Metagenome Family F098547

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098547
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	64 residues
Representative Sequence	MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE
Number of Associated Samples	44
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.47 %
% of genes near scaffold ends (potentially truncated)	11.65 %
% of genes from short scaffolds (< 2000 bps)	64.08 %
Associated GOLD sequencing projects	39
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (43.689 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater (26.214 % of family members)
Environment Ontology (ENVO)	Unclassified (32.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (28.155 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.44% β-sheet: 0.00% Coil/Unstructured: 36.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00005	ABC_tran	51.46
PF12679	ABC2_membrane_2	4.85
PF03988	DUF347	3.88
PF12728	HTH_17	1.94
PF13732	DUF4162	1.94
PF01555	N6_N4_Mtase	0.97
PF05970	PIF1	0.97
PF01329	Pterin_4a	0.97
PF04055	Radical_SAM	0.97
PF13412	HTH_24	0.97
PF01522	Polysacc_deac_1	0.97
PF02780	Transketolase_C	0.97
PF00144	Beta-lactamase	0.97
PF03023	MurJ	0.97
PF13304	AAA_21	0.97
PF04079	SMC_ScpB	0.97
PF01022	HTH_5	0.97
PF02518	HATPase_c	0.97
PF12704	MacB_PCD	0.97
PF00932	LTD	0.97
PF03413	PepSY	0.97
PF07508	Recombinase	0.97
PF05157	T2SSE_N	0.97
PF10431	ClpB_D2-small	0.97
PF13185	GAF_2	0.97
PF13328	HD_4	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG4705	Uncharacterized membrane-anchored protein	Function unknown [S]	3.88
COG0507	ATPase/5Ã¢â‚¬â„¢-3Ã¢â‚¬â„¢ helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	Replication, recombination and repair [L]	0.97
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	0.97
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.97
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	0.97
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.97
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.97
COG1386	Chromosome segregation and condensation protein ScpB	Transcription [K]	0.97
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.97
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.97
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.97
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	0.97
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.14 %
Unclassified	root	N/A	37.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.14 %
Unclassified	root	N/A	37.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.69 %
Unclassified	root	N/A	37.86 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	18.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.74 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	2.91 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
Dictyoglomi	phylum	All Organisms → cellular organisms → Bacteria → Dictyoglomi	1.94 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.97 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2.91 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.94 %
Dictyoglomia	class	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	1.94 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Thaumarchaeota incertae sedis	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis	2.91 %
Dictyoglomales	order	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Candidatus Fraserbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria	0.97 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.97 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.97 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Candidatus Nitrosotalea	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea	2.91 %
Dictyoglomaceae	family	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Natrialbales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales	0.97 %
Methanotrichales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dictyoglomus	genus	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Methylovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum	0.97 %
Methanotrichaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanothrix	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	0.97 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
unclassified Methanothrix	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix	0.97 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.86 %
Candidatus Nitrosotalea okcheonensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	2.91 %
Dictyoglomus thermophilum	species	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.94 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.94 %
Methanosaeta sp. ASM2	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. ASM2	0.97 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.97 %
Natrialbaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	0.97 %
Candidatus Fraserbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	0.97 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.97 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000571\|JGI1358J11329_10000473	All Organisms → cellular organisms → Bacteria	35932	Open in IMG/M
3300000571\|JGI1358J11329_10000576	All Organisms → cellular organisms → Bacteria	32642	Open in IMG/M
3300000571\|JGI1358J11329_10001212	All Organisms → cellular organisms → Bacteria	21603	Open in IMG/M
3300000571\|JGI1358J11329_10003164	All Organisms → cellular organisms → Bacteria	12364	Open in IMG/M
3300000571\|JGI1358J11329_10007176	All Organisms → cellular organisms → Bacteria	7342	Open in IMG/M
3300000571\|JGI1358J11329_10046250	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300000571\|JGI1358J11329_10103477	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	914	Open in IMG/M
3300000571\|JGI1358J11329_10110248	Not Available	869	Open in IMG/M
3300000571\|JGI1358J11329_10236320	Not Available	504	Open in IMG/M
3300003852\|Ga0031655_10005266	All Organisms → cellular organisms → Bacteria	7030	Open in IMG/M
3300003852\|Ga0031655_10146338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	921	Open in IMG/M
3300003861\|Ga0031654_10006915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3362	Open in IMG/M
3300004152\|Ga0062386_100596027	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300004775\|Ga0007798_10068463	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanosaeta sp. ASM2	792	Open in IMG/M
3300006057\|Ga0075026_100161650	Not Available	1155	Open in IMG/M
3300009091\|Ga0102851_11086966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	875	Open in IMG/M
3300009514\|Ga0129284_10238471	Not Available	813	Open in IMG/M
3300009538\|Ga0129287_10000357	All Organisms → cellular organisms → Bacteria	32922	Open in IMG/M
3300009538\|Ga0129287_10003725	All Organisms → cellular organisms → Archaea	8512	Open in IMG/M
3300009538\|Ga0129287_10058459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	1629	Open in IMG/M
3300009538\|Ga0129287_10170742	Not Available	936	Open in IMG/M
3300009538\|Ga0129287_10181588	Not Available	907	Open in IMG/M
3300009538\|Ga0129287_10216928	Not Available	829	Open in IMG/M
3300009538\|Ga0129287_10236156	Not Available	795	Open in IMG/M
3300009538\|Ga0129287_10591575	Not Available	501	Open in IMG/M
3300009566\|Ga0130025_1014930	All Organisms → cellular organisms → Archaea	8651	Open in IMG/M
3300009777\|Ga0105164_10145483	Not Available	1216	Open in IMG/M
3300009777\|Ga0105164_10354346	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	730	Open in IMG/M
3300010391\|Ga0136847_12996715	Not Available	766	Open in IMG/M
3300013086\|Ga0163202_1098709	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300013088\|Ga0163200_1048160	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300013088\|Ga0163200_1203489	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300013092\|Ga0163199_1078626	Not Available	1424	Open in IMG/M
3300013092\|Ga0163199_1271248	Not Available	647	Open in IMG/M
3300013092\|Ga0163199_1277928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	637	Open in IMG/M
3300015370\|Ga0180009_10002025	All Organisms → cellular organisms → Bacteria	23958	Open in IMG/M
3300017966\|Ga0187776_11139059	All Organisms → cellular organisms → Archaea	581	Open in IMG/M
3300021168\|Ga0210406_10681087	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300021178\|Ga0210408_10000119	All Organisms → cellular organisms → Bacteria	123055	Open in IMG/M
3300021178\|Ga0210408_10186528	All Organisms → cellular organisms → Archaea	1648	Open in IMG/M
3300021178\|Ga0210408_10599079	Not Available	873	Open in IMG/M
3300022553\|Ga0212124_10028045	All Organisms → cellular organisms → Bacteria	3516	Open in IMG/M
3300022553\|Ga0212124_10155736	Not Available	1256	Open in IMG/M
3300022553\|Ga0212124_10332210	Not Available	804	Open in IMG/M
3300022553\|Ga0212124_10479214	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300022553\|Ga0212124_10512998	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300022553\|Ga0212124_10709907	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300025173\|Ga0209824_10228653	Not Available	651	Open in IMG/M
3300027835\|Ga0209515_10000111	All Organisms → cellular organisms → Bacteria	150013	Open in IMG/M
3300027835\|Ga0209515_10003815	All Organisms → cellular organisms → Bacteria	20974	Open in IMG/M
3300027835\|Ga0209515_10003904	All Organisms → cellular organisms → Bacteria	20664	Open in IMG/M
3300027835\|Ga0209515_10005949	All Organisms → cellular organisms → Bacteria	15514	Open in IMG/M
3300027835\|Ga0209515_10007104	All Organisms → cellular organisms → Bacteria	13618	Open in IMG/M
3300027835\|Ga0209515_10008108	Not Available	12392	Open in IMG/M
3300027835\|Ga0209515_10013208	Not Available	8733	Open in IMG/M
3300027835\|Ga0209515_10016811	All Organisms → cellular organisms → Bacteria	7301	Open in IMG/M
3300027835\|Ga0209515_10032989	Not Available	4407	Open in IMG/M
3300027835\|Ga0209515_10038000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3969	Open in IMG/M
3300027835\|Ga0209515_10053262	All Organisms → cellular organisms → Archaea	3084	Open in IMG/M
3300027835\|Ga0209515_10054344	All Organisms