Metagenome / Metatranscriptome Family F098158

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098158
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	50 residues
Representative Sequence	ATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS
Number of Associated Samples	94
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	80.77 %
% of genes from short scaffolds (< 2000 bps)	90.38 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.731 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (14.423 % of family members)
Environment Ontology (ENVO)	Unclassified (36.538 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.192 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.76% β-sheet: 0.00% Coil/Unstructured: 39.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF02861	Clp_N	61.54
PF13649	Methyltransf_25	9.62
PF14081	DUF4262	3.85
PF12847	Methyltransf_18	2.88
PF08241	Methyltransf_11	0.96
PF07813	LTXXQ	0.96
PF07690	MFS_1	0.96
PF05977	MFS_3	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	61.54
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.85
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.73 %
Unclassified	root	N/A	18.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.73 %
Unclassified	root	N/A	18.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.73 %
Unclassified	root	N/A	18.27 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	80.77 %
Unclassified	root	N/A	18.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	80.77 %
Unclassified	root	N/A	18.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	62.50 %
Unclassified	root	N/A	18.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.96 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	25.00 %
Unclassified	root	N/A	18.27 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.96 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.27 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	17.31 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.96 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.96 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.27 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Nonomuraea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea	5.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.96 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.96 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.27 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.73 %
Nonomuraea montanisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	5.77 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.85 %
Actinomadura physcomitrii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura physcomitrii	0.96 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.96 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.96 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10406967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300005175\|Ga0066673_10318217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	908	Open in IMG/M
3300005177\|Ga0066690_11020236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300005332\|Ga0066388_100178472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2730	Open in IMG/M
3300005337\|Ga0070682_100876714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	735	Open in IMG/M
3300005337\|Ga0070682_101988228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	511	Open in IMG/M
3300005434\|Ga0070709_10323538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1132	Open in IMG/M
3300005434\|Ga0070709_10730404	Not Available	772	Open in IMG/M
3300005435\|Ga0070714_100930619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	844	Open in IMG/M
3300005436\|Ga0070713_102011106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300005437\|Ga0070710_11036176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	599	Open in IMG/M
3300005439\|Ga0070711_100401639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1112	Open in IMG/M
3300005440\|Ga0070705_101682802	Not Available	536	Open in IMG/M
