NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F098545

Metagenome / Metatranscriptome Family F098545

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F098545
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 63 residues
Representative Sequence RGYAPGLALQVSGVNEVFWSGLNGVLLLLFCLWLLDRLSDQLVGDFVRGVYTNKNMPYNR
Number of Associated Samples 78
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 42.72 %
% of genes from short scaffolds (< 2000 bps) 98.06 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.146 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(66.990 % of family members)
Environment Ontology (ENVO) Unclassified
(91.262 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(76.699 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.55%    β-sheet: 0.00%    Coil/Unstructured: 45.45%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.15 %
All OrganismsrootAll Organisms4.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005467|Ga0070706_101030331Not Available758Open in IMG/M
3300005467|Ga0070706_101916105Not Available538Open in IMG/M
3300009092|Ga0105250_10223562Not Available799Open in IMG/M
3300009973|Ga0105136_103651Not Available805Open in IMG/M
3300009980|Ga0105135_111479Not Available689Open in IMG/M
3300009981|Ga0105133_127875Not Available528Open in IMG/M
3300009989|Ga0105131_102548Not Available1242Open in IMG/M
3300009990|Ga0105132_104397Not Available977Open in IMG/M
3300009990|Ga0105132_115455Not Available703Open in IMG/M
3300009992|Ga0105120_1043237Not Available560Open in IMG/M
3300009995|Ga0105139_1010470Not Available1196Open in IMG/M
3300010371|Ga0134125_12010466Not Available628Open in IMG/M
3300010371|Ga0134125_12023587Not Available626Open in IMG/M
3300010399|Ga0134127_11772728All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum693Open in IMG/M
3300010401|Ga0134121_11509330Not Available688Open in IMG/M
3300014325|Ga0163163_12008178Not Available638Open in IMG/M
3300015270|Ga0182183_1066007Not Available567Open in IMG/M
3300015278|Ga0182099_1007822Not Available913Open in IMG/M
3300015278|Ga0182099_1021450Not Available708Open in IMG/M
3300015280|Ga0182100_1030195Not Available749Open in IMG/M
3300015280|Ga0182100_1092157Not Available517Open in IMG/M
3300015309|Ga0182098_1058247Not Available663Open in IMG/M
3300015309|Ga0182098_1061236Not Available652Open in IMG/M
3300015309|Ga0182098_1073270Not Available614Open in IMG/M
3300015310|Ga0182162_1012898Not Available1077Open in IMG/M
3300015310|Ga0182162_1108385Not Available539Open in IMG/M
3300015311|Ga0182182_1047261All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum703Open in IMG/M
3300015312|Ga0182168_1033708Not Available836Open in IMG/M
3300015316|Ga0182121_1036493Not Available852Open in IMG/M
3300015317|Ga0182136_1087853Not Available605Open in IMG/M
3300015319|Ga0182130_1057005Not Available691Open in IMG/M
3300015320|Ga0182165_1052786Not Available743Open in IMG/M
3300015320|Ga0182165_1120893Not Available545Open in IMG/M
3300015325|Ga0182148_1031659Not Available863Open in IMG/M
3300015325|Ga0182148_1085422Not Available618Open in IMG/M
3300015326|Ga0182166_1079721Not Available631Open in IMG/M
