Metagenome / Metatranscriptome Family F098269

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098269
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	126 residues
Representative Sequence	MSDEPTGADGTMSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAIISWWSALDAKDSAITALRAEIFAIIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIRALRDEK
Number of Associated Samples	89
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	44.23 %
% of genes from short scaffolds (< 2000 bps)	89.42 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (86.538 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.423 % of family members)
Environment Ontology (ENVO)	Unclassified (22.115 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 65.38% β-sheet: 0.00% Coil/Unstructured: 34.62%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00005	ABC_tran	25.00
PF05425	CopD	12.50
PF00563	EAL	1.92
PF07690	MFS_1	0.96
PF00724	Oxidored_FMN	0.96
PF13115	YtkA	0.96
PF12399	BCA_ABC_TP_C	0.96
PF06157	DUF973	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	12.50
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.92
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.92
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.92
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.92
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.96
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.54 %
Unclassified	root	N/A	13.46 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.54 %
Unclassified	root	N/A	13.46 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.54 %
Unclassified	root	N/A	13.46 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	85.58 %
Unclassified	root	N/A	13.46 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	85.58 %
Unclassified	root	N/A	13.46 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	25.00 %
Unclassified	root	N/A	13.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9.62 %

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	17.31 %
Unclassified	root	N/A	13.46 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	7.69 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.96 %

Name	Rank	Taxonomy	Distribution
Microthrixaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae	17.31 %
Unclassified	root	N/A	13.46 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	7.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Microthrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	17.31 %
Unclassified	root	N/A	13.46 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	7.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
Actinomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	15.38 %
Unclassified	root	N/A	13.46 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	7.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
unclassified Actinomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Name	Rank	Taxonomy	Distribution
Candidatus Microthrix parvicella	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	15.38 %
Unclassified	root	N/A	13.46 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	7.69 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.92 %
Actinomyces sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	0.96 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.96 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_12077754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	787	Open in IMG/M
3300000956\|JGI10216J12902_115361301	Not Available	517	Open in IMG/M
3300001417\|JGI20196J14858_1020298	Not Available	562	Open in IMG/M
3300001538\|A10PFW1_10490796	Not Available	1259	Open in IMG/M
3300001686\|C688J18823_10534559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	750	Open in IMG/M
3300002568\|C688J35102_120918348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2323	Open in IMG/M
3300002568\|C688J35102_120925674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2419	Open in IMG/M
3300004081\|Ga0063454_100890257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300004081\|Ga0063454_101176845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	632	Open in IMG/M
3300004114\|Ga0062593_100390045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1239	Open in IMG/M
3300004114\|Ga0062593_100533718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1098	Open in IMG/M
3300004479\|Ga0062595_100355564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1023	Open in IMG/M
3300004479\|Ga0062595_102525931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	513	Open in IMG/M
3300004643\|Ga0062591_100041631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2528	Open in IMG/M
3300005176\|Ga0066679_10243011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1158	Open in IMG/M
3300005178\|Ga0066688_10501825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	781	Open in IMG/M
3300005179\|Ga0066684_10237854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1191	Open in IMG/M
3300005179\|Ga0066684_10244931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1175	Open in IMG/M
3300005208\|Ga0069003_10013447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1076	Open in IMG/M
3300005439\|Ga0070711_101479251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	592	Open in IMG/M
3300005445\|Ga0070708_100725023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	935	Open in IMG/M
3300005518\|Ga0070699_100828213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300005533\|Ga0070734_10265447	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300005548\|Ga0070665_100251085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1770	Open in IMG/M
3300005557\|Ga0066704_10160653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1510	Open in IMG/M
3300005559\|Ga0066700_10435220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	922	Open in IMG/M
3300005575\|Ga0066702_10876019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	535	Open in IMG/M
3300005576\|Ga0066708_10785333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300005586\|Ga0066691_10495287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	730	Open in IMG/M
3300005598\|Ga0066706_10693051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	809	Open in IMG/M
3300005764\|Ga0066903_104636679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	732	Open in IMG/M
3300006028\|Ga0070717_12070474	Not Available	512	Open in IMG/M
3300006057\|Ga0075026_100044033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2082	Open in IMG/M
3300006059\|Ga0075017_100009663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6126	Open in IMG/M
3300006641\|Ga0075471_10048935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2361	Open in IMG/M
3300006642\|Ga0075521_10294977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	780	Open in IMG/M
3300006797\|Ga0066659_10354673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	1139	Open in IMG/M
3300006800\|Ga0066660_10857932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	740	Open in IMG/M
3300009012\|Ga0066710_102640170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	720	Open in IMG/M
3300009098\|Ga0105245_12811388	Not Available	539	Open in IMG/M
3300009137\|Ga0066709_103790728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300010397\|Ga0134124_11989523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → unclassified Actinomyces → Actinomyces sp.	618	Open in IMG/M
3300011003\|Ga0138514_100149400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	519	Open in IMG/M
3300012014\|Ga0120159_1142239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	663	Open in IMG/M
3300012189\|Ga0137388_10541976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1081	Open in IMG/M
3300012200\|Ga0137382_10395508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	973	Open in IMG/M
3300012208\|Ga0137376_11624380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300012212\|Ga0150985_107095578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300012212\|Ga0150985_115722238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	952	Open in IMG/M
3300012212\|Ga0150985_118457073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	522	Open in IMG/M
3300012469\|Ga0150984_102587491	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	539	Open in IMG/M
3300012469\|Ga0150984_107943031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	670	Open in IMG/M
3300012469\|Ga0150984_112631130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix	998	Open in IMG/M
3300012923\|Ga0137359_11633309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	532	Open in IMG/M
3300012989\|Ga0164305_11456029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	605	Open in IMG/M
3300014058\|Ga0120149_1170227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	604	Open in IMG/M
3300015080\|Ga0167639_1025014	Not Available	832	Open in IMG/M
3300015087\|Ga0167637_1009682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1429	Open in IMG/M
3300015171\|Ga0167648_1003950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3805	Open in IMG/M
3300015197\|Ga0167638_1064034	Not Available	771	Open in IMG/M
3300015371\|Ga0132258_11216715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1904	Open in IMG/M
3300015371\|Ga0132258_13092339	Not Available	1151	Open in IMG/M
3300015371\|Ga0132258_13801220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1028	Open in IMG/M
3300015374\|Ga0132255_103599663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	659	Open in IMG/M
3300018000\|Ga0184604_10177010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	719	Open in IMG/M
3300018061\|Ga0184619_10359449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	664	Open in IMG/M
3300018433\|Ga0066667_10357638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1164	Open in IMG/M
3300018433\|Ga0066667_10781384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	809	Open in IMG/M
3300018481\|Ga0190271_11485950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	795	Open in IMG/M
3300018481\|Ga0190271_11697286	Not Available	745	Open in IMG/M
3300018482\|Ga0066669_10881466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300022756\|Ga0222622_11302906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	535	Open in IMG/M
3300025509\|Ga0208848_1010132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1965	Open in IMG/M
3300025544\|Ga0208078_1000846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7983	Open in IMG/M
3300025544\|Ga0208078_1071872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	717	Open in IMG/M
3300025692\|Ga0209744_1235911	Not Available	539	Open in IMG/M
3300025906\|Ga0207699_10200587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1352	Open in IMG/M
3300025921\|Ga0207652_10307017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1432	Open in IMG/M
3300025927\|Ga0207687_10819619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	794	Open in IMG/M
3300025934\|Ga0207686_11729200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	517	Open in IMG/M
3300026547\|Ga0209156_10490959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	507	Open in IMG/M
3300026865\|Ga0207746_1012787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300026988\|Ga0207834_1020366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	821	Open in IMG/M
3300027826\|Ga0209060_10344309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	679	Open in IMG/M
3300027915\|Ga0209069_10040211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2190	Open in IMG/M
3300028047\|Ga0209526_10365894	Not Available	963	Open in IMG/M
3300028379\|Ga0268266_11650805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	616	Open in IMG/M
3300028381\|Ga0268264_12309612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300028587\|Ga0247828_10632594	Not Available	657	Open in IMG/M
3300028592\|Ga0247822_10297344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	1233	Open in IMG/M
3300029984\|Ga0311332_11717758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	511	Open in IMG/M
3300030002\|Ga0311350_12004061	Not Available	510	Open in IMG/M
3300030838\|Ga0311335_10727657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	699	Open in IMG/M
3300030993\|Ga0308190_1129070	Not Available	582	Open in IMG/M
3300031093\|Ga0308197_10152837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	743	Open in IMG/M
3300031226\|Ga0307497_10078537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1235	Open in IMG/M
3300031250\|Ga0265331_10107949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1278	Open in IMG/M
3300031421\|Ga0308194_10312748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300031726\|Ga0302321_101263966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300031997\|Ga0315278_11025053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	820	Open in IMG/M
3300032770\|Ga0335085_10001171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59725	Open in IMG/M
3300032770\|Ga0335085_10007959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16271	Open in IMG/M
3300032955\|Ga0335076_10862463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300033551\|Ga0247830_10592378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Microthrixaceae → Candidatus Microthrix → Candidatus Microthrix parvicella	877	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.65%
Host-Associated	Host-Associated	16.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Plants	Host-Associated → Plants	16.35%
Aquatic	Environmental → Aquatic	8.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.69%
Sediment	Environmental → Aquatic → Sediment	5.77%
Peat	Environmental → Terrestrial → Peat	3.85%
Marine	Environmental → Aquatic → Marine	1.92%
Freshwater	Environmental → Aquatic → Freshwater	0.96%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.88%
Loam	Environmental → Terrestrial → Soil → Loam	14.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.85%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Lake	Environmental → Aquatic → Freshwater → Lake	0.96%
Coastal	Environmental → Aquatic → Marine → Coastal	0.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.96%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.31%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	8.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.81%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.96%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.73%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.81%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.81%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	3.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.96%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.96%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.96%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001417	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005208	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D2	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300015080	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6C, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015087	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6A, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015171	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3a, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025544	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025692	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-311 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026865	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 (SPAdes)	Environmental	Open in IMG/M
3300026988	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 5 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_120777542	3300000891	Soil	EVAKLRVTGGGANPERLGAQWGIGLTIVGFVVAIVAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKQ*
JGI10216J12902_1153613012	3300000956	Soil	MTDVNTEVTNPRSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGSQWGIGLTILGFIIAIIAFWSALNAKGDGQTMTALRSQIIGTIGAALAIVGIAIWVRNSITRYLRYWIIRLVYEEREQTDAIVKALRD
JGI20196J14858_10202981	3300001417	Arctic Peat Soil	MSDERTDASGTMSSSRLAQFEDEVGKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGVGIAVVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQALRERE*
A10PFW1_104907962	3300001538	Permafrost	MSDERTDASGTMSSSRLAQFEDEVRKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGIGIAVVGIAIWVRNSLTRYLRYWIIRLVYEQREQTDQLIRALREEK*
C688J18823_105345592	3300001686	Soil	MNDPNPAATELSSERLSQFQDEVAKLKVTGGGANPERLGAQWGIGLTIVGFLVAIIAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTD
C688J35102_1209183481	3300002568	Soil	MSDLKTDASAGELSSPRLAQFQEEVGKLKVSGGGANPERLGAQWGIGLTILGFVIAAISYISARQDTQFEFIQRDSIAAMIGVGIAIIGIAIWVRNSITRYLRYWIIRLVYEQREQTELLIKALKEK*
C688J35102_1209256742	3300002568	Soil	MNDPNPAATELSSERLSQFQDEVAKLKVTGGGANPERLGAQWGIGLTIVGFLVAIIAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKP*