3300005444\|Ga0070694_101753915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	529	Open in IMG/M
3300005467\|Ga0070706_100549078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1075	Open in IMG/M
3300005614\|Ga0068856_100858951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	927	Open in IMG/M
3300006028\|Ga0070717_11998000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300006163\|Ga0070715_10019483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2603	Open in IMG/M
3300006175\|Ga0070712_101844510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300006575\|Ga0074053_11769969	Not Available	623	Open in IMG/M
3300006579\|Ga0074054_11688125	Not Available	596	Open in IMG/M
3300006755\|Ga0079222_11174282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	684	Open in IMG/M
3300006755\|Ga0079222_11750245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	598	Open in IMG/M
3300006806\|Ga0079220_11245600	Not Available	618	Open in IMG/M
3300006904\|Ga0075424_100874374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300009011\|Ga0105251_10015190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4220	Open in IMG/M
3300009036\|Ga0105244_10442043	Not Available	598	Open in IMG/M
3300009092\|Ga0105250_10475039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	564	Open in IMG/M
3300009098\|Ga0105245_10794480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	984	Open in IMG/M
3300009098\|Ga0105245_10834221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	961	Open in IMG/M
3300009148\|Ga0105243_10375095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1314	Open in IMG/M
3300009177\|Ga0105248_11401536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	791	Open in IMG/M
3300009553\|Ga0105249_10090222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2865	Open in IMG/M
3300009553\|Ga0105249_11935376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	662	Open in IMG/M
3300010046\|Ga0126384_11940597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300010320\|Ga0134109_10319563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300010335\|Ga0134063_10721148	Not Available	517	Open in IMG/M
3300010361\|Ga0126378_13469831	Not Available	500	Open in IMG/M
3300010362\|Ga0126377_13320873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	520	Open in IMG/M
3300010371\|Ga0134125_11629403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	702	Open in IMG/M
3300010371\|Ga0134125_12416939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	571	Open in IMG/M
3300010373\|Ga0134128_10739823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	1091	Open in IMG/M
3300010373\|Ga0134128_11090797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	881	Open in IMG/M
3300010867\|Ga0126347_1388967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	777	Open in IMG/M
3300012200\|Ga0137382_11265727	Not Available	522	Open in IMG/M
3300012207\|Ga0137381_10268647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1483	Open in IMG/M
3300012207\|Ga0137381_10340774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1306	Open in IMG/M
3300012358\|Ga0137368_10896057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	541	Open in IMG/M
3300012359\|Ga0137385_10447270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1097	Open in IMG/M
3300012501\|Ga0157351_1062489	Not Available	516	Open in IMG/M
3300012951\|Ga0164300_10521380	Not Available	684	Open in IMG/M
3300012961\|Ga0164302_10762768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	725	Open in IMG/M
3300013105\|Ga0157369_10829330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	949	Open in IMG/M
3300013307\|Ga0157372_12337152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	614	Open in IMG/M
3300014325\|Ga0163163_12890776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300014969\|Ga0157376_12185042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	592	Open in IMG/M
3300015371\|Ga0132258_13649195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1051	Open in IMG/M