3300015326|Ga0182166_1112764Not Available556Open in IMG/M
3300015327|Ga0182114_1162173Not Available501Open in IMG/M
3300015328|Ga0182153_1042748Not Available803Open in IMG/M
3300015328|Ga0182153_1106630Not Available580Open in IMG/M
3300015329|Ga0182135_1084856Not Available638Open in IMG/M
3300015330|Ga0182152_1051285Not Available766Open in IMG/M
3300015333|Ga0182147_1112724Not Available596Open in IMG/M
3300015335|Ga0182116_1109535Not Available624Open in IMG/M
3300015339|Ga0182149_1067798Not Available735Open in IMG/M
3300015339|Ga0182149_1116003Not Available597Open in IMG/M
3300015339|Ga0182149_1117410All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum594Open in IMG/M
3300015340|Ga0182133_1157678Not Available549Open in IMG/M
3300015348|Ga0182115_1149041Not Available749Open in IMG/M
3300015348|Ga0182115_1243757Not Available572Open in IMG/M
3300015349|Ga0182185_1169668Not Available654Open in IMG/M
3300015349|Ga0182185_1191473Not Available617Open in IMG/M
3300015350|Ga0182163_1229911Not Available581Open in IMG/M
3300015350|Ga0182163_1263738Not Available540Open in IMG/M
3300015350|Ga0182163_1263944Not Available539Open in IMG/M
3300015352|Ga0182169_1051105Not Available1241Open in IMG/M
3300015352|Ga0182169_1139227Not Available789Open in IMG/M
3300015353|Ga0182179_1005957Not Available2281Open in IMG/M
3300015353|Ga0182179_1215326Not Available614Open in IMG/M
3300017421|Ga0182213_1150601Not Available655Open in IMG/M
3300017422|Ga0182201_1013392Not Available1089Open in IMG/M
3300017432|Ga0182196_1133679Not Available531Open in IMG/M
3300017435|Ga0182194_1070962Not Available671Open in IMG/M
3300017439|Ga0182200_1070127Not Available677Open in IMG/M
3300017445|Ga0182198_1118919Not Available620Open in IMG/M
3300017447|Ga0182215_1081606Not Available709Open in IMG/M
3300017691|Ga0182212_1063318Not Available817Open in IMG/M
3300020023|Ga0182178_1010771Not Available651Open in IMG/M
3300020223|Ga0182118_109258Not Available586Open in IMG/M
3300025918|Ga0207662_10407793Not Available923Open in IMG/M
3300028049|Ga0268322_1029358Not Available629Open in IMG/M
3300028050|Ga0268328_1067888All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum513Open in IMG/M
3300028053|Ga0268346_1017095Not Available679Open in IMG/M
3300028053|Ga0268346_1018617Not Available663Open in IMG/M
3300028055|Ga0268338_1019233Not Available658Open in IMG/M
3300028055|Ga0268338_1020875Not Available641Open in IMG/M
3300028142|Ga0268347_1011070Not Available714Open in IMG/M
3300028151|Ga0268308_1027648Not Available538Open in IMG/M
3300028152|Ga0268336_1013319Not Available652Open in IMG/M
3300028152|Ga0268336_1020515Not Available573Open in IMG/M
3300028153|Ga0268320_1015600Not Available615Open in IMG/M
3300028246|Ga0268351_1009340Not Available925Open in IMG/M
3300028262|Ga0268310_1009644Not Available864Open in IMG/M
3300028466|Ga0268321_101733Not Available861Open in IMG/M
3300028477|Ga0268309_1013627Not Available579Open in IMG/M
3300028525|Ga0268305_106033Not Available626Open in IMG/M
3300028529|Ga0268311_1001360All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum1275Open in IMG/M
3300032466|Ga0214503_1065990Not Available1103Open in IMG/M
3300032467|Ga0214488_1061433Not Available832Open in IMG/M
3300032502|Ga0214490_1062581Not Available849Open in IMG/M
3300032502|Ga0214490_1148329Not Available530Open in IMG/M
3300032689|Ga0214497_1096968Not Available642Open in IMG/M
3300032760|Ga0314754_1026074Not Available922Open in IMG/M
3300032812|Ga0314745_1039351Not Available1012Open in IMG/M
3300032823|Ga0314723_1042031Not Available875Open in IMG/M
3300032875|Ga0314737_1045425Not Available763Open in IMG/M
3300032976|Ga0314752_1028106Not Available1056Open in IMG/M
3300033526|Ga0314761_1026823Not Available1219Open in IMG/M
3300033526|Ga0314761_1044922Not Available970Open in IMG/M
3300033530|Ga0314760_1030470Not Available1299Open in IMG/M
3300033532|Ga0314767_1081225Not Available803Open in IMG/M
3300033535|Ga0314759_1251571Not Available560Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere66.99%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere16.50%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated7.77%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.88%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.94%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.97%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.97%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009973Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009992Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015278Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015320Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015339Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017435Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017691Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020023Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_22AUG2016_LD2 MGHost-AssociatedOpen in IMG/M
3300020223Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_31MAY2016_LD2 MGHost-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028049Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028053Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028055Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028151Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028246Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_18SEP2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028466Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028525Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028529Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032466Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032467Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_31MAY2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032502Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032689Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032760Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032812Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032823Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032875Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032976Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_07AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033526Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033530Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033532Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_18SEP2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300033535Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070706_10103033113300005467Corn, Switchgrass And Miscanthus RhizosphereLNNLKYGYAPGLALQVSGVNEIFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATIRTQRKA*
Ga0070706_10191610523300005467Corn, Switchgrass And Miscanthus RhizosphereLQVSGVSDFFGNGFDGVLLLLSRLRLRNRFGDQLADGFARGVYTYEKMPCRVRTKLVHGRS*
Ga0105250_1022356213300009092Switchgrass RhizosphereMHNLNYGYAPGLALQVRGVNKVCWSVLNGDLLLLLCSWRLDRLNDQLVDSFVRGVYTNKI
Ga0105136_10365123300009973Switchgrass AssociatedYAPRLALQVSGVNDFFGSGFDCVLLLLSCLWLLDRLSNQLVDCFVRGVYTNKNMPCTIRTQCNA*
Ga0105135_11147913300009980Switchgrass AssociatedPGLALQVSGVNEVFWSVLNGVLLRLFCSWLLDRLSDQLAGDFVRGVYTNKNMPCTIRTQCNA*
Ga0105133_12787523300009981Switchgrass AssociatedVNEIFWSGLNGDLLRLFCSWLLDRLSDQLAGDFVRGVYTNKNMPCTIRTQCNA*
Ga0105131_10254823300009989Switchgrass AssociatedMHNLNYGYAPGLALQVSGVNKVCWSVLNGVLLLLSCSWLLDRLNDQLVGDFARGVYTNKICHATVRTQSKA*
Ga0105132_10439713300009990Switchgrass AssociatedPGLALQVSGVSDFFESVFDCVLLLFSRLRLLDRLGNQLVGDFGRGVYTNKNMPCTIRTQCNA*
Ga0105132_11545513300009990Switchgrass AssociatedLNYGYAPGLALQVSGVNENLWSGLNGVLLRLFCSWLLDRLSDQLVGDFVRGVYTNKICHATIRTQCNA*
Ga0105120_104323713300009992Switchgrass AssociatedMGYAPGLALQVSGVNEVFWSVLNGVLLLLSRLRLLDWLGDQLVGDFVRGVYTNKNMPCNS
Ga0105139_101047013300009995Switchgrass AssociatedIITLNTENRGYAPGLALQVSGVNENLWSGLNGVLLRLFCSWLLDRLSYQLKGDLVRGVYTNKNMPCTN*
Ga0134125_1201046613300010371Terrestrial SoilLNNLNYGYAPELALQVSGVNENLWSGLNGVLLRLFCSWLLDRLSDQLAGDFVHGVYTNKNMPCNR*
Ga0134125_1202358713300010371Terrestrial SoilLNKLNYGYAPGLALQVSGVNEVCLSGLNGVLLLLFGSWLLDRLSDQLAGDFVRGVYTNKNMPCTIRTQRNA*
Ga0134127_1177272813300010399Terrestrial SoilLNNLKYGYAPGLALQVSGVNEIFWSGLNSALLRLFCSWLLDRLSDQLVGDFVRGVYTNKKNMPCNN*
Ga0134121_1150933013300010401Terrestrial SoilMGYAPGLALQVSGVSNFFGSGLDYVLLLLSRLRLLDRLGDQLVGDFVRGVYTNQNMPCNS
Ga0163163_1200817813300014325Switchgrass RhizosphereMGYAPGLALQVSGVNEVFWSVLNGILLLLFCLWLLDRLSDQLVDSFDRGFYTYEKDVMHALG*
Ga0182183_106600713300015270Switchgrass PhyllosphereMHNTLNITWSNENKGYAPGLALQVSGVNDFFRSVLDCVFLLLSRLRLLDRLSDQLVGSFVRGVYTNKDMPCNN*
Ga0182099_100782223300015278Switchgrass PhyllosphereHIYLNKHQYTEIMGYAPGLALQVSGVSNFFGSGLDCVLLLLSCLRLLDRLGDKLVGDFVRGVYTNNKMPCNS*
Ga0182099_102145013300015278Switchgrass PhyllosphereLNNLKYGYAPGLALQVNGVNKAFWSGLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPCNN*
Ga0182100_103019513300015280Switchgrass PhyllosphereMGHAPGLALQVSGVNEVFWSVLNGVLLLLSRLRLLDQFSYQLVDGFVRGV*
Ga0182100_109215713300015280Switchgrass PhyllosphereLNNLNYGYAPGLALQVSGVNEVFWSGLNGDLLLLLCSWLLDRLNGQLVDSFVHGVYTNKICHATVRIWCNA*
Ga0182098_105824713300015309Switchgrass PhyllosphereMGYASGHALQVNGVSNFFGSGLDCVVLLLSRLRLLDRLGDQLVGDFIRGVYTNKNMPCNS
Ga0182098_106123613300015309Switchgrass PhyllosphereLNNLNYGYAPGLALQVSGVNEVCWSGLNGVLLLLFGSWLLDRLSDQLAGDFVRVLYTNKNMPCTIRTQRIA*
Ga0182098_107327013300015309Switchgrass PhyllosphereMHNLNYGYAPGLALQVSGVNKVSGGVLNGDLLLLLCSWQLDRLNDQLVDSFVRSVYTNKI
Ga0182162_101289813300015310Switchgrass PhyllosphereMHNLNYGYAPGLALQVSGVNKVFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATVRTQSNAYVLTMRKPKLKHLA*
Ga0182162_110838513300015310Switchgrass PhyllosphereNNLNYGYAPGLALQVSGVNKVCWSVLNGDLLLLSCSWLLDRLSDQLVGDFVRGVYTNKNMPCTIRTQCNA*
Ga0182182_104726113300015311Switchgrass PhyllosphereMLNIENRGYAPGLALQVSGVNEVFWSGLNGVLLLLFCSWLLDRLRDQLAGDFVRGFYTNKNMPCTIRTHCNA*
Ga0182168_103370813300015312Switchgrass PhyllosphereMGHAPGLALQVSGVNEVFWSVLNGVLLLLCRLRLLDLFSYQLVDGFVRGV*
Ga0182120_112226913300015315Switchgrass PhyllosphereLNTENRGYAPGLALQVRGVSNFFASVLTFIFLLLSRLRLLDRLSDQLVGGFVRGVYTYEKEMPCND*
Ga0182121_103649313300015316Switchgrass PhyllosphereAPGLALQISGVNEVFWSVLNGVLLRLSCSWLLDRLSDQLVGDFIRGVYTNKICHATIRTQCDA*
Ga0182136_108785323300015317Switchgrass PhyllosphereLNTENRGYAPGLALQVSGVNEIFRSGLNGDLQLLFCLWLLDRLSDQLVGDFVRGVYTNKNMPCNS*
Ga0182130_105700513300015319Switchgrass PhyllosphereGYAPGLALQVSGVSNFLGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNS*
Ga0182165_105278613300015320Switchgrass PhyllosphereLNNLNYGYAPGLVLQVSGVNEVFWSGLNGVLLLLFCSWLLDRLSDQLAGDFVRGFYTNKNMPCTIRTQCNA*
Ga0182165_112089313300015320Switchgrass PhyllosphereMGYAPGLALQVSGVSNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNS
Ga0182148_103165913300015325Switchgrass PhyllosphereNLNYGYAPGLALQVSGVNEVFWSVLNGVLLLLSCSWLLDRLNDQLMGDFARGVYTNKICHAIVRIRCNA*
Ga0182148_108542213300015325Switchgrass PhyllospherePGLALQVSGVNEDLWSGLNGVLLRLFCSWLLDRLSDQLVGDFVRGVYTNKNMPCNN*
Ga0182166_107972113300015326Switchgrass PhyllosphereMGYAPGLALHVSGVSNFFASGLACVFLLLSRLRLLDRLGDQLVGSFFRGVYTNKNMPCNN
Ga0182166_111276413300015326Switchgrass PhyllospherePGLALQVSGVNEVFWSVLNGVLLLLSCSWLLDRLNDQLVGDFVRGVYTNKICHATVRTQCDA*
Ga0182114_116217313300015327Switchgrass PhyllosphereNLNYGYAPGLPLQVSGVNEIFWSVLNGVLLLLSCSWLLDRLSDQLVGGFVRGVYTNTNMPCTVKTQHNA*
Ga0182153_104274813300015328Switchgrass PhyllosphereMGYAPGLALQVSGVNEVFWSVLNSILLLLFCLWLMDRLTDQLVGDFVRGVYTNKNMPCNR
Ga0182153_110663023300015328Switchgrass PhyllosphereLQVSGVNEVFWSVLNGVLLRLFYSWLLDRLSDQLADDFVHGVAGSI*
Ga0182135_108485613300015329Switchgrass PhyllosphereTLNNLNYGYAPGLALQVSGVNENLWSGLNGVLLRLFCSWLLDRLSDQLTGDLVRGVYTNKNMPCTIRTQCNA*
Ga0182152_105128513300015330Switchgrass PhyllosphereLNNLNYGYAPGLALQVSGVNKVFWSGLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATVRTQSNAYVLTMRKPKLNI*
Ga0182147_111272423300015333Switchgrass PhyllosphereLNNLNFGYAPGLALQVSGVNEIFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKN
Ga0182116_110953513300015335Switchgrass PhyllosphereGYAPGLALQVSGVNKVCWSVLNGVLLLLSCSWLLDRLNDQLVGDFARGVYTNKICHATVRTQSKA*
Ga0182149_106779813300015339Switchgrass PhyllosphereMGYALGLALQVSGISNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNS
Ga0182149_111600313300015339Switchgrass PhyllosphereNLNYGYAPGLVLQVSGVNEVFWSVLNGVLLRLFYSWLLDRLSDQLAGDFVRGVAGSI*
Ga0182149_111741013300015339Switchgrass PhyllosphereLQVSGVNKVCWSGLNGVLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATVRT
Ga0182133_115767813300015340Switchgrass PhyllosphereMGYAPGLALQVCRVGNFFRSGSDCVLLLLSRLRLLDRLGDQLVGDFVRGIYM*
Ga0182115_114904113300015348Switchgrass PhyllosphereLNKLNYGYAPGLALQVSGVNEVCWSGLNGVLLLLFGSWLLDRLSDQLAGDFVRGVYTNKNMPCTIRTQRNA*
Ga0182115_124375713300015348Switchgrass PhyllosphereGLALQVSGVNKVCWSVLNGDLLLLSCSWLLDRLSDQLVGDFVRGVYTNKNMPCTIRTQCNA*
Ga0182185_116966813300015349Switchgrass PhyllosphereNNLNYGYAPGLALKVCGVNEVFWGVLNGILLLLSCSWLLDRLSNQLVDSFVRGVYTNKNMPCNS*
Ga0182185_119147313300015349Switchgrass PhyllosphereMNNLNYGYAPGLALQVSGVNEIFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPCNN*
Ga0182163_122991113300015350Switchgrass PhyllosphereLALQVSGVNEVFWGVLNGILLLLLCSWLLDRLSDQLVGDFVRGVYTNKNMPCNS*
Ga0182163_126373813300015350Switchgrass PhyllosphereLNTENRGYAPGLALQVSGVNEVFWSGLNGVLLLLFCLWLLDRLSDKLVGDFVRGVYTYEKKRMPCNS*
Ga0182163_126394413300015350Switchgrass PhyllosphereGYAPGLALQVSGVNKVCWSVLNGDLLLLSCSWLLDRLSDQLVGDFVRGVYTNKNMPCTIRTQCNA*
Ga0182169_105110523300015352Switchgrass PhyllospherePGLALQVSGVNENLRSGLNGVLLLLSCSWLLDRLNDQLVGDFVRGVYTNKICHATVRIQCNA*
Ga0182169_113922713300015352Switchgrass PhyllosphereMHKYLNKHYYTEYMGYAPGLALQVNGVNEVFWSVLNGVLLLLSRLRLLDRFSYQLVDGFVRGV*
Ga0182179_100595743300015353Switchgrass PhyllosphereYAPGLALQVSGVNEVFWSGLNGVLLLLFCSWLLDRISDQLAGDFVRSFYTNKNMPCTIRTQCNA*
Ga0182179_121532613300015353Switchgrass PhyllosphereRGYAPGLALQVSGVNEVFWSGLNGVLLLLFCLWLLDRLSDQLVGDFVRGVYTNKNMPYNR
Ga0182213_115060113300017421Switchgrass PhyllosphereMGYAPGLALQVSGVNEVFWSVLNGILLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNS
Ga0182201_101339213300017422Switchgrass PhyllosphereLALQVSGVSDFFRCVLDCVLLLFSRLRLLDRLGNQLVGDFGRGVYTNKNMPCTIRTQCNA
Ga0182196_113367913300017432Switchgrass PhyllosphereMDYAPGLALQVSGVNEIFWSVLNGVLLRLFCSWLLDRLSNQLAGDFVRGVYTNKNMPCNS
Ga0182194_107096213300017435Switchgrass PhyllosphereLHVSGVNEVFWSVLNGVLLLLFCLWLLDRLDDQLVGGFVRGVYTNKNMPSNN
Ga0182200_107012713300017439Switchgrass PhyllosphereALQVSGVNEIFWSGLNGDLLLLFCLWLLDRLSNQLVGDFVRGVYTNKNMPRNR
Ga0182198_111891913300017445Switchgrass PhyllosphereNNLNFGYAPGLALQVSGVNEIFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPCNN
Ga0182215_108160613300017447Switchgrass PhyllosphereMGYAPGLALQVSGVNEIFWSVLNGVLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPCNS
Ga0182212_106331813300017691Switchgrass PhyllosphereYTEFMGYTPGLALQVSGVSNFFGSGFDCVLLLLSRLRLLDRLGDQLVGGFVRIVCTY
Ga0182178_101077113300020023Switchgrass PhyllosphereMGYAPGLALQVSGVSNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNN
Ga0182118_10925823300020223Switchgrass PhyllosphereMGYAPGLALQVSGVSNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMTCNS
Ga0207662_1040779313300025918Switchgrass RhizosphereLQVSGVNKVCWSVLNGVLLLLLCSWLLDRLNDQLVGDFARGVYTNKICHATVRTQSNA
Ga0268322_102935813300028049PhyllosphereLQVSGVNKVCWSVLNGVLLLLSCSWLLDRLNDQLVGDFARGFYTNKICHATVRIWCNA
Ga0268328_106788813300028050PhyllosphereMDYAPGLSLQVSGVNEVFWSVLNGVLLLLFCLWLLDRLSDQLVGDFVRDVYTNKNMTCNR
Ga0268346_101709513300028053PhyllosphereMHNLNYGYAPGLALQVSGVNKVCWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPSNS
Ga0268346_101861713300028053PhyllospherePGLALQVSGVNKVCWSVLNGVLLLLSCSWLLDRLNDQLVGDFARDVYTNKICHATVRTQSNAYVLTMRKPKFKHLA
Ga0268338_101923313300028055PhyllosphereMGYAPGIALQVSGVSNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVRGVYTNKNMPCNS
Ga0268338_102087513300028055PhyllosphereLNNLNFGYAPGLALQVSGVNEIFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKNMPCNN
Ga0268347_101107023300028142PhyllosphereAPGLALQVSGVNKVCWSVLNGDLLLLSCSWLLDRLSDQLVGDFVRGVYTNKNMPCTIRTQCNA
Ga0268308_102764813300028151PhyllosphereLQVSGVNEVFWSVFNGVLLLLFYLWLLDRLSDQLVGDFVRGVYTNKKICHATVRTQCDA
Ga0268336_101331913300028152PhyllosphereMHNLNYGYAPGLALQVSGVNKVCWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKD
Ga0268336_102051513300028152PhyllosphereMGYAPGLALQVSGVSNIFASGLDCVFLLLSRLRLLDRLGDQLVGGFVRGVYTNKT
Ga0268320_101560013300028153PhyllosphereMGYALGLALQVSGVSNFFGSGLDCVLLLLSRLRLLDRLGDQLVGDFVPGVYT
Ga0268351_100934013300028246PhyllosphereNLKYGYAPGLALQVSGVNENLWSGLNGVLLRLFCSWLLDRLSDQLVSDFVRGVYTNKNMPCNN
Ga0268310_100964413300028262PhyllosphereMGYAPGLALQVSGVNEVFWSVLNGILLLLFCLWLLDRLTGQLVGDFVRGVYTNKNMPCNR
Ga0268321_10173323300028466PhyllosphereTLNNLNYGYAPGLALQVSRVNKVCWSVLNGVLLLLSCSWLLDRLNDQLVGDFARGVYTNKICHATVRTQSNAYVLAMRKPKFKHLA
Ga0268309_101362723300028477PhyllosphereMHNLNYGYAPGLALQVSGVNKVFWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATVRIRCNA
Ga0268305_10603313300028525PhyllosphereLQVSGVNKVCWSVLNGDLLLLSCSWLLDRLSDQLVGDFVRGVYTNKNMPCIIR
Ga0268311_100136013300028529PhyllosphereLQVSGVNKVCWSGLNGVLLLLLCSWLLDRLNDQLVDSFVRGVYTNKICHATVRTQSNAYVLTMRKPKLKHLA
Ga0214503_106599013300032466Switchgrass PhyllosphereLNTENRGYAPGLALQVSGVNEIFWSGLNGDLLLLFCLWLLDRLSDQLVGGFVRGVYTYEKEMPCND
Ga0214488_106143313300032467Switchgrass PhyllosphereLNTEIKGYAPGLALQVSGVSDFFGSVLDCVLLPFSRLRLLDRLGNQLVGDFGRGVYTNKNMPCTIRTQCNA
Ga0214490_106258113300032502Switchgrass PhyllosphereGYAPGLALQVSGVSNFFASGLACVFLLLSRLRLLDRLGDQLVGSFVRGVYTNKNMPCNR
Ga0214490_114832913300032502Switchgrass PhyllosphereMGYAPRLALQVSGVNEVFWSVLNGVLLLLSRLRLLDRLGDQLVGDFVRSVYTNKNMTCNS
Ga0214497_109696813300032689Switchgrass PhyllosphereLNNLNYGYAPGLALQVSGDNKVCWSVLNGDLLLLLCSWLLDRLNDQLVDSFVRGVYTNKD
Ga0314754_102607413300032760Switchgrass PhyllosphereEIFWSGLNGDLLLPFCLWLLDRLSDQLVGGFVRGVYTYEKEMPCND
Ga0314745_103935123300032812Switchgrass PhyllosphereMGYAPGLALQVSGVSNFLASGLACVFLLLSRLRLLDRLGDQLVGSFVRGVYTNKNMPCNR
Ga0314723_104203113300032823Switchgrass PhyllosphereMGYAPGLVLQVSGVSNFLASGLACVFLLLSRLRLLDRLGDQLVGSFVRGVYTNKNMPCNR
Ga0314737_104542513300032875Switchgrass PhyllosphereEYMGYAPGLALQVSGVSNFFASGLACVFLLLSRLRLLDRLGDQLVGSFVRGVYTNKNMPCNR
Ga0314752_102810613300032976Switchgrass PhyllosphereLNTENRCYAPGLALQVSGVNEIFWSGLNGDLLLLFCLWLLDRLSDQLVGGFVRGVYTYEKEMPCND
Ga0314761_102682313300033526Switchgrass PhyllosphereMGYAPGLALQVSGVSNFFASGLACVFLLLSRLRLLDRLGDQLVGSFVRGVYTNKNMPCNS
Ga0314761_104492213300033526Switchgrass PhyllosphereENRGYAPGLALQVSGVNEIFWSGFNGDLLLLFCLWLLDRLSDQLVGGFVRGVYTYEKEMPCND
Ga0314760_103047013300033530Switchgrass PhyllosphereLNTENRGYAPGLALQVSGVNEIFWSGLNGDLLLLFCLWLLDRLNDQLVGGFVRGVHTYEKEMPCND
Ga0314767_108122513300033532Switchgrass PhyllosphereGSGVNEVFWSGLNGDLLLLFCLWLLDRLSDQLVGGFVRGVYTYEKEMPCND
Ga0314759_125157113300033535Switchgrass PhyllosphereAQYLSKHEIILNYGYAPGLALQVRGVNKVCWSVLNGVLLLRLCSWLLDRLNDQLVDSFVRGVYTNKI

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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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