Ga0063454_1008902572	3300004081	Soil	MSDLKTDASAGELSSPRLAQFQEEVGKLKVSGGGANPERLGAQWGIGLTILGFVIAAISYISARQDTQFEFIQRDSIAAMIGVGISIIGIAIWVRNSITRYLRYWIIRLVYEQREQTELLIKALKEK*
Ga0063454_1011768452	3300004081	Soil	MTDGEKTSVDAGTMSSPRLEQFQQEVGKLKVTGGGANPERLGSQWGIGLTILGFVIAIVSWWSALDSTSTLTGLRAICFTLIGVGLAIIGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVKALRDK*
Ga0062593_1003900452	3300004114	Soil	MNDQNPAATELSSERLAQFQDEVAKLKVTGGGANPERLGAQWGIGLTIVGFVVAIVAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKQ*
Ga0062593_1005337182	3300004114	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVMVISWFSAKGSSEVNTILRSQIFALIGVGIAIVGIVLWVRNSLTRYMRYWIIRLVYEQREQTEQLIQALRDNK*
Ga0062595_1003555642	3300004479	Soil	MSDVKTDATAGSLSSPRLAQFQEEVGKLKVTGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTQFEFIQRDSIAAMIGIGISIVGIVIWLRNSMTRYMRYWIIRLVYEQREQTEQLIKALRDGK*
Ga0062595_1025259311	3300004479	Soil	MNDDGKTNLAAEPMSSPRLEQFQQEVAKLKVSGGGANPERLGAQWGIGLTILGFVIAVIGWWSALDAGDALSALRSQTGAAIGIGLSIVGIVIWARNSMTRYLRYWIIRIVYEEREQAEQIARA
Ga0062591_1000416311	3300004643	Soil	VAKLRVTGGGANPERLGAQWGIGLTIVGFVVAIVAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKQ*
Ga0066679_102430112	3300005176	Soil	MSDVKTDETAASLSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGVSIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVKALREGNSSR*
Ga0066688_105018252	3300005178	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVMWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDTE*
Ga0066684_102378542	3300005179	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVMWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDTP*
Ga0066684_102449312	3300005179	Soil	MNDTPSSTGTMSSARLAEFQEEVSKMKVGGGAANPERLAERWGIGLTILGFVIAFLSWWSAFNATRIEVIHRSAIFAAIGVGVSIVGIVIWIRNSMTRYLRYWIIRLVYEQREQTERIVDALRER*
Ga0069003_100134472	3300005208	Natural And Restored Wetlands	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVVAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIQALREKQ*
Ga0070711_1014792511	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSDVKTDETAESMSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLAILGMIIAIISWISARQDTAFEFIQRDTIAAMIGIGISIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVQALRESK*
Ga0070708_1007250232	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK*
Ga0070699_1008282132	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	QFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK*
Ga0070734_102654471	3300005533	Surface Soil	MMTDDQNAKAAPASSARLEEFQAEVAKLKVTGGGANPERLGSQWGVGLTIFGFVVMVIAWWSAHNSGDTLTNLRSEIVGTIGLGISIVGIVIWLRNSITRYLRYWIIRLVYEQRE
Ga0070665_1002510852	3300005548	Switchgrass Rhizosphere	MNDEHTDTSGTMSPSRLSQFEAEVAKLKVTGGGANPERLGSQWGIGLTIVGFVIAIISWWSALDAPGDGSGTSTMLRAQIFGIIGIGIAVVGIVIWLRNSITRYLRYWIIRLVYEQREQTEQLIQALRDGK*
Ga0066704_101606533	3300005557	Soil	MNDEHTSAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDTP*
Ga0066700_104352202	3300005559	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDTP*
Ga0066702_108760192	3300005575	Soil	MSDVKTDETAASMSSPRLAQFQQEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGVSIVGIAIWVRNSITRYLRYWIIRLVYEQREQT
Ga0066708_107853331	3300005576	Soil	MNDEQPGAGGTLSPSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDNK*
Ga0066691_104952872	3300005586	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVMWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRD
Ga0066706_106930511	3300005598	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWAALDGKDALSVLRAETFAIIGVGIALVGIVMWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK*
Ga0066903_1046366792	3300005764	Tropical Forest Soil	PAMSDVTTHDMAAGDAQNPPSPGAAAPMSAPRLAQFEEEVAKLKVTGGGANPERLGSQWGIGLTIVGFIVAIIAWLSAQNANNFATIQRSWIMATVGIGVAIVGIVIWVRNSITRYLRYWIIRLVYEQREQTDAIVQALKDK*
Ga0070717_120704741	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MNDAQTDANGTMSSSRLAEFEAEVGKLKVTGGGANPERLGSQWGIGLTILGFVIAFISWWSALDAKGDNAAVSALRAEIFGFIGVGIAIVGIVIWARNSITRYLRYWIIRLVYEQREQTEQLVKALREGNSSR
Ga0075026_1000440333	3300006057	Watersheds	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVVAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQALRDQK*
Ga0075017_1000096635	3300006059	Watersheds	MSDEPTGADGTMSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAIISWWSALDAKDSAITALRAEIFAIIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIRALRDEK*
Ga0075471_100489354	3300006641	Aqueous	METQSGSDGTMSAERLARFEEEVGKLKVTGGAANPERLGSAWGAGLTVFGLVVAFISWWSAYNAGNFESIHRSAIFALIGVGVAMVGMIVWIRNSMTRYLRYWIIRIVYEQREQT
Ga0075521_102949772	3300006642	Arctic Peat Soil	SQFEAEVGKLKVTGGGANPERLGAQWGIGLTILGFVVVIISWWSALDAKGDGAAVSALRAEIFGLIGVGIAVVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQALRDGK*
Ga0066659_103546732	3300006797	Soil	MNDEHTGAGGTLSPSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK*
Ga0066660_108579321	3300006800	Soil	MSDVKTDETAASLSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDTIAAMIGIGISIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVKALRE
Ga0066710_1026401701	3300009012	Grasslands Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLASRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK
Ga0105245_128113882	3300009098	Miscanthus Rhizosphere	DEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVMVISWFSAKGSSEVNTILRSQIFALIGVGIAIVGIVLWVRNSLTRYMRYWIIRLVYEQREQTEQLIQALRDNK*
Ga0066709_1037907281	3300009137	Grasslands Soil	EHTGAGGTLSSSRLAQFEDAVAKLKVTGGGAKPERLRSGRGIGFTIYGAVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK*
Ga0134124_119895231	3300010397	Terrestrial Soil	GGSEMNDQNPAATELSSERLAQFQDEVAKLRVTGGGANPERLGAQWGIGLTIVGFVVAIVAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKQ*
Ga0138514_1001494002	3300011003	Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLI
Ga0120159_11422391	3300012014	Permafrost	PQWSIHPNEELPVMNDENTGAGGTMSSSRLAQFEAEVAKLKVTGGGANPERLGSRWGIGLTILGFVIAIISWWSALDGKDALSVLRAETFAFIGVGIAVVGIVIWARNSLTRYLRYWIIRLVYEQREQTDQLIRALREEK*
Ga0137388_105419761	3300012189	Vadose Zone Soil	HPNEELPVMNDENTGAGGTMSSSRLAQFEAEVAKLKVTGGGANPERLGSRWGIGLTILGFVVAIISWWSALDGKDALSVLRAETFAFIGVGIAVVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDDK*
Ga0137382_103955082	3300012200	Vadose Zone Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDAK*
Ga0137376_116243801	3300012208	Vadose Zone Soil	EEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTQFEFIQRDSIAAMIGIGISIVGIVIWLRNSMTRYMRYWIIRLVYEQREQTEQLIKALRDGK*
Ga0150985_1070955782	3300012212	Avena Fatua Rhizosphere	LIEEIRPMSDLKTDASAGELSSPRLAQFQEEVGKLKVSGGGANPERLGAQWGIGLTILGFVIAAISYISARQDTQFEFIQRDSIAAMIGVGIAIIGIAIWVRNSITRYLRYWIIRLVYEQREQTELLIKALKEK*
Ga0150985_1157222381	3300012212	Avena Fatua Rhizosphere	MMAIEEHEVMTDVNTEVTSATSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGTQWGIGLTIVGFLVIIVAYWSALDSKSNLTSLRSQIIGVLGAALAIVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDK*
Ga0150985_1184570731	3300012212	Avena Fatua Rhizosphere	MMAIEEHEVMTDVNTEVTSPNSEGTLSSARLEQFEAEVGKLKVTGGGANPERLGSQWGIGLTIVGFVVMIVAYWSALDSKSTLTALRSQIIGVGGAALAIVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDK*
Ga0150984_1025874912	3300012469	Avena Fatua Rhizosphere	ELSSERLSQFQDEVAKLKVTGGGANPERLGAQWGIGLTIVGFLVAIIAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKP*
Ga0150984_1079430312	3300012469	Avena Fatua Rhizosphere	RRPNDVKEIAVMTDGEKTSVDAGTMSSPRLEQFQQEVGKLKVTGGGANPERLGSQWGIGLTILGFVIAIVSWWSALDSTSTLTGLRAICFTLIGVRLAIIGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVKALREKQ*
Ga0150984_1126311302	3300012469	Avena Fatua Rhizosphere	MMAIEEHEVMTDVNTEVTSATSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGTQWGIGLTIVGFLVIIVAYWSALDSKSNLTALRSQIIGVLGAALAIVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDK*
Ga0137359_116333091	3300012923	Vadose Zone Soil	MNDENTGAGGTMSSSRLAQFEAEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVAVIAWFSAKDSSDVNTILRSQIFAFIGVGIAVVGIAIWIRNSLTRYLRYWIIRLVYEQREQTEQLIQALRDNK*
Ga0164305_114560291	3300012989	Soil	EVGKLKVSGGGANPERLGAYWGIGLTILGFVIAIISWWSALDSPDAVTGLRSVCFTLIGAALAIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLIKALRDK*
Ga0120149_11702272	3300014058	Permafrost	MNDENTGAGGTMSSSRLAQFEAEVAKLKVTGGGANPERLGSRWGIGLTILGFVVAIISWWSALDGKDALSVLRAETFAFIGVGIAVVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQVQRD
Ga0167639_10250142	3300015080	Glacier Forefield Soil	AQNPAQDPAQDPANEEFRVMSDERTDASGTMSSSRLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGIGIAIVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIQELRERK*
Ga0167637_10096821	3300015087	Glacier Forefield Soil	DPANEEFRVMSDERTDASGTMSSSRLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGIGIAIVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQELRERK*
Ga0167648_10039502	3300015171	Glacier Forefield Soil	MNDEHTDASGTMSSSRLTQFEEEVLKLKVTGGGANPERLGSQWGIGLTIVGFVVAVISWWNALDGKDALSVLRSETFAFIGVGIAVVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLVKALRDGK*
Ga0167638_10640342	3300015197	Glacier Forefield Soil	LAPTTRPRGSIHYDQNLAQDPAQDPANEEFRVMSDERTDASGTMSSSRLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGIGIAIVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIQELRERK*
Ga0132258_112167152	3300015371	Arabidopsis Rhizosphere	MNDVKIDVPSGEMSTQRLDQFQEEVAKLKVTGGGAYPERLGAQWGIGLTILGFVIQIIAWFSARQDTSFEFIQRDTIAAMIGIAVSIVGIVIWVRNSTTRYLRYWIIRLVYEQREQTEQIVKALRER*
Ga0132258_130923391	3300015371	Arabidopsis Rhizosphere	MNDEHTAAADPEPTMSSPRLEQFQEEVAKLKVTGGGANPERLGAQWGIGLTIFGLIVSFISWWSALNAGTFEDIHRAAIFALIGVSISVIGIVLWLRNSMTRYLRYWIIRL
Ga0132258_138012202	3300015371	Arabidopsis Rhizosphere	MTDQNPAATELSSERLGQFQDEVAKLKVTGGGANPERLGAQWGIGLTIVGFLVAIIAYWSALDSKSTNTQLRSQIIAIIGIGLALVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDKQ*
Ga0132255_1035996632	3300015374	Arabidopsis Rhizosphere	MNDEHAAAADPEPTMSSPRLEQFQEEVAKLKVTGGGANPERLGAQWGIGLTIFGLIVSFISWWSALNAGTFEDIHRAAIFALIGVSISVIGIVLWLRNSMTRYLRYWIIRLVYEQREQTEQIVKALRER*
Ga0184604_101770102	3300018000	Groundwater Sediment	RLAQFEDEVAKLKVTGGGANPERSGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQALRDNK
Ga0184619_103594492	3300018061	Groundwater Sediment	MSDVRTDETTGSLSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGISLVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLIKALR
Ga0066667_103576381	3300018433	Grasslands Soil	MNDTPSSTGTMSSARLAELQEEVSKMKVGGGAANPERLAERWGIGLTILGFVIAFLSWWSAFNATRIEVIHRSAIFAAIGVGVSIVGIVIWIRNSMTRYLRYWIIRLVYEQREQTERIVDALRER
Ga0066667_107813842	3300018433	Grasslands Soil	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDNK
Ga0190271_114859502	3300018481	Soil	MTDVNTEVTAPGSEGTMSSARLEQFESEVGKLKVTGGGANPERLGSQRGIGLTIFGFVIAIIAWWSALNSNQAVTGIRSQIMGIIGVGLAIVGIAIWVRNSLTRYLRYWIIRLVYEQREQTDALIKALR
Ga0190271_116972862	3300018481	Soil	MAIEEHEVMTDVNTEVTSTTGEGTMSSARLEQFEAEVAKLKVTGGGANPERLGTQWGIGLTIVGFLTIIVAYWSALDSKSNLTALRSQIIGVLGAALAIVGIVIWVRNSITRYLRYWIIRLVYEQREQTDALIKALRDK
Ga0066669_108814662	3300018482	Grasslands Soil	MNDTPSSTGTMSSARLAEFQEEVSKMKVGGGAANPERLAERWGIGLTILGFVIAFLSWWSAFNATRIEVIHRSAIFAAIGVGVSIVGIVIWIRNSMTRYLRYWIIRLVYEQREQTEQLIQARRDTP
Ga0222622_113029061	3300022756	Groundwater Sediment	LAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVMVISWFSAKGSSEVNTILRSQIFALIGVGIAVVGLVLWIRNSLTRYLRYWIIRLVYEQREQTEQLIQALRDNE
Ga0208848_10101323	3300025509	Arctic Peat Soil	MSDERTDASGTMSSSRLAQFEDEVGKLKVTGGGANPERLGSQWGIGLTILGFVIAVISWWSALDAKGDNAAVSALRAEIFAFIGVGIAVVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQALRERE
Ga0208078_10008465	3300025544	Arctic Peat Soil	MSDERTDASGTMSSSRLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTILGFVIAIISWWSALDAKGDNAAVSALRAEIFAFIGIGIAIVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQELRERK
Ga0208078_10718721	3300025544	Arctic Peat Soil	MSDESTDTSGTMSSSRLSQFEAEVGKLKVTGGGANPERLGQQWGIGLAILGLVVVVVSWWSALDATGDGAAVSALRAEIFALVGVVVAVVGVVIWLRNSITRYLRYWIIRLVYEQREQTEQLIQALRDQK
Ga0209744_12359111	3300025692	Arctic Peat Soil	MNDEPTGAGAKLSSSRLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIVGFVVAIVSWWSALDAKGDNPAVTALRAEIFAIIGVGIALVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLVQA
Ga0207699_102005872	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSDVKTDETAESMSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLAILGMIIAIISWISARQDTAFEFIQRDTIAAMIGIGISIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLVQALRDSK
Ga0207652_103070172	3300025921	Corn Rhizosphere	MNDEHTDATGTMSSSRLSQFEAEVAKLKVTGGGANPERLGSQSGIGLTILGFVIAIIAWWSALDAKGDNAAVSALRAEIFGFIGIGVAIVGIVIWARNSITRYLRYWIIRLVYEQREQTEQLVQALRDNK
Ga0207687_108196192	3300025927	Miscanthus Rhizosphere	DEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVMVISWFSAKGSSEVNTILRSQIFALIGVGIAIVGIVLWVRNSLTRYMRYWIIRLVYEQREQTEQLIQALRDNK
Ga0207686_117292001	3300025934	Miscanthus Rhizosphere	MSDVKTDATAGSLSSPRLAQFQEEVGKLKVTGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTQFEFIQRDSIAAMIGIGISIVGIVIWLRNSMTRYMRYWIIRLVYEQREQTEQLIKALRDGK
Ga0209156_104909591	3300026547	Soil	EHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIFGFVVSIISWWSALDGKDALSVLRAETFAFIGVGIAVVGVVIWARNSLTRYLRYWIIRLVYEQREQTEQLIQARRDTP
Ga0207746_10127872	3300026865	Tropical Forest Soil	MNKTTTGDADPVVAPAGAAPADGKGPAMSSERLAQFEDEVAKLKVTGGGVNPERLGAKWGIGLTIVGFVVAVIAWFSANGAGNMADINRSQIWAVIGVGISIVGIAMWVRNSITRYLRYWIIRLVYEQREQTEAIVKALKEK
Ga0207834_10203661	3300026988	Tropical Forest Soil	AQFEDEVAKLKVTGGGVNPERLGAKWGIGLTIVGFVVAVIAWFSANGADNMADINRSQIWAVIGVGISIVGIAMWVRNSITRYLRYWIIRLVYEQREQTEAIVKALKEK
Ga0209060_103443092	3300027826	Surface Soil	MMTDDQNAKAAPASSARLEEFQAEVAKLKVTGGGANPERLGSQWGVGLTIFGFVVMVIAWWSAHNSGDTLTNLRSEIVGTIGLGISIVGIVIWLRNSITRYLRYWIIRLVYEQREQTEQIVE
Ga0209069_100402113	3300027915	Watersheds	MSDDPTGADGKLSSTRLAQFEAEVGKLKVTGGGANPERLGTQWGIGLTILGFVIAIISWWSALDAPSDTGAVTALRAEIMGAIGIGLAVVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQALRDQK
Ga0209526_103658941	3300028047	Forest Soil	MSDVKTDETTGSLSTPRLAQFQEEVGKLKVSGGGANPERLGAQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGISIVGIAIWLRNSMTR
Ga0268266_116508051	3300028379	Switchgrass Rhizosphere	MNDEHTDTSGTMSPSRLSQFEAEVAKLKVTGGGANPERLGSQWGIGLTIVGFVIAIISWWSALDAPGDGSGTSTMLRAQIFGIIGIGIAVVGIVIWLRNSITRYLRYWIIRLVYEQREQTEQLIQALRDGK
Ga0268264_123096122	3300028381	Switchgrass Rhizosphere	MNDEHTGAGGTLSSSRLAQFEDEVAKLKVTGGGANPERLGSRWGIGLTIVGFVVMVISWFSAKGSSEVNTILRSQIFALIGVGIAIVGIVLWVRNSLTRYMRYWIIRLVYEQREQTEQLIQALRDNK
Ga0247828_106325942	3300028587	Soil	MTDVNTEVTNPGSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGSQWGIGLTILGFIIAIIAFWSALNAKGDGQTMTALRSQIIGTIGAALAIVGIAIWVRNSITRYLRYWIIRLVYEEREQTDAIVKALRDK
Ga0247822_102973442	3300028592	Soil	MTDVNTEVTNPRSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGSQWGIGLTILGFIIAIIAFWSALNAKGDGQTMTALRSQIIGTIGAALAIVGIAIWVRNSITRYLRYWIIRLVYEEREQTDAIVKALRDK
Ga0311332_117177581	3300029984	Fen	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVIAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQAQRDGK
Ga0311350_120040612	3300030002	Fen	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVVAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQT
Ga0311335_107276572	3300030838	Fen	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVVAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYE
Ga0308190_11290702	3300030993	Soil	MSDVKTDETAGSLSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGISLVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQLIKSLGDGK
Ga0308197_101528372	3300031093	Soil	MSDVKTDEAAGSLSSPRLAQFQDEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTQFEFIQRDSIAAMIGIGISIVGIAIWLRNSITRYLRYWIIRLVYEQREQTEQLIKALRDGK
Ga0307497_100785372	3300031226	Soil	MNDEHTAAADPEPTMSSPRLEQFQDEVAKLKVTGGGANPERLGAQWGIGLTIFGLIVSFISWWSALNAGTFEDIHRAAIFALIGVSISVIGIVLWLRNSMTRYLRYWIIRLVYEQREQTEQIVKALRDK
Ga0265331_101079492	3300031250	Rhizosphere	MSDEHTDASGTMSSSRLAQFEAEVGKLKVTGGGANPERLGSQWGIGLTILGFVILVISWFSAKDSGDVNTILRSQIMGLIGIGIAVVGIVIWVRNSLTRYLRYWIIRLVYEQREQTEQLIQALRDQK
Ga0308194_103127482	3300031421	Soil	MSDLKTDETAGSLSSPRLAQFQEEVGKLKVSGGGANPERLGSQWGIGLTILGMVIAVVSWISARQDTAFEFIQRDSIAAMIGIGISIVGIAIWVRNSITRYLRYWIIRLVYEQREQTEQ
Ga0302321_1012639662	3300031726	Fen	MTDQPAGAEPTLSSARLAQFEDEVAKLKVTGGGANPERLGSQWGIGLTIFGFVVAIISWWSALDAKDSAITALRAEIFALIGIGISLVGIVIWVRNSLTRYLRYWIIRLVYEQREQTDQLIQALREKQ
Ga0315278_110250531	3300031997	Sediment	MTDEHAAAAATEPTMSSPRLAQFQEEVAKLKVTGGGANPERLGGQWGIGLTIFGFVVAFISWWSALNAGTFEDIYRSQIFALIGVGIAIVGIVLWIRNSMTRYLRYWIIRLVYEQREQTEQIV
Ga0335085_100011712	3300032770	Soil	MNDEPTNAAADGTMSSTRLAQFEAEVAKLKVTGGGANPERLGAQWGIGLTILGFVIAIISWWSALDAHGDGAAVTALRAEIFGAIGIGVAIVGIVIWARNSLTRYLRYWIIRIVYEQREQTEQLVQALRDRK
Ga0335085_1000795915	3300032770	Soil	MNDENTGAGGTMSSSRLAQFEEEVAKLKVTGGGANPERLGAQWGIGITILGFVIAIISWWSALDAPGDGTGTPTMLRAEIFGAIGVGLAIVGIVIWARNSLTRYLRYWIIRLVYEQREQTEQLVQALRDGK
Ga0335076_108624631	3300032955	Soil	MNDEETAATGKMSSSRLAQFEEEVGKLKLTGGGANPERLGSQWGIGLTILGFVIAIISWFSALDAPNAGDGHAVMTALRSEITAAIGIAIAFVGIVIWARNSLTRYLRYWIIRLVYEQREQTERLIDAL
Ga0247830_105923782	3300033551	Soil	MTDVNTEVTNPRSEGTMSSARLEQFEAEVAKLKVTGGGANPERLGSQWGIGLTILGFIIAIIAFWSALNAKGDGQTMTALRSQIIGTIGAALAIVGIAIWVRNSITRYLRYWIIRLVYEEREQTDAIVK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098269

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences