Metagenome Family F098341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098341
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	93 residues
Representative Sequence	LIQDHVCFLESGFRETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPKVVKNLEISYYLLIISNLVLKLLIAIYILF
Number of Associated Samples	23
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.97 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	23
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (95.146 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza (74.757 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (84.466 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.39% β-sheet: 0.00% Coil/Unstructured: 33.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF03468	XS	2.91
PF02781	G6PD_C	2.91
PF08777	RRM_3	1.94
PF03195	LOB	1.94
PF03732	Retrotrans_gag	1.94
PF07727	RVT_2	1.94
PF13976	gag_pre-integrs	1.94
PF01657	Stress-antifung	0.97
PF00098	zf-CCHC	0.97
PF12819	Malectin_like	0.97
PF00481	PP2C	0.97
PF03106	WRKY	0.97
PF01061	ABC2_membrane	0.97
PF14244	Retrotran_gag_3	0.97
PF13961	DUF4219	0.97
PF08284	RVP_2	0.97
PF00069	Pkinase	0.97
PF00931	NB-ARC	0.97
PF14223	Retrotran_gag_2	0.97
PF13193	AMP-binding_C	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	2.91
COG0631	Serine/threonine protein phosphatase PrpC	Signal transduction mechanisms [T]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
All Organisms	root	All Organisms	4.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
cellular organisms	root	All Organisms → cellular organisms	4.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.91 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	1.94 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Lactobacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales	1.94 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Lactobacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae	1.94 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Weissella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella	1.94 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.15 %
Weissella confusa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa	1.94 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300031507\|Ga0307509_10053911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa	4283	Open in IMG/M
3300032389\|Ga0325405_1000748	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	31821	Open in IMG/M
3300032390\|Ga0325404_1030050	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	4267	Open in IMG/M
3300033180\|Ga0307510_10063412	All Organisms → cellular organisms → Bacteria	3764	Open in IMG/M
3300034389\|Ga0325419_041743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa	3043	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	74.76%