3300015372\|Ga0132256_103623515	Not Available	519	Open in IMG/M
3300016387\|Ga0182040_10240440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1355	Open in IMG/M
3300017959\|Ga0187779_11011593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300020002\|Ga0193730_1039162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1374	Open in IMG/M
3300021168\|Ga0210406_11256924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300021432\|Ga0210384_10509087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300021478\|Ga0210402_10576522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1043	Open in IMG/M
3300021560\|Ga0126371_10168929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2262	Open in IMG/M
3300025527\|Ga0208714_1074900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300025898\|Ga0207692_10214869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1137	Open in IMG/M
3300025900\|Ga0207710_10062975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1687	Open in IMG/M
3300025907\|Ga0207645_10202594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1306	Open in IMG/M
3300025910\|Ga0207684_10462570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1089	Open in IMG/M
3300025914\|Ga0207671_11444423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	532	Open in IMG/M
3300025916\|Ga0207663_11130823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	630	Open in IMG/M
3300025922\|Ga0207646_10549383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300025924\|Ga0207694_10485075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300025929\|Ga0207664_10453856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1144	Open in IMG/M
3300025949\|Ga0207667_11581855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	625	Open in IMG/M
3300026377\|Ga0257171_1044681	Not Available	765	Open in IMG/M
3300027725\|Ga0209178_1136835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	839	Open in IMG/M
3300027910\|Ga0209583_10416032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300028885\|Ga0307304_10011578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2807	Open in IMG/M
3300028885\|Ga0307304_10440744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	592	Open in IMG/M
3300028906\|Ga0308309_10200872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1643	Open in IMG/M
3300030494\|Ga0310037_10487114	Not Available	501	Open in IMG/M
3300030973\|Ga0075395_11246483	Not Available	532	Open in IMG/M
3300031446\|Ga0170820_10655658	Not Available	598	Open in IMG/M
3300031549\|Ga0318571_10122556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	874	Open in IMG/M
3300031572\|Ga0318515_10216195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1028	Open in IMG/M
3300031681\|Ga0318572_10486563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	735	Open in IMG/M
3300031723\|Ga0318493_10446714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	711	Open in IMG/M
3300031740\|Ga0307468_101333667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Nonomuraea → Nonomuraea montanisoli	655	Open in IMG/M
3300031748\|Ga0318492_10026326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2581	Open in IMG/M
3300031846\|Ga0318512_10227697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	917	Open in IMG/M
3300031962\|Ga0307479_10417724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1326	Open in IMG/M
3300032770\|Ga0335085_10206455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2401	Open in IMG/M
3300032770\|Ga0335085_11033837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	885	Open in IMG/M
3300032828\|Ga0335080_11741308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	610	Open in IMG/M
3300032829\|Ga0335070_11726633	Not Available	567	Open in IMG/M
3300032892\|Ga0335081_10378535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1831	Open in IMG/M
3300032893\|Ga0335069_11279101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	799	Open in IMG/M
3300033004\|Ga0335084_10051139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4262	Open in IMG/M
3300033134\|Ga0335073_12125531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura physcomitrii	507	Open in IMG/M
3300033158\|Ga0335077_10963864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	854	Open in IMG/M
3300034820\|Ga0373959_0158535	Not Available	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.88%
Host-Associated	Host-Associated	22.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.92%
Plants	Host-Associated → Plants	22.12%
Aquatic	Environmental → Aquatic	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.88%
Sediment	Environmental → Aquatic → Sediment	0.96%
Roots	Host-Associated → Plants → Roots	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.19%
Loam	Environmental → Terrestrial → Soil → Loam	22.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.96%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.54%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.81%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.96%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.96%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.96%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030973	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB6 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_104069672	3300003505	Forest Soil	MGVAATAIVAHTSTLGGQGFIILLIWVAIAIINVAYARHP*
Ga0066673_103182171	3300005175	Soil	SPVGARNVATTVTALGSMAMGVAATAIVSHTGNVGGQGFIILLIWVAIAIINVAYARRP*
Ga0066690_110202362	3300005177	Soil	PAQVGARNVATTVTALGSMALGVAATAIVARTGTFGGQGFIILLIWVVIAIVNVAYARHP
Ga0066388_1001784721	3300005332	Tropical Forest Soil	ARNVATTITALGSMALGVAATAILAHADHVAGQGFIILLVWVAIAIVNVAYARRL*
Ga0070682_1008767142	3300005337	Corn Rhizosphere	ITALGSVALGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARHS*
Ga0070682_1019882281	3300005337	Corn Rhizosphere	LGVAATAIVAHADNLGGQGFIILLIWAAVAVINIVYARRP*
Ga0070709_103235381	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS*
Ga0070709_107304042	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RPSPAGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0070714_1009306193	3300005435	Agricultural Soil	VGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS*
Ga0070713_1020111061	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	LGVAATAIVSHAANVGGQGFIIFLIWAAIAVINTVYARRP*
Ga0070710_110361761	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	GARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS*
Ga0070711_1004016393	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS*
Ga0070705_1016828022	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	NVATTITALGSMAMGVAATAIVAHTGSLGGQGFIILLIWVAIAIINVAYARRP*
Ga0070694_1017539151	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	ARNVATTITALGSVALGVAATAIVSSVGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0070706_1005490781	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GVAATAIVSSAGGLGGQGFIILVIWVAIAIINVAYARRS*
Ga0068856_1008589512	3300005614	Corn Rhizosphere	NVATTITALGSMAMGVAATAIVSHAADVGGQGFIILLIWAAIAVINIAYARRP*
Ga0070717_119980001	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	ASTITALGSMAMGVAATAIVAHAGTVGGQGFIILLIWVAIAIINVAYARRP*
Ga0070715_100194835	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	AGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0070712_1018445101	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GARNVATTITALGSMAMGVAATAIVSHAAYVGGQGFIILLIWAAIAVINIVYARRP*
Ga0074053_117699692	3300006575	Soil	ATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARRPLLHTP*
Ga0074054_116881251	3300006579	Soil	ARNVATTITALGSVTLGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARHS*
Ga0079222_111742821	3300006755	Agricultural Soil	RHVASTITALGSMALGVAATAIVAHADALGGQGFIILLIWVAIAIINVVNARRP*
Ga0079222_117502452	3300006755	Agricultural Soil	RNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0079220_112456002	3300006806	Agricultural Soil	AIVSSAGSLGGQGFIILLIWLAIAIINVAYARHS*
Ga0075424_1008743742	3300006904	Populus Rhizosphere	ATAIVSHAADVGGQGFIILLIWAAIAVINIAYARRP*
Ga0105251_100151907	3300009011	Switchgrass Rhizosphere	VATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWVAIAIINVAYARHS*
Ga0105244_104420432	3300009036	Miscanthus Rhizosphere	VATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0105250_104750392	3300009092	Switchgrass Rhizosphere	PAGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWVAIAIINVAYARHS*
Ga0105245_107944801	3300009098	Miscanthus Rhizosphere	VATTITALGSVALGVAATAIVSSAGSLGGQGFIILTIWVAIAIINVAYARRS*
Ga0105245_108342211	3300009098	Miscanthus Rhizosphere	VASTITALGSMAMGVAATAIVAHAGTVGGQGFIILLIWVAIAIINVAYARRP*
Ga0105243_103750951	3300009148	Miscanthus Rhizosphere	AIVSSAGSLGGQGFIILTIWVAIAIINVAYARRS*
Ga0105248_114015361	3300009177	Switchgrass Rhizosphere	PARPSPAGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0105249_100902225	3300009553	Switchgrass Rhizosphere	TTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0105249_119353761	3300009553	Switchgrass Rhizosphere	ITALGSVALGVAATAIVSSAGSLGGQGFIILTIWVAIAIINVAYARRS*
Ga0126384_119405972	3300010046	Tropical Forest Soil	SMALGVAATAVVAHAANAGGRGFIVLFIWVVIAIINVAYARRP*
Ga0134109_103195632	3300010320	Grasslands Soil	NVATTITALGSVALGVAATAIVSYAGSLGGQGLIILLIWVAIAIINVVYARRP*
Ga0134063_107211482	3300010335	Grasslands Soil	VATTVTALGSMAMGVAATAIVSHTGNVGGQGFIILLIWVAIAIINVAYARRP*
Ga0126378_134698312	3300010361	Tropical Forest Soil	PSQVGTRSVATTVTALGSMALGVAATAVVAHTGTLGGRGFVILVVWVAIAIINVAYARRP
Ga0126377_133208731	3300010362	Tropical Forest Soil	TAVVAHTGTLGGRGFVILVVWVAIAIINVAYARRP*
Ga0134125_116294032	3300010371	Terrestrial Soil	RNVATTITALGSVALGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARHS*
Ga0134125_124169392	3300010371	Terrestrial Soil	GVAATAIVSHAADVGGQGFIILLIWAAIAVINIAYARRP*
Ga0134128_107398233	3300010373	Terrestrial Soil	ATTITALGSVALGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARHS*
Ga0134128_110907972	3300010373	Terrestrial Soil	MALGVAATAIVAHAANVGGQGFIILLIWAAIAVINIVYARRP*
Ga0126347_13889671	3300010867	Boreal Forest Soil	VATTIIALGSMTLGVIATAIVAHAADLGGQGFIILLIWAAIAVVNIAHARRP*
Ga0137382_112657271	3300012200	Vadose Zone Soil	VATTITALGSMAMGVAATAIVSHTGNVGGQGFIILLIWVAIAIINVAYARRP*
Ga0137381_102686471	3300012207	Vadose Zone Soil	ARPSQLGARHVAATITALGSMAMGVAATAIVAHAGNLGGQGFIILLVWVAIAIINVAYARRP*
Ga0137381_103407741	3300012207	Vadose Zone Soil	VATTITALGSTALGVAATAVVSHASNSGGQAFMVLLIWVAIAIINVAYARRP*
Ga0137368_108960571	3300012358	Vadose Zone Soil	VATTITALGSVALGVAATAIVSYAGSLGGRGLIILLIWLIWVAIAIINVAYARRP*
Ga0137385_104472703	3300012359	Vadose Zone Soil	VATTITALGSMAMGVAATAIVAHTGSLGGQGFIILLIWLIWVAIAIINVAYARRP*
Ga0157351_10624892	3300012501	Unplanted Soil	MTITALGSVALGVAATAIVSYAGSLGGRGLIILLIWVAIAIINVAYARRP*
Ga0164300_105213801	3300012951	Soil	VATTITALGSVALGVTATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS*
Ga0164302_107627682	3300012961	Soil	VATTITALGSVALGVAATAIVSSAGGLGGRGFVILLIWVAIAIINVAYARRP*
Ga0157369_108293303	3300013105	Corn Rhizosphere	VGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWVAIAIINVAYARHS*
Ga0157372_123371523	3300013307	Corn Rhizosphere	GSVALGVAATAIVSSAGGLGGRGFIILLIWVAIAIINVAYARHS*
Ga0163163_128907763	3300014325	Switchgrass Rhizosphere	GARHVASTITALGSMAMGVAATAIVAHAGHLGGQGFIILLIWVAIAIINVVYARRP*
Ga0157376_121850421	3300014969	Miscanthus Rhizosphere	TALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS*
Ga0132258_136491953	3300015371	Arabidopsis Rhizosphere	ARHVATTITALGSMAMGVAATAIVAHAGTLGGQGVIILLIWVAIAIINVAYARRPLLHTP
Ga0132256_1036235151	3300015372	Arabidopsis Rhizosphere	ATTITALGSMALGVAATAIVSYAGSLGGQVFIILLIWVAIAIINVAYARRS*
Ga0182040_102404402	3300016387	Soil	VATTVTALGSMALGVAATATLAHTGTLGGRGFIILIVWVAIAIINIAYARRP
Ga0187779_110115931	3300017959	Tropical Peatland	GQRNVATTVTALGSIALGVGATAVVSHSSNAGGQAFMVLLIWVAIAIINVVYARRP
Ga0193730_10391621	3300020002	Soil	VGARNVATTITALGSVALGVAATAIVSSVGSLGGQGFIILTIWVAIAIINVAYARRS
Ga0210406_112569242	3300021168	Soil	SMAMGVAATAIVAHAGTLGGQGFIILLIWVAIAIINVAYARRP
Ga0210384_105090873	3300021432	Soil	PSQLGARHVASTITALGSMAMGVAATAIVAHAGALGGQGFIILLIWVAIAIINVAYARHP
