598SoilMFSVMKLVLVIFATTLAHTADAPIAQDELVRRTQELYDAIVPGNQ
Ga0066903_10053583413300005764Tropical Forest SoilMILVKQIAVIKFLSAAIIVCAADVPITQDDLVRRTQELYDAV
Ga0070717_1008048263300006028Corn, Switchgrass And Miscanthus RhizosphereMILMKQLVLIKFLSAATIVCAADVPITQDELVRRTQELYDA
Ga0070715_1021204413300006163Corn, Switchgrass And Miscanthus RhizosphereMKQLVLIKFLSAATIVCAADVPIAQDELVRRTQELYDALVPGN
Ga0066653_1026504813300006791SoilMKLALVTFFSTVTLACAADVPITQDELVRRTQELYDAIV
Ga0075428_10080174733300006844Populus RhizosphereMKLALISFLSAATVVCAADVPITQDELARRTQELY
Ga0075435_10128104213300007076Populus RhizosphereMKQLALIKFLSAATIVYAADVAITQDELVRRTQELYDAV
Ga0105240_1256642923300009093Corn RhizosphereMKQLMLIKFLSAATLVCAADVPITQDELVRRTQELYDALVSGNQ
Ga0105243_1227220523300009148Miscanthus RhizosphereMILMKRLMLIGFLSFATVVCAADVPITQDELIRRTQEL
Ga0134084_1021359023300010322Grasslands SoilMKLALIKFLSAATIVCAADVPITQDELVRRTQELYDAVVP
Ga0134065_1009552313300010326Grasslands SoilMKLLPVIIFATALAHAADAPITQDELVRRTQELYDA
Ga0134080_1032546813300010333Grasslands SoilMKQFALIKFLSAVTIVCAADVPITQDELVRRTQELYDS
Ga0126376_1138038523300010359Tropical Forest SoilMKRLMLIGFLSLATIVCAADAPITQNELIRRTQELYDSLVSGN
Ga0126376_1157696623300010359Tropical Forest SoilMKLALIQFLSAATIVCAADVPITQEELVRRTQELYDAVVPG
Ga0126372_1175177413300010360Tropical Forest SoilMKLQLVIFFSAVTIAYPTDVPITPDELVRRTQELYDAIVP
Ga0134066_1022462113300010364Grasslands SoilMKLALVTFFSAVTLACAADVPITQDELVRRTQELYDALVPGN
Ga0126379_1045783013300010366Tropical Forest SoilMKQLALIKFLCAATVVCAADVPITQDELVRRTQELYYSLVSGN
Ga0134128_1060139633300010373Terrestrial SoilMKQLALIKFLAAATIVCAADVPITQDELVRRTQELYDSLVSGD
Ga0126381_10008226413300010376Tropical Forest SoilMIAMKRFMLIGFLSLATVVCAEEVPISQDELIRRTQELYDS
Ga0126381_10112088913300010376Tropical Forest SoilMKQLALIAFTSVTTFACAANTAITEEELVRRTQELYDAVAS
Ga0126381_10146226613300010376Tropical Forest SoilMKHTLIIFLFAATIVCAADVPITQDELVRRTQELYD
Ga0126381_10203227713300010376Tropical Forest SoilMKRFMLIGFLSLATVVCAEEVPISQDELIRRTQELYDS
Ga0126383_1307883823300010398Tropical Forest SoilMKRLMLSGFLSLATVVCAADVAITQDELVRRTQELY
Ga0137463_116584223300011444SoilMKQLALIKFLSAATIVCAADVPIMQDELVRRTQELYDAV
Ga0137364_1085850923300012198Vadose Zone SoilMKLALVTFFFTATIACAAEVPITQDELVRRTQELYDALVPGNQ
Ga0137364_1117950213300012198Vadose Zone SoilMKLALVIIFTTTLAYAADVPITQDELVRRTQELYDAV
Ga0137383_1031552143300012199Vadose Zone SoilMKQLAFIKFLSAATIVCAADVPIMQDELVRRTQELYDAIVSG
Ga0137363_1175325313300012202Vadose Zone SoilMKQLAFINFLSAATIVCAADAPIAQDDLVRRTQELYDAV
Ga0137380_1022602913300012206Vadose Zone SoilMKLLFVIIFATKLTHAAAADLPITQQELVRRTQEL
Ga0137381_1018013013300012207Vadose Zone SoilMKQLALIKFLSAATIVCAADVPITQDELVRRTQELYDAVVP
Ga0137376_1005738613300012208Vadose Zone SoilMKQLALIKFLSAATILCAADVPITQDELVRRTQELYDAV
Ga0137376_1146867713300012208Vadose Zone SoilMKLALIKFLSAATIVCAADVPITQDELVRRTQELYDAVVS
Ga0137378_1046849933300012210Vadose Zone SoilMFSIMKLALVIIFATILVHAADLPITQDELVRRTQELYDAIVPGN
Ga0137387_1091859023300012349Vadose Zone SoilMKLLFVIIFATKLTHAAAADLPITQQELVRRTQELCDAIAPG
Ga0137386_1107625323300012351Vadose Zone SoilMKLVLIKFLSAATIVCAADIPITQDELVRRTQELYDAVVPG
Ga0137366_1028354633300012354Vadose Zone SoilMKQLALINFWSAATIVCAADVPITQDELVRRTQELYDAVV
Ga0137384_1093699213300012357Vadose Zone SoilMKQLAFIKFLSAATIVCAADVPITQDELVRRTQELYDAV
Ga0157285_1016065013300012897SoilMKQLALIKFLSAATIVCAADVPIAHDELVRRTQELYDAVV
Ga0157301_1025361213300012911SoilMKQLALIKFLSAATIVCAADVPIAHDELVRRTQELYDAVVPGNQ
Ga0137359_1018802813300012923Vadose Zone SoilMKLLALIAFTSAATLACAVNIPLTQEELVRRTQELYDAVAFANQA
Ga0137419_1091946213300012925Vadose Zone SoilMKLALIKFLSAATIVCAADVPITQNELVRRTQELYDAVVP
Ga0137416_1148148113300012927Vadose Zone SoilMKLPLVTFFSGVTIACATDVPITQDELVRRTQELYDA
Ga0137404_1158504513300012929Vadose Zone SoilMKLALVTFFSAVTLACAADVPITQDELVRRTQELYD
Ga0164303_1015265313300012957SoilLALIKFLFAATIVSAADVPITQDELLRRTQELYDSLVSGDQAP*
Ga0164303_1061524013300012957SoilMIFMKQLALIKFLSAATIVCAADVPITQDELVRRTQELYDALVPGNQGP
Ga0164301_1021388933300012960SoilMKFALITFLFAVTLACGADVQITPDELIRRTQELYDAIVPG
Ga0164301_1052103913300012960SoilMKLVLLGFLYLTTIACAGDVPITQEELIRRSQELYDSLVSGDQAP
Ga0126369_1204985723300012971Tropical Forest SoilMKQLALITFLSAGTIGCAADVPIVQDELVRRTQELYDA
Ga0164308_1034242113300012985SoilMKQLMLIKFLSAATIVCAADVPITQDELVRRTQELYDALVPGNQ
Ga0164308_1107115733300012985SoilMKLVLIKFLSAATIVCAADVPLTQDELVRRTQELYDALVPGN
Ga0164304_1143485113300012986SoilMKLVLIEFLSAATIVCAADVPITQDELIRRTQELYDSLVSG
Ga0164305_1037972333300012989SoilMKQLVLIKFLSAATIVCAADVPITQDELVRRTQELYDALVPG
Ga0134075_1018023623300014154Grasslands SoilMKLALVTFFYTVTLVFAADVPITQDELVRRTQELYD
Ga0134075_1033244313300014154Grasslands SoilMKLALVTFFSTVTLVYPADVRITQDELVRRTQELYD
Ga0134079_1038124523300014166Grasslands SoilMKLLALIAFTSAATFACAVNIPLTQEELVRRTQELYDAVASANQA
Ga0173480_1005082723300015200SoilMKQLTLIKFLSAATLVCAADVPITQDELVRRTQELYDALVSG
Ga0134085_1003447243300015359Grasslands SoilMKLALVIIFTTTLAYTGDVPITQDELVRRTQELYD
Ga0184635_1015110323300018072Groundwater SedimentMFSVMKLVLVIIFATALVHAADAPITQEELVRRTQEL
Ga0066669_1184454623300018482Grasslands SoilMILMKQLAFIKFLSAATIVCAADIPITQDELVRRTQELYDAVVPG
Ga0173481_1031370223300019356SoilMKQLALIKFLSAATIVCAADVPIAHDELVRRTQEL
Ga0173482_1004584913300019361SoilMKQLALITFLSAATIVCAADVPITHDELRRRTQELYD
Ga0193712_106271813300019880SoilMILMKQLALIKFLSAATIVCAADVPITQEELVRRTQELYDSL
Ga0193747_108843613300019885SoilMILMKQLVLIKFLSAATIVCAADVPITQDELIQRTQELYD
Ga0210406_1046518113300021168SoilMKLVLINFLSAATIVCAADVPLTQDELVRRTQELYDAVVP
Ga0222622_1063659713300022756Groundwater SedimentMKLVLITIFVTIFATTLAYAADAPITQDELVRRTQE
Ga0207693_1065513323300025915Corn, Switchgrass And Miscanthus RhizosphereMKQLALIKFLSAATIVCAAADIPITRDELVRRTQEL
Ga0207706_1006036333300025933Corn RhizosphereMKQLALITFLFAATIVCAADVPITQDELVRRTQELYDALVSG
Ga0207669_1069832113300025937Miscanthus RhizosphereMKLALIKFLSAATIVCAADVPITQDELVRRTQELYDALVSGN
Ga0207702_1003247853300026078Corn RhizosphereMKQLALITFLFAATIVCAADVPITQDELVRRTQELYDA
Ga0209237_110385513300026297Grasslands SoilMKLVPVIIFATTLAHAADVPITEDELVRRTQELCDAIAPGNQTP
Ga0209239_110297543300026310Grasslands SoilMKLALIKFLSAATIVCAADVPITQDELVRRTQELYDAVVPG
Ga0209375_123623023300026329SoilMKLALITFLSAVTLACAADVPITQDELVRRTQELYD
Ga0209156_1025524213300026547SoilMILMKQLVLIKFLSATTIVCAADVPITQDELVRRTQELY
Ga0209325_102197113300027050Forest SoilMKLALIKFLSAATIVCAADVPITQDELVRCTQELYDALVPGDQAP
Ga0209625_110457613300027635Forest SoilMKLPLVTFFSAVTIACATDVPITQDELVRRTQELYDAIVPG
Ga0207428_1006778013300027907Populus RhizosphereMKQLALISFLSAATVVCAADVPITQDELARRTQELYDSLVSGDR
Ga0307313_1008951813300028715SoilMKPALVTFFSVVTLACAADFPITQDELVHRTQELY
Ga0307284_1027835223300028799SoilMKFALTTFLFAVALAGAADVPITQEELVRRTQELYDAIVPGN
Ga0307305_1039103913300028807SoilMKQLALIKFLSAATIVCAADVPITQEELVRRTQELYDSL
Ga0307286_1010688513300028876SoilMKLALIKFLSAATIVCAADVPITQDELVRRTQELYDA
Ga0307308_1033643413300028884SoilMILMKQLALIKFLSAATIVCAADVPITQDELVRRTQELYDA
Ga0075400_1172807023300030972SoilMKLALIKFLSAATIVCAADVPITQDELIRRTQELY
Ga0170834_10351544533300031057Forest SoilMKLALVTFFYTVTLVYAADVPITQDELVRQTQELYDAVVPG
Ga0170824_10454194323300031231Forest SoilMFSLMKLVLVIIFATTLAHAADVPITQDELVRRTQEL
Ga0170824_12445857023300031231Forest SoilMFSVMKLVLVIIFATTLAHAADVPITQDELVRRTQELYDAIVPG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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