Wood	Host-Associated → Plants → Wood	18.45%
Phylloplane	Host-Associated → Plants → Phylloplane	6.80%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	74.76%
Unclassified	Host-Associated → Plants → Wood → Unclassified	18.45%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	6.80%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	74.76%
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	18.45%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	6.80%

Habitat	Taxonomy	Distribution
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	74.76%
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	18.45%
Leaf	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf	6.80%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031838	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032374	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300032390	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1	Host-Associated	Open in IMG/M
3300032741	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdKOR-R3	Host-Associated	Open in IMG/M
3300033160	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R3	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034389	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4	Host-Associated	Open in IMG/M
3300034689	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2	Host-Associated	Open in IMG/M
3300034899	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R4	Host-Associated	Open in IMG/M
3300034901	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0307517_100123436	3300028786	Ectomycorrhiza	LLDEVSRYDLGYVYFPEIGFRETIFQTFLCLFAIRKVGQRKTLCSQRKIWLGLQESVFLENLGRKHFPEVVKNLKISYYLLIISNLVLNLLIVIYILF
Ga0307517_100302823	3300028786	Ectomycorrhiza	VHVCAIFLLESDFQEIIFQIFLYLFTNMKVGQRKTLSSQMKIWIGFQESVFLKNLDGKHFPEVVKNLEMSYYLLFILNLVLKLLIAIYILF
Ga0307517_1003203112	3300028786	Ectomycorrhiza	LIQDHVCFLESGFRETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPKVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0307517_100384081	3300028786	Ectomycorrhiza	MQDSPIKSLKFILYYVCFLKTSFQKITFQTFLCLFAIRKVGQQKTLFGQWKIWLGFQVSIFLENLGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307517_100557732	3300028786	Ectomycorrhiza	MRLQLKPNLGYVCFPESDFQETAFQTLLCLFVIKKVGQRKTLSSQRKIWLGFQEIVFLENLGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307517_100594072	3300028786	Ectomycorrhiza	MRNYGYVCFLESGFRKTTFQTFLCLFAIKKDGQQKTLSSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLLIISNLIHKLLIAIYILF
Ga0307517_101804082	3300028786	Ectomycorrhiza	LCFVFPFPTTPLGYVCFLEFTFWETTFQTFLCLFVTRKAGQQKILSSQRKIWLGFQESVFLENLGGKHFLEVVKNLEISYYLLIISNLILKLL
Ga0307517_103661201	3300028786	Ectomycorrhiza	MLLNIISLVGYVCFPESDFRETTFQTFLYLFAIRKVGQRKTLFSQRKIWLGFQESVFLKNLSGKHFPEVVKNLEMSYYLLIISNLVLKLL