Ga0210402_105765222	3300021478	Soil	TALGSMAMGVAATAIVAHTGNIGGQGFIILLIWVAITIINVAYARRP
Ga0126371_101689294	3300021560	Tropical Forest Soil	VTALGSMALGVAATAILSHTGTLGGRGFIILIVWVAIAIINVAYARRP
Ga0208714_10749001	3300025527	Arctic Peat Soil	SEVGARNVATTITALGSMAMGVAATAIVSHAPNVGGQGLIILLIWAAIAVVNVVYARRP
Ga0207692_102148693	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ARPSPAGARNVATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWVAIAIINVAYARHS
Ga0207710_100629754	3300025900	Switchgrass Rhizosphere	TALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS
Ga0207645_102025942	3300025907	Miscanthus Rhizosphere	MAMGVAATAIVAHAGTVGGQGFIILLIWVAIAIINVAYARRP
Ga0207684_104625702	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	GSVALGVAATAIVSSAGSLGGQGFIILVIWVAIAIINVAYARRS
Ga0207671_114444232	3300025914	Corn Rhizosphere	GARNVATTITALGSVALGVAATAIVSSAGGLGGRGFIILLIWVAIAIINVAYARHS
Ga0207663_111308231	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VATTITALGSVALGVAATAIVSSAGGLGGQGFIILLIWVAIAIINVAYARHS
Ga0207646_105493833	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TITALGSMAMGVAATAIVAHAGHLGGQGFIILLIWVAIAIINVVYARRP
Ga0207694_104850751	3300025924	Corn Rhizosphere	GSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS
Ga0207664_104538563	3300025929	Agricultural Soil	RPSPVGARNVATTITALGSVALGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARH
Ga0207667_115818551	3300025949	Corn Rhizosphere	VGARSVATTITALGSVALGVAATAIVSSAGGLGGRGFIILLIWVAIAIINVAYARHS
Ga0257171_10446812	3300026377	Soil	GSMALGVAATAIVSYAGSLGGQGFIILLIWVAIAIINVAYARRP
Ga0209178_11368351	3300027725	Agricultural Soil	LGSMAMGVAATAIVSHAADVGGQGFIILLIWAAIAVINIAYARRP
Ga0209583_104160322	3300027910	Watersheds	MAMGVAATAIVAHAGTLGGQGFIILLIWVAIAIINVAYARRP
Ga0307304_100115785	3300028885	Soil	GSVALGVAATAIVSSVGSLGGQGFIILTIWVAIAIINVAYARRS
Ga0307304_104407441	3300028885	Soil	ALGVAATAIVSYAGNLGGQAFIILLIWVAIAIINVAYARRP
Ga0308309_102008721	3300028906	Soil	ATAIVAHTGTLGGQGFIILLIWVAIAIINVAYARHP
Ga0310037_104871142	3300030494	Peatlands Soil	ATTITALGSMALGVAATAIVSHDNHPGGQAFMVLLIWVAIAVVNVAYARRP
Ga0075395_112464831	3300030973	Soil	ALGVAATAIVSYAGSLGGRGLIILLVWVAIAIINVANARRP
Ga0170820_106556581	3300031446	Forest Soil	SMAMGVAATAIVAHTGNIGGQGFIILLIWVAIAIINVAYARRP
Ga0318571_101225562	3300031549	Soil	VANTVTALGSMALGVAATAIVANAGMMGGRGFIILLIWAAVAIINVAYARRP
Ga0318515_102161951	3300031572	Soil	MALGVAATAIVANAGMMGGRGFIILLIWAAVAIINVAYARRP
Ga0318572_104865631	3300031681	Soil	ANTVTALGSMALGVAATAIVANAGMMGGRGFIILLIWAAVAIINVAYARRP
Ga0318493_104467142	3300031723	Soil	TVTALGSMVLGAAATAIVSHGDTLGGRGFVILVIWVAIAIINVAYARRP
Ga0307468_1013336671	3300031740	Hardwood Forest Soil	ARNVATTITALGSVALGVAATAIVSSAGSLGGQGFIILLIWVAIAIINVAYARHS
Ga0318492_100263265	3300031748	Soil	TVTALGSMALGVAATATLAHTGTLGGRGFIILIVWVAIAIINIAYARRP
Ga0318512_102276971	3300031846	Soil	VAATAIVANAGMMGGRGFIILLIWAAVAIINVAYARRP
Ga0307479_104177241	3300031962	Hardwood Forest Soil	TITALGSMALGVAATAVVSHATNSGGQAFMVLLIWVAIAVINVAYARRP
Ga0318559_103826802	3300032039	Soil	GSIALGVAATAVVAHAANDGGRGFIVLLIWVAIAVINVAYARRS
Ga0335085_102064551	3300032770	Soil	NTVTALGSMALGVAATAILAHGDTMGGRGFIILLIWVAIAIINVAYARRP
Ga0335085_110338371	3300032770	Soil	GVGATAILSHAGHVGGQGFIILLVWVAIAIVNVAYARRL
Ga0335080_117413081	3300032828	Soil	LGSMALGVAATAIVAHGDTMGGRGFIILLIWVAIAIINVAYARRP
Ga0335070_117266331	3300032829	Soil	VTALGSMALGVAATAVVSHGDTLGGRGFVILVIWIAIVIINVAYARRP
Ga0335081_103785351	3300032892	Soil	GSMALGVAATAVVSHGDTLGGRGFVILVIWVAIVIINVAYARRS
Ga0335069_112791011	3300032893	Soil	LGVAATAIIAHAANVGGQGFIILLIWAAIAIINIVYARRP
Ga0335084_100511391	3300033004	Soil	MALGVAATAIVSYAGSLGGQVFIIVLIWVAIAIINVAYARRP
Ga0335073_121255311	3300033134	Soil	SVALGVAATAIVSSAGSLGGRGFIIVLIWVAIAIINVAYARHS
Ga0335077_109638642	3300033158	Soil	SPAGQRNVATTVTALGSMALGVAATAIVSHSGNSGGQAFMVLLIWVAIAIINVAYARRP
Ga0373959_0158535_234_392	3300034820	Rhizosphere Soil	VATTITALGSVALGVAATAIVSSAGGLGGQGFIIVLIWLAIAIINVAYARHS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098158

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences