NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098494

Metagenome / Metatranscriptome Family F098494

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098494
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 62 residues
Representative Sequence MPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAAKT
Number of Associated Samples 62
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 16.83 %
% of genes near scaffold ends (potentially truncated) 57.28 %
% of genes from short scaffolds (< 2000 bps) 69.90 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (63.107 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(26.214 % of family members)
Environment Ontology (ENVO) Unclassified
(91.262 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(44.660 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.30%    β-sheet: 33.33%    Coil/Unstructured: 62.37%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00196GerE 28.16
PF00072Response_reg 21.36
PF12840HTH_20 12.62
PF01875Memo 3.88
PF00144Beta-lactamase 3.88
PF07238PilZ 2.91
PF00156Pribosyltran 2.91
PF01649Ribosomal_S20p 1.94
PF05192MutS_III 1.94
PF00933Glyco_hydro_3 0.97
PF05188MutS_II 0.97
PF03795YCII 0.97
PF01624MutS_I 0.97
PF00498FHA 0.97
PF08327AHSA1 0.97
PF13533Biotin_lipoyl_2 0.97
PF12698ABC2_membrane_3 0.97
PF03702AnmK 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0249DNA mismatch repair ATPase MutSReplication, recombination and repair [L] 3.88
COG1355Predicted class III extradiol dioxygenase, MEMO1 familyGeneral function prediction only [R] 3.88
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 3.88
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 3.88
COG2367Beta-lactamase class ADefense mechanisms [V] 3.88
COG0268Ribosomal protein S20Translation, ribosomal structure and biogenesis [J] 1.94
COG1472Periplasmic beta-glucosidase and related glycosidasesCarbohydrate transport and metabolism [G] 0.97
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.97
COG23771,6-Anhydro-N-acetylmuramate kinaseCell wall/membrane/envelope biogenesis [M] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms63.11 %
UnclassifiedrootN/A36.89 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004152|Ga0062386_100097804All Organisms → cellular organisms → Bacteria2253Open in IMG/M
3300009518|Ga0116128_1014069All Organisms → cellular organisms → Bacteria2807Open in IMG/M
3300009518|Ga0116128_1071301All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1060Open in IMG/M
3300009519|Ga0116108_1059133Not Available1202Open in IMG/M
3300009548|Ga0116107_1068516Not Available1140Open in IMG/M
3300009548|Ga0116107_1069751Not Available1125Open in IMG/M
3300009549|Ga0116137_1069241All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1091Open in IMG/M
3300009549|Ga0116137_1104971All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium823Open in IMG/M
3300009552|Ga0116138_1099232Not Available809Open in IMG/M
3300009614|Ga0116104_1047506All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium949Open in IMG/M
3300009615|Ga0116103_1070243All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium940Open in IMG/M
3300009629|Ga0116119_1047484All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1118Open in IMG/M
3300009637|Ga0116118_1157669Not Available730Open in IMG/M
3300009639|Ga0116122_1055699All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1330Open in IMG/M
3300009640|Ga0116126_1022393All Organisms → cellular organisms → Bacteria2764Open in IMG/M
3300009641|Ga0116120_1293046Not Available504Open in IMG/M
3300010339|Ga0074046_10487344Not Available737Open in IMG/M
3300010379|Ga0136449_101354383Not Available1104Open in IMG/M
3300011064|Ga0138525_1052013Not Available561Open in IMG/M
3300011110|Ga0138578_1171665All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium925Open in IMG/M
3300014152|Ga0181533_1009159All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8059Open in IMG/M
3300014155|Ga0181524_10386588Not Available614Open in IMG/M
3300014494|Ga0182017_10797146Not Available570Open in IMG/M
3300017925|Ga0187856_1029876All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2613Open in IMG/M
3300017925|Ga0187856_1219361Not Available681Open in IMG/M
3300017926|Ga0187807_1222085Not Available615Open in IMG/M
3300017929|Ga0187849_1029561All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2849Open in IMG/M
3300017929|Ga0187849_1056831All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1797Open in IMG/M
3300017929|Ga0187849_1207875All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium761Open in IMG/M
3300017931|Ga0187877_1149439All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium940Open in IMG/M
3300017940|Ga0187853_10017726All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4029Open in IMG/M
3300017940|Ga0187853_10218274All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium886Open in IMG/M
3300017940|Ga0187853_10229587All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300017940|Ga0187853_10242378All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.830Open in IMG/M
3300017940|Ga0187853_10428806Not Available582Open in IMG/M
3300017941|Ga0187850_10028652All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3067Open in IMG/M
3300017943|Ga0187819_10075321All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2011Open in IMG/M
3300017943|Ga0187819_10226514All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1098Open in IMG/M
3300017961|Ga0187778_11293702Not Available513Open in IMG/M
3300017972|Ga0187781_10258561All Organisms → cellular organisms → Bacteria1233Open in IMG/M
3300017973|Ga0187780_10271918All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1189Open in IMG/M
3300017975|Ga0187782_10667058Not Available801Open in IMG/M
3300017998|Ga0187870_1309908Not Available529Open in IMG/M
3300018004|Ga0187865_1052753Not Available1624Open in IMG/M
3300018004|Ga0187865_1133035All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium885Open in IMG/M
3300018004|Ga0187865_1133036All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium885Open in IMG/M
3300018008|Ga0187888_1021069All Organisms → cellular organisms → Bacteria3425Open in IMG/M
3300018009|Ga0187884_10163927Not Available930Open in IMG/M
3300018015|Ga0187866_1079311All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1403Open in IMG/M
3300018016|Ga0187880_1282933Not Available720Open in IMG/M
3300018019|Ga0187874_10218190All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium789Open in IMG/M
3300018021|Ga0187882_1103102Not Available1215Open in IMG/M
3300018024|Ga0187881_10184182All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.896Open in IMG/M
3300018030|Ga0187869_10160393Not Available1112Open in IMG/M
3300018040|Ga0187862_10276233All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1070Open in IMG/M
3300018057|Ga0187858_10774099Not Available569Open in IMG/M
3300018062|Ga0187784_10071825All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2807Open in IMG/M
3300018062|Ga0187784_10354887All Organisms → cellular organisms → Bacteria1188Open in IMG/M
3300018062|Ga0187784_10565267All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium915Open in IMG/M
3300018086|Ga0187769_11180264Not Available579Open in IMG/M
3300018088|Ga0187771_10778306All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium812Open in IMG/M
3300018088|Ga0187771_10908921Not Available747Open in IMG/M
3300018090|Ga0187770_10809119Not Available750Open in IMG/M
3300018090|Ga0187770_11237660Not Available604Open in IMG/M
3300019284|Ga0187797_1669121All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1432Open in IMG/M
3300019284|Ga0187797_1729645Not Available682Open in IMG/M
3300025419|Ga0208036_1033383Not Available953Open in IMG/M
3300025472|Ga0208692_1029459All Organisms → cellular organisms → Bacteria1492Open in IMG/M
3300027825|Ga0209039_10014617All Organisms → cellular organisms → Bacteria4268Open in IMG/M
3300027854|Ga0209517_10242602All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1083Open in IMG/M
3300027854|Ga0209517_10489826Not Available672Open in IMG/M
3300027905|Ga0209415_10882564Not Available611Open in IMG/M
3300029889|Ga0246001_1071636Not Available677Open in IMG/M
3300032892|Ga0335081_11656125Not Available700Open in IMG/M
3300033402|Ga0326728_10002977All Organisms → cellular organisms → Bacteria → Acidobacteria54575Open in IMG/M
3300033402|Ga0326728_10010751All Organisms → cellular organisms → Bacteria21257Open in IMG/M
3300033402|Ga0326728_10040058All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus7352Open in IMG/M
3300033402|Ga0326728_10133674All Organisms → cellular organisms → Bacteria2776Open in IMG/M
3300033402|Ga0326728_10613664Not Available843Open in IMG/M
3300033405|Ga0326727_10130847All Organisms → cellular organisms → Bacteria3081Open in IMG/M
3300033405|Ga0326727_10719356All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium792Open in IMG/M
3300033405|Ga0326727_11182589Not Available535Open in IMG/M
3300033977|Ga0314861_0000219All Organisms → cellular organisms → Bacteria99238Open in IMG/M
3300033977|Ga0314861_0000406All Organisms → cellular organisms → Bacteria71530Open in IMG/M
3300033977|Ga0314861_0000475All Organisms → cellular organisms → Bacteria64720Open in IMG/M
3300033977|Ga0314861_0001500All Organisms → cellular organisms → Bacteria29865Open in IMG/M
3300033977|Ga0314861_0003779All Organisms → cellular organisms → Bacteria → Acidobacteria14043Open in IMG/M
3300033977|Ga0314861_0005596All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae10411Open in IMG/M
3300033977|Ga0314861_0009164All Organisms → cellular organisms → Bacteria7294Open in IMG/M
3300033977|Ga0314861_0040134All Organisms → cellular organisms → Bacteria2690Open in IMG/M
3300033977|Ga0314861_0044818All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2502Open in IMG/M
3300033977|Ga0314861_0059463All Organisms → cellular organisms → Bacteria2080Open in IMG/M
3300033977|Ga0314861_0060055All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2067Open in IMG/M
3300033977|Ga0314861_0063014All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2002Open in IMG/M
3300033977|Ga0314861_0122323All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1301Open in IMG/M
3300033977|Ga0314861_0219059All Organisms → cellular organisms → Bacteria890Open in IMG/M
3300033982|Ga0371487_0204562All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300033982|Ga0371487_0313115All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia702Open in IMG/M
3300033983|Ga0371488_0087185All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1770Open in IMG/M
3300033983|Ga0371488_0432448Not Available604Open in IMG/M
3300034091|Ga0326724_0096928All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1944Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland26.21%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland16.50%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland16.50%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil12.62%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland11.65%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil5.83%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.91%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.94%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.97%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.97%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.97%
PeatEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009548Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100EnvironmentalOpen in IMG/M
3300009549Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100EnvironmentalOpen in IMG/M
3300009552Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_150EnvironmentalOpen in IMG/M
3300009614Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_150EnvironmentalOpen in IMG/M
3300009615Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009637Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009640Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40EnvironmentalOpen in IMG/M
3300009641Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011064Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 2 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011110Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014494Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaGEnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017926Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017998Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150EnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018008Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018015Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018021Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150EnvironmentalOpen in IMG/M
3300018024Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018057Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019284Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025419Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025472Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300029889Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cmEnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033977Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75EnvironmentalOpen in IMG/M
3300033982Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fractionEnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062386_10009780443300004152Bog Forest SoilMPSPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPTRSKGAKT*
Ga0116128_101406923300009518PeatlandMPSPLPLGTTINITINLPVELTKVPIELSCLGRVVRKSRTGKNQGIGAIIEDFKLRPLRLKAAKT*
Ga0116128_107130113300009518PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAAKT*
Ga0116108_105913313300009519PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT*
Ga0116107_106851623300009548PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPT
Ga0116107_106975123300009548PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCQGRVVRKSRMGKNQGIGAIIEDFELRASRLKAAKTLPS
Ga0116137_106924113300009549PeatlandGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT*
Ga0116137_110497123300009549PeatlandGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPTRSKGAKT*
Ga0116138_109923213300009552PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAAKT*
Ga0116104_104750623300009614PeatlandVMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAAKT*
Ga0116103_107024323300009615PeatlandGLLVVMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT*
Ga0116119_104748413300009629PeatlandSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT*
Ga0116118_115766923300009637PeatlandLLVVIPRHLPLGTTINVTINLPVDLTKVPVKLTCLGRVVRKSPMGKNEGISAIIEDFSLQPSRRKAAKA*
Ga0116122_105569923300009639PeatlandVIPNPLPLGTTINVTINLPVELTKVPVELSFLGRVVRKSRLGKDQGISAIIEDFQLRPVRKKAAKT*
Ga0116126_102239313300009640PeatlandVVPSPLPVGTTINVTIKLPIELTKVPVELSCVGRVVRKSRMGENQGIAAIIEDFELRHSRLKAA
Ga0116120_129304623300009641PeatlandGLLVLIPKHLPVGTTINVTINLPVDLTKVPVRLTCKGRVVRKSSMGKSAGISAIIEDFKLRPSRRKSAKA*
Ga0074046_1048734423300010339Bog Forest SoilLVVMPSALPLGTTINVTIDLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKVAKT*
Ga0136449_10135438313300010379Peatlands SoilVLPTHLPLGTTINVTIHLPVELTKVPVELSCLARVVRKSRKGKGQGISAIIEDFHIRPLPQKGGKT*
Ga0138525_105201323300011064Peatlands SoilVLPTHLPLGTTINVTIHLPVELTKVPVELSCLARVVRKSSKGKGQGISAIIEDFHIRPLPQKGGKT*
Ga0138578_117166513300011110Peatlands SoilTINVTINLPVDLTKVPVKLTCMGRVVRKNPKGKSAGVSAIIEDFKLRPSRRKSAKA*
Ga0181533_100915953300014152BogMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLRAART*
Ga0181524_1038658813300014155BogMPTPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPKRLKAAKT*
Ga0182017_1079714613300014494FenVIPNPLPLGTTINVTINLPIELTKVPVELSFLGRVVRKSRLGKDQGISAIIEDFQLRPARKKAAKT*
Ga0187856_102987623300017925PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLRAART
Ga0187856_121936113300017925PeatlandISSSGLLVVIPKHLPLGTTINVTINLPVDLTKVPVKLTCLGRVVRKSPMGKNEGISAIIEDFSLQPSRRKAAKA
Ga0187807_122208513300017926Freshwater SedimentSGLLVVIPKHLPLGTTINVTINLPVEITKVPVELSCLGRVVRKSSMGKGQGISAIIEDFQLRPSPLKAAKA
Ga0187849_102956133300017929PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAA
Ga0187849_105683133300017929PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT
Ga0187849_120787513300017929PeatlandTINVTINLPIELTKVPVELSCLGRVVRKSRMGTNQGIGAIIEDFQLRPKRLKAAKT
Ga0187877_114943913300017931PeatlandSGLLVVMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT
Ga0187854_1018327723300017938PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGA
Ga0187853_1001772623300017940PeatlandMPSPLPLGTTINITINLPVELTKVPIELSCLGRVVRKSRTGKNQGIGAIIEDFKLRPLRLKAAKT
Ga0187853_1021827413300017940PeatlandVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT
Ga0187853_1022958723300017940PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAII
Ga0187853_1024237813300017940PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIE
Ga0187853_1042880623300017940PeatlandVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLRAART
Ga0187850_1002865243300017941PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRLKAAKT
Ga0187819_1007532113300017943Freshwater SedimentVVIPKHLPLGTTINVTINLPVEITKVPVELSCLGRVVRKSSMGKGQGISAIIEDFQLRPSPLKAAKA
Ga0187819_1022651413300017943Freshwater SedimentLVVIPNHLPLGTTINVTIQLPSELTRVPVELACQGRVVRKSRMAIGQGISAIIEDFELRPSPQKAGKT
Ga0187778_1129370223300017961Tropical PeatlandSGLLVLIPNHLPLGTTINVTIHLPIELTRVPVELSCLGRVVRKRRMAEGQGISAVIEDFQLRPSPQVAGKS
Ga0187781_1025856113300017972Tropical PeatlandVIPRHLPLGTTINVTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAKA
Ga0187780_1027191833300017973Tropical PeatlandMPTPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQL
Ga0187782_1066705813300017975Tropical PeatlandLPIGTSINVTINLPVDLTKVPVELSCMGRVVRKSPMVKSEGISAIIEDFNLRPSRRKAAK
Ga0187870_130990813300017998PeatlandLLVVIPNHLPLGTTINITIHLPVELTKVPVELSCQGRVVRKSRMTKGQGISAIIEDFELRPLPQKARKT
Ga0187865_105275323300018004PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIG
Ga0187865_113303513300018004PeatlandGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPTRSKGAKT
Ga0187865_113303613300018004PeatlandGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLKAAKT
Ga0187888_102106963300018008PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIG
Ga0187884_1016392713300018009PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAIIED
Ga0187866_107931123300018015PeatlandVIPNPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRLGKDQGISAIIEDFQLRPARKKAAKT
Ga0187880_128293313300018016PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQL
Ga0187874_1021819013300018019PeatlandIGTTINVTINLPVDVTKVPVKLTCMGRVVRKSPVGKGEGVSAIIEDFKLRPSRRKAATA
Ga0187882_110310223300018021PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCQGRVVRKSRMGKNQGIGAIIEDFELRASRLKAAKTLPSSTAPAGTWG
Ga0187881_1018418223300018024PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLR
Ga0187869_1016039323300018030PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAI
Ga0187862_1027623313300018040PeatlandNVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPTRLRAART
Ga0187858_1077409923300018057PeatlandVIPNPLPLGTTINVTINLPVELTKVPVELSFLGRVVRKSRLGKDQGISAIIEDFQLRPVR
Ga0187784_1007182513300018062Tropical PeatlandTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAKA
Ga0187784_1035488733300018062Tropical PeatlandVIPRHLPLGTTINVTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQ
Ga0187784_1056526723300018062Tropical PeatlandSSGLLVVIPKRLPLGTTINVTINLPVDLTKVPVKLTCMGRVVRKSPMGKSQGISAIIEDFNLRPSRRKAAKA
Ga0187769_1118026423300018086Tropical PeatlandIPKPLPLGTTINVTIKLPVELTKVPVQLSCLGRVVRKTRVGKGQGISAIIEDFQIRPSRQKAAKA
Ga0187771_1077830623300018088Tropical PeatlandGTTINVTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAKA
Ga0187771_1090892123300018088Tropical PeatlandGTTINVTINLPVELTKAPVELTCQGRVVRKSRMGKGQGISAIIEDFQLRPSRQKAVKT
Ga0187770_1080911913300018090Tropical PeatlandLVVIPRHLPLGTTINVTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAKA
Ga0187770_1123766013300018090Tropical PeatlandMPSPLPLGTTINVTINLPIELTNVPVELSCLGRVVRKSRKGKNQGIAAIIEDFQLRPSR
Ga0187797_166912113300019284PeatlandSPLPLGTTINVTINLLVELTKVPVKLSCQGRVVRKSRMGKNQGIGAIIEDFQLRPSSPKAAKT
Ga0187797_172964523300019284PeatlandLPLGTTINVTIHLPIELTKVPVELSCLGRVVRKSRVGKGQGISAIIEDFQLRPSRQKAAK
Ga0208036_103338323300025419PeatlandMPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPSRL
Ga0208692_102945923300025472PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPTRSKGAKT
Ga0209039_1001461743300027825Bog Forest SoilMPSPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPTRSKGAKT
Ga0209517_1024260213300027854Peatlands SoilDVTIHLPIELTKVPVELSCVARVVRKSRRGKGQGISAIIEDFQLRPAPPKPGKT
Ga0209517_1048982623300027854Peatlands SoilLLVLIPKHLPIGTTINVTINLPVDLTKVPVRLTCKGRVVRKSSMGKSTGISAIIEDFKLRPSRRKSAKA
Ga0209415_1088256423300027905Peatlands SoilLGTTINVTIHLPVELTKVPVELSCLARVVRKSRKGKGQGISAIIEDFHIRPLPQKGGKT
Ga0246001_107163623300029889PeatPKHLPIGTTINVTINLPVDLTKVPVRLTCKGRVVRKSSMGKSAGISAIIEDFKLRPSRRKSAKA
Ga0335081_1165612523300032892SoilISSSGLLVVIPKHLPLGTTINVTINLPVELTKVPVELTCLGRVVRKSPMGKNEGISAIIEDFNLRPSRRKAATA
Ga0326728_10002977353300033402Peat SoilMPTPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQLRPKRLKAAKT
Ga0326728_10010751103300033402Peat SoilVIPNPVPLGTTINVTINLPIELTKVPVELSCLGRVIRKSRTGKGQGISAIIEDFQLRPSGQKAART
Ga0326728_1004005843300033402Peat SoilVIPKRLPIGTTINVTINLPVELTKVPVELSCLGRVVRKSSMGKGQGISAIIEDFQLRPSPLKAGKA
Ga0326728_1013367423300033402Peat SoilMPSPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPMRSKGAKT
Ga0326728_1061366423300033402Peat SoilVMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGA
Ga0326727_1013084773300033405Peat SoilMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDF
Ga0326727_1071935623300033405Peat SoilGTTINVTINLPLDVTKVPVKLTCMGRVVRKSPVGKSEGVSAIIEDFKLRPSRRKPAKA
Ga0326727_1118258923300033405Peat SoilTSINVTINLPIEVTKVPVELSCRGRVVRKSRMGKNQGIGAIIEDFELRPTRPRAAKT
Ga0314861_0000219_70921_711213300033977PeatlandVIPNSVPLGTTINVTIHLPVELTKVPVELTCLGRVVRKSRIGKGQGISAVIEDFQLRPSPQKTSKA
Ga0314861_0000406_7298_74983300033977PeatlandVIPKPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKGEGIAAIIEDFQLRASRQRAGKT
Ga0314861_0000475_13400_136003300033977PeatlandVIPNSVPIGTTINVTINLPVELTKVPVELSCLGRVVRKSRMGKGQGISAIIEDFQLRPPRQKAAKT
Ga0314861_0001500_4010_42133300033977PeatlandVVIPNRLPLGTTINVTIHLPPELTRVPVELTCQGRVVRKSRTAKGQGISAVIEDFELRPWLQKAGKT
Ga0314861_0003779_9368_95533300033977PeatlandVPLGTTINVTINLPVELTKAPVELTCQGRVVRKSRMGKGQGISAIIEDFQLRPSRQKAVK
Ga0314861_0005596_1738_19383300033977PeatlandVIPDPLPLGTRINVTIQLPIELTKVRVELCCRGRVVRKSRMGNGQGISAIIEDFQLRPSRQKAAKT
Ga0314861_0009164_1951_21483300033977PeatlandMPSPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAIIEDFQVRPSRLKKAKT
Ga0314861_0040134_813_10133300033977PeatlandVLPNPLPLGTTINVTINLPVELTKVPVELSCLGRVVRKSRIGKGQGISAIIEDFQLRASRQKAGKT
Ga0314861_0044818_1210_14103300033977PeatlandVIPKPLPLGTTINVTIKLPVELTKVPVQLSCLGRVVRKTRVGKGQGISAIIEDFQLRPSRQKAGKT
Ga0314861_0059463_87_2723300033977PeatlandLPLGTTINVTINLPIELTKVPVELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAK
Ga0314861_0060055_1128_13253300033977PeatlandMPSPLPLGTAINVTINLPIELTKVPVELSCLGRVVRKTRMGKNQGIGAIIEDFQLRPSRRKAVKT
Ga0314861_0063014_1627_18273300033977PeatlandVIPNPLPLGTSIDVTIHLPIELTKVPVELSCRGRVVRKSRMGKGQGISAIIEDFQLRPSRQKAAKT
Ga0314861_0122323_720_9173300033977PeatlandMPSPLPLGTIINVTINLPIELTKVPVKLSCQGRVVRKSRLGANQGIGAIIEDFQLRPARAKAAKS
Ga0314861_0199931_3_1373300033977PeatlandMIPRHLPLGTTINVTINLPIELTKVPVELSCKARVIRKSPMGKGQ
Ga0314861_0219059_161_3613300033977PeatlandVIPNPLPLGTRINVTIQLPIELTKVPVELCCRGRVVRKSRMGKGQGISAIIEDFQLRPLRQKAAKT
Ga0371487_0204562_478_6783300033982Peat SoilVIARHLPLGTTINVTINLPIELTKVPMELSCKARVVRKSPMGKGQGISAIIEDFQIRPSRQKAAKA
Ga0371487_0313115_2_1753300033982Peat SoilMLGTTINVTINLPIELTKVPVELSCMGRVVRKSPVGKGQGISAIIEDFQLRPSRKKA
Ga0371488_0087185_1216_14133300033983Peat SoilMPTPLPLGTTINVTINLPIELTKVPVELSCLGRVVRKSRMGKNQGIGAVIEDFQLSPMRSKGAKT
Ga0371488_0432448_454_6033300033983Peat SoilINVTIHLPIELTKVPVELSCMGRVVRKSRTGKGQGISAIIEDFQLRPLR
Ga0326724_0096928_512_7123300034091Peat SoilVIPNPLPLGTTINVTINLPVALTKVPVELSCLGRVVRKSRVGKGQGISAIIEDFQLRPSRQKAAKT

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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