Ga0307515_100480881	3300028794	Ectomycorrhiza	LLGYVCFSESGFQEITFQTFLCLFSIKKVGQRKTLSSQKKIYLGFQESVFLKNLGGKHFSEVMKNLEMLYYLLIISNLVLKLLIVIYILF
Ga0307515_100944421	3300028794	Ectomycorrhiza	MKILKINLGYVCFSEFTFRETTFQTFLYLFTIRKVGQRKTLSSQRKIWLGFQESVFLKNLGEKNFPEIVKKLKISYYLLIISNLIPKLLIAIYIYFVLNIYFLISFLKI
Ga0307515_101110301	3300028794	Ectomycorrhiza	LIQDHVCFLESGFRETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPKVVKNLEISYYLLIISNLVFKLLIAIYILF
Ga0307515_101690271	3300028794	Ectomycorrhiza	LESGLREITFQTFLCLFAIRKFGQRKTLSSQKKIWLGFQESVFLENLGGKHFPEVVKNLEISYYLLIISNLILKILIAIYI
Ga0307515_101928991	3300028794	Ectomycorrhiza	VFKIPLGYVCFLESGFRETTFQTFLCLFAIRKVGQRKTLFNQSKIWLGFKKSVFLENLSGKHFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0307515_102340431	3300028794	Ectomycorrhiza	VFKIPLGYVCFPESDFRETTFQNFLCLFANRKVGQPKTLFNQRKIWLGFQESVFLENLGRKHFPEVVKNLEVSYYLMIISNLVLKLLIAIYILF
Ga0307515_103349341	3300028794	Ectomycorrhiza	MPLMSFYSLGYVCFPESGFWKIIFQTFLYLFAIRKVGQRKTLSNQRKIWLGFQESVFLKNLDEKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307515_105810521	3300028794	Ectomycorrhiza	MAISLRILYLGCVCFSESSFLETTFQTFLCLFAIRKVGQRKTLFSQRKIWLGFQESIFLLFLGGKHFPKVVKNLEMLYYLLIISNLVLKLLIAIYILF
Ga0307511_100573431	3300030521	Ectomycorrhiza	MYTNLQIDISKIIGYVCFSKFTFREIIFQTFQCLFAIRKVGQRKTLSSQRKIWLGLEESVFLENLDGKHFLKVVKNLEMSYYLLIISNLVLKLLIAIYIL
Ga0307511_100642191	3300030521	Ectomycorrhiza	MKILKINLGYVCFSEFTFRETTFQTFLCLFTIRKVGQRKTLSSQRKIWLGFQESVFLKNLGEKHFPEIVKKLKISYYLLIISNLIPKLLIAIYIYIYFLF
Ga0307511_102048841	3300030521	Ectomycorrhiza	MRQVVKEMILKKQKYLGYVCFPEFIFWEITFQTFLCLFDIKKVGQRKTLSSQRKLWLDFHKSVFLENLGGKHFPEVVKNLEMLYYLLIISNLILKLLIAIYILF
Ga0307512_103295061	3300030522	Ectomycorrhiza	LLDEVSRYDLGYVYFPESGFRETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGLQESVFLKNLDRKHFPEVVKNLKISYYLLIISNLVLKLLIAIYILF
Ga0307512_104337891	3300030522	Ectomycorrhiza	LWCVCFPESGFQETTFQIFLCLFAIRKVGQRKTLSSQRKIWLSFQKSVFLFILGGKHFPEVVKNLEMSYYLLIISILVLKPLIAM
Ga0307512_104508201	3300030522	Ectomycorrhiza	LEFIFWKITFQAFLCLFDIRKVGQRKIFSNQRKIWLGFQESVFLENLGGKHFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0307513_100078062	3300031456	Ectomycorrhiza	VVRFFFSSNSSLGYVCFLESGFRKTTFQTFLYLFAIRKVGQRKTLSRQRKIWFGFQESVFLENLDGKHFLEVVKNLEMSYYLLIISNLVLKLLIDIYIFFVLNIYFSISSLKI
Ga0307513_100278542	3300031456	Ectomycorrhiza	MSNLGYVCFPKSDFWKTTFQTFLYLFAIWKVGQSKTLSSQRKIWFSFQENVFLENLGGKHFLNVVKNLEMSYYLLIISNLILKLLIVIYIYIYI
Ga0307513_101982731	3300031456	Ectomycorrhiza	LSVLVILGYICFLEFTFREITFQTFLCLFAIRKVGQRKTLGQRKIWLDFQESVFLENLGEKHFLEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307513_103194571	3300031456	Ectomycorrhiza	MVKATSLLGYVFFPEFTFLETTFQIFLCLFDIRKVGQWKTLSNQWKIWLGFQESVFMENLGEKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYIYIYIYILF
Ga0307513_104955461	3300031456	Ectomycorrhiza	MRNYGYVCFPESGFRETTFQTFLCLFAIKKDGQQKTLSSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLLIISNLIHKLLIAIYILF
Ga0307513_108862791	3300031456	Ectomycorrhiza	LLDEVSRYDLGYVYFPETTFQTFLYLFAIRKVGQRKTLSSQRKIWLGLQESVFLKNLDRKHFPEVVKNLKISYYLLIISNLVLKLLIAIYIL
Ga0307509_100101529	3300031507	Ectomycorrhiza	MVKATSLLGYVFFPEFTFLETTFQIFLCLFDIRKVGQWKTLSNQRKIWLGFQESVFMENLGEKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYIYIVLNIYFLISSLKI
Ga0307509_100539112	3300031507	Ectomycorrhiza	LGHVYFLESGFREIIFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFLEIVKKLEMSYYLMIISNLILKLLIAIYILF
Ga0307509_100552154	3300031507	Ectomycorrhiza	MVKATSHLGYVCFPEFTFLETTFQIFLCLFDIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPEVVKNLEMSYYLLIISNLVLKLLI
Ga0307509_101708891	3300031507	Ectomycorrhiza	MFVFLKSGFWKTTFQTFLYLFAIRKVGQQKTLSYQRKIWFGFQESVFLKNLGEKHFPEVVKNLEMSYYLPIISNLVLKLLIAIYIYFLF
Ga0307509_102326091	3300031507	Ectomycorrhiza	VFKIPLGYVCFLESGFRETTFQTFLCLFAIRKVGQRKTLFNQSKIWLGFKKSVFLENLSGKHFPEVVKNLEISYYLLIISNLVLKLFIAIYILF
Ga0307509_103120642	3300031507	Ectomycorrhiza	MKKILPQLGYVYFLESGITFQTFLCLFVIRKVGQQKTLSSQRKIWLVFQESVFLKNLDGKHFLKVVKNLEMSYYLLIISNLILKLLIAIYILF
Ga0307509_103411512	3300031507	Ectomycorrhiza	MLLNIISLVGYVCFPESDFRETTFQTFLYLFAIRKVGQRKTLFSQRKIWLGFQESVFLKNLSGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307509_109046861	3300031507	Ectomycorrhiza	MFVFCFRESGFRKTIFQTFMCLFAIKKVGQQKTLSSQSKIWLGFQKSIFLKNLGGKHFPEVVENLEISYYLLIISNLILKLLITIYILF
Ga0307508_100099323	3300031616	Ectomycorrhiza	MSNLGYVCFPKSDFWKTTFQTFLYLFAIWKVGQSKTLSSQRKIWFSFQENVFLENLGGKHFLNVVKNLEMSYYLLIISNLILKLLIVIYIYIYLNIYFSISSLKI
Ga0307508_100323873	3300031616	Ectomycorrhiza	MFLAPSYIISESSNSLGYVCFPEFTFRETTFQTFLYLFVIRKVSQRKTLSSKRKIWLGFQESVFLENLSGKHFPEVVKNLEMSYYLLIISNLVLKLLIA
Ga0307508_100397642	3300031616	Ectomycorrhiza	LGHVYFLESGFREIIFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFLEIVKKLEMSYYLMIISNLILKLLIAI
Ga0307508_100598823	3300031616	Ectomycorrhiza	MKILKINLGYVCFSEFTFRKTTFQTFLYLFTIRKVGQRKTLSSQRKIWLGFQESVFLKNLGEKHFPEIVKKLKISYYLLIISNLIPKLLIAIYIYFVLNIYFLISFLKI
Ga0307508_100905111	3300031616	Ectomycorrhiza	MPLMSFYSLGYVCFPESGFWKIIFQNLFAIRKVGQRKTLSNQRKIWLGFQESVFLKNLDEKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307508_100914851	3300031616	Ectomycorrhiza	LLGYVCFSESGFQEITFQTFLCLFSIKKVGQRKTLSSQKKICLGFQESVFLKNLGGKHFSEVMKNLEMLYYLLIISNLVLKLLI
Ga0307508_102323591	3300031616	Ectomycorrhiza	MFVFCFRESGFWKTIFQTFLCLFAIRKVGQQKTLSSQSKIWLGFQKSIFLKNLGGKHFPEVVENLEISYYLLIISNLILKLLITIYILF
Ga0307508_104440571	3300031616	Ectomycorrhiza	MESGFRKTTFQTFLCLFFIRKVGQLKIFFSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLL
Ga0307508_105009252	3300031616	Ectomycorrhiza	MLLNIISLVGYVCFPESDFRETTFQTFMYLFAIRKVGQRKTLFSQRKIWLGFQESVFLKNLSGKHFPEVVKNLEMSYYLLIISNLVLKLLI
Ga0307514_100030748	3300031649	Ectomycorrhiza	MKLTLIFGCVCFPEFTFRKTTFQTFLCLFAIRNVGQRKTLSSQRKIWLGFQESVFLEYLDGKHFPEFVKNLEISYYLLIISNLILKLLIDIYILF
Ga0307514_100118878	3300031649	Ectomycorrhiza	VVRFFFSSNSSLGYVCFLESGFRKTTFQTFLYLFAIRKVGQRKTLSRQRKIWFGFQESVFLENLDGKHFLKVVKNLEMSYYLLIISNLVLKLLIDIYIFFVLNIYFSI
Ga0307514_100142053	3300031649	Ectomycorrhiza	MLLNIISLVGYVCFPESDFRETTFQTFLYLFAIRKVGQRKTLFSQRKIWLGFQESVFLKNLSGKHFPEVVKNLEMSYYLLIISNLVLKLLIA
Ga0307514_100175501	3300031649	Ectomycorrhiza	VCPFGYVCFLEFTFQETTFQTFLCLFAIKKVGQQKTLSSQRKIWLGFQESVFLENLGGNHFLEVVKNLEMSYYLLIISNLVLKFLIAIYILF
Ga0307514_103333791	3300031649	Ectomycorrhiza	LASKKLIFILVHLGYVCFPETTFRETTFQTFLCLFAIKKVDQRKTLSSQRKIWLGFQESVFLENLGGKHFLEVVKNLEMSYYLLIISNLVFKLLIAIYILF
Ga0307514_103676691	3300031649	Ectomycorrhiza	MKTVCFPEFTFREITFQTFLCLFVIRKVGQRKTLSSQRKIWLGFQESVFLKNLGGKHFSEFVKKLEMSYYLLIISNLVLKLLIAIYILF
Ga0307514_103845991	3300031649	Ectomycorrhiza	MVKATSHLGYVCFPEFTFLETTFQIFLCLFDIRKVDQQKTLSSQRKIWLGFQESVFLENLGGKHFPEVVKNLEMSYYLLIISNLVIKLL
Ga0307516_100089429	3300031730	Ectomycorrhiza	VVRFFFSSNSSLGYVCFLESGFRKTTFQTFLYLFAIRKVGQRKTLSRQRKNWFGFQESVFLENLDGKHFLEVVKNLEMSYYLLIISNLVLKLLIDIYIFFVLNIYFSISSLKI
Ga0307516_100856221	3300031730	Ectomycorrhiza	LIKSLLIYSYIHTFVKNNLKKTTMAISLRILYLGCVCFSESSFLETTFQTFLCLFAIRKVGQRKTLFSQRKIWLGFQESIFLLFLGGKHFPKVVKNLEMLYYLLIISNLVLKLLIAIYIL
Ga0307516_101053112	3300031730	Ectomycorrhiza	MKLRLCLFPGNWFPGNHRETTFQTFLCLFAIKKVGQRKTLSGQWKTKKNLVWFSGKCFSLILDGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307516_102710781	3300031730	Ectomycorrhiza	LIQDHVCFLESGFRKTTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPKVVKNLEISYYLLIISNLVLKLLIAIYI
Ga0307516_103067401	3300031730	Ectomycorrhiza	MFVFCFRESGFRKTIFQIFLCLFAIRKVGQRKTLSSQSKIWLGFQKSIFLKNLGGKHFPEVVENLEISYYLLIISNLILKLLITIYILF
Ga0307516_103217811	3300031730	Ectomycorrhiza	EFTFWKTIFQTFLCLFAIRKVGQHKTLFSQRKIWFGFQESVFLKNLGGKHFPEVVKNLEISYYLLIISNLILKLLITIYILF
Ga0307516_105014162	3300031730	Ectomycorrhiza	MSTPSPFLFCLLDFYLGHVCFPESGFRETTFQTFLCLFAIRKVSQRKILSSQRKIWLGFQESVFLENLSGKHFPEVVKSLEMSYYLLIISN
Ga0307516_105686281	3300031730	Ectomycorrhiza	MRQVVKEMILKKQKYLGYVCFPEFIFWEITFQTFLCLFDIKKVGQRKTLSSQRKLWLDFHKSVFLENLGGKHFPEVVKNLEMLYYLLIISNLILKL
Ga0307516_106454241	3300031730	Ectomycorrhiza	MYLGYVCFFEFTFRETTFQIFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLKNLDRKHFSEVVKNLEMSYYLLIISNLILKLLIAIYILF
Ga0307516_107411081	3300031730	Ectomycorrhiza	LGHVYFLESGFREIIFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFLEVVKKLEMSYYLMIISNLILKLLIAIYILF
Ga0307518_100251001	3300031838	Ectomycorrhiza	MAISLRILYLGCVCFSESSFLEITFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLLFFGGKHFPEVVKNLEMLYYLLIISNLILKLLIAIYILF
Ga0307518_101521151	3300031838	Ectomycorrhiza	MFVFCFLESGFRKIIFQTFLCLFAIRKVGQQKTLSSQSKIWLGFQESVFLENLGGKHFSEVVKNLEISYYLLIISTLVLKLLIAIYILF
Ga0307518_102896901	3300031838	Ectomycorrhiza	MRNYGYVCFLESGFREIIFQTFLCLFAIKKGGQQKTISSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLLIISNLVHKLLIAIYILF
Ga0325403_10014711	3300032354	Xylem	MADILYALGYVCFPEFTFRETTFQTFLCLFDIRKVGQRKILSSQRKIWLGFQESIFLKNLSGKHFLKVVKNLEMSYYLQIISNLVIKLLIAIYILF
Ga0325403_10508211	3300032354	Xylem	MILSYFHPSILGYVCFLKFTFREINFQTFLCLFAIRKVGQRKTLFSQRKIWLSFQESVFLENLGGKFFLEVLKNLEISYYLLIISNLVLKLFIAINILF
Ga0325401_10070426	3300032355	Xylem	MLMLILGYVCFSESGFFQTFLCLFATRKVGQRKILSSQRKIWLGFQKNVFLENLGVKYFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325401_10104825	3300032355	Xylem	MFVFLKSGFRKTTFQTFLCLFIFRKVGQWKTLSSQRKIWLSFQKSIFLKNLSGKHFLKVVKNLEISYYLLIISNLILKLLIAIYILF
Ga0325400_10303823	3300032374	Xylem	MSLNSFLGCVCFPESGFRETTFQTFLCLFAIMKVGQQKTLSGQKNLTWFPEKCFPFILGGKHFLEIVKNLEISYYLLIISNLILKLLIAIYILF
Ga0325405_100074822	3300032389	Xylem	MADILYALGYVCFPEFTFRETTFQIFLCLFDIRKVGQRKILSSQRKIWLGFQESIFLKNLSGKHFLKVVKNLEMSYYLQIISNLVIKLLIAIYILF
Ga0325405_100143929	3300032389	Xylem	QTFLCLFAIRKVGRQKTLSSQRKIWLGFQESVFLKNFGGKHFLEVVKNLEMSYYLLIISNLIFKLLIAIYIYIYIYIYFVLNIYFSISSLKI
Ga0325405_10015317	3300032389	Xylem	MKCYALFVFLASGFLETIFQIFLCLFIIRKVGQRKTLSGQRKIFYSQRKIGKRFPFILGEKHFLKVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325405_100164810	3300032389	Xylem	LLGYVYFLKSGFRETTFQTCLCLFVIKKVGQRKILLGFQESVFQENLGGKQFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325405_10037657	3300032389	Xylem	MILSYFHPGILSYICFLEFTFRETTFQTFMCLFAIRKVGQRKTLSSQRKIWLSFQESVFLKNLGGKYFLEVLKNLEISYHLLIISNLVLKLLIAINILF
Ga0325405_10733392	3300032389	Xylem	MSVLDYVCFLKFTFREITFQTFLCLFATKKVGQRKTLFSQRKIWLGFQESVFLENLGRKHFLEVMKNLEMSYYLLIISNFILKLLIAIYIYFVLNIYFLILSLKI
Ga0325404_10016447	3300032390	Xylem	MKCYALFVFLASGFLETIFQIFLCLFIIRKVGQRKTLSGQRKTFYSQRKIGKRFPFILGEKHFLKVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325404_10098367	3300032390	Xylem	MFVFWKVVGFWKTIFQTFPCLFTIRKVGQRKTFFNQRKIGLGFQESVFLKNLDGKHFLKVVKNLEISYYLLIISNLVLRFLIAIYILF
Ga0325404_10300504	3300032390	Xylem	MFVSRNSLSGKTTFQTFLYLFATGKVGEWKTLSRKIWLGYQECVFLKNLDGKHFLEVVKNLEMSYYLLIISNLILKLLIAIYILF
Ga0325404_10876321	3300032390	Xylem	LSGKYFSEVLKNFGYICFPEFTFREITFQSFLCLFDVRKVGQWKTLSSQRKIWLDFQESVFLKNLGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0325414_10049706	3300032741	Leaf	LDTSPTGSPNDPPSFLYLGFICFLEFIFWKITFQTFLCLFAIKKVHQRKTLSSQRKIWLGFQESVFLENLGGKHFPELVKKLEMLYYLLIISNLVLKFFIVIYILF
Ga0325414_10852682	3300032741	Leaf	MLILGYVCFSESGFFQTFLCLFATRKVGQRKILSSQRKIWLGFQKNVFLENLGVKYFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325402_10145617	3300033160	Xylem	MNKKKRKKFTYMLMLILGYVCFSESGFFQTFLCLFATRKVGQRKILSSQRKIWLGFQKNVFLENLGVKYFPEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325402_10675231	3300033160	Xylem	MSVLDYVCFLKFTFREITFQTFLCLFATKKVGQRKTLFSQRKIWLDFQESVFLENLGRKHFLEVMKNLEMSYYLLIISNFILKLLIAIYIY
Ga0307507_100255301	3300033179	Ectomycorrhiza	LIQDHVCFLESGFRETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPKVVKNLEISYYL
Ga0307507_100316961	3300033179	Ectomycorrhiza	MNAAILIKFLGYVCFPGFTFWKTTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLKNLDGKHFPEIMNNLEMSYYLLIISNLVLKLLIAIYIL
Ga0307507_100875181	3300033179	Ectomycorrhiza	MESGFRKTTFQTFLCLFFIRKVGQLKIFFSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLLIISNSVLKLLIAIYIY
Ga0307507_100876993	3300033179	Ectomycorrhiza	LTEKFLGYVCFPEFTFRETTFQIFLCLFAIRKVGQRKILSSQRKIWLGFQESVFLKNLGGKHFPEVVKNLKMSYYLLIISNLVLKLLIA
Ga0307507_101305741	3300033179	Ectomycorrhiza	LGYVYFLESGFREIIFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFLEIVKKLEMSYYLMIISNLILKLLIAIYILF
Ga0307507_101904721	3300033179	Ectomycorrhiza	MRNYGYVCFPESGFRETTFQTFLCLFAIKKDGQQKTLSSQRKIWLGFQESVFLENLGGKHFSEVVKNLEMSYYLLI
Ga0307507_104634421	3300033179	Ectomycorrhiza	MLLNIISLVGYVCFPESDFRETTFQTFLYLFAIRKVGQRKTLFSQRKIWLGFQESVFLKNLSGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIY
Ga0307507_106963611	3300033179	Ectomycorrhiza	LTESGFLEITFQTFLCLFVIRKVGQRKTLSSQRKIWFDFQKSIFFFILDRKHFLEVVKNLEMSYYLLIISNLILKLLIAIYIFFEYFFFNFIP
Ga0307510_100115962	3300033180	Ectomycorrhiza	MRNYGYVCFLESGFRKIIFQTFLCLFAIKKGGQQKTISSQRKIWLGFQESVFLENLGGKHFLEVVKNLEMSYYLLIISNLVHKLLIAIYILF
Ga0307510_100634126	3300033180	Ectomycorrhiza	VFVLPESGFRETTFQTFMCLFVIRKVGQRKTLSSQRKIWLGFQESVFLKNLGGKHFPEVMKNLECHYLLIISNLILKLLIAIYIL
Ga0307510_100851101	3300033180	Ectomycorrhiza	MKILKINLGYVCFSEFTFRKTTFQTFLCLFTIRKVGQRKTLSSQRKIWLGFQESVFLKNLGEKHFPEIVKKLKISYYLLIISNLIPK
Ga0307510_103518111	3300033180	Ectomycorrhiza	MVKATSHLGYVCFPEFTFLETTFQIFLCLFDIRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFPEVVKNLEMSYYLLIISNLIIKLLIAIYIYIY
Ga0325419_011184_2354_2617	3300034389	Leaf	MILSCYVCFPETTFQTFLCLFAIRKIGQRKSLSSQRKIWLGFQESVFLENLGGKHFPEVVKNLEMSYYLLIISNLILKLLIAIYILF
Ga0325419_031885_1125_1409	3300034389	Leaf	MLMLILGYVCFSESGFRETTFQTFLCLFATRKVGQRKILSSQRKIWLSFQKSVFLENLGVKYFLEVVKNLEISYYLLIISNLVLKLLIAIYILF
Ga0325419_041743_1902_2255	3300034389	Leaf	VQTRFSLGNAGCTRFQTNAYRHSGCVYFLKTGFQKIIFQTFLCLFSIRKVSQRKTLSGQRKTLSSQRKIWLGFQESVFLFFDEKHFQEVVKNLEMSCYLLIISNLILKLLIAIYILF
Ga0325419_090740_449_736	3300034389	Leaf	LFGVLGHVCFPESGFWETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENFGGKHFPEVVKNLEMSYYLLIISNLVRKLLIAIYIYILF
Ga0325421_048074_944_1261	3300034689	Leaf	MSVLDYVCFLKFTFREITFQTFLCLFATKKVGQRKTLFSQRKIWLGFQESVFLENLSRKHFLEVMKNLEMSYYLLIISNFILKLLIAIYIYFVLNIYFLILSLKI
Ga0325407_000864_449_775	3300034899	Xylem	LFGVLGHVCFPESGFWETTFQTFLCLFAIRKVGQRKTLSSQRKIWLGFQESVFLENFGGKHFPEVVKNLEMSYYLLIISNLVRKLLIAIYIYIYFVLNIYFSISSFKI
Ga0325409_077907_3_269	3300034901	Xylem	VFSFFGCVCFPESGFREITFQTFLCLFAVRKVGQRKTLSSQRKIWLGFQESVFLENLGGKHFSEVVKKLEMLFLLIISNLILKLFIAIY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098341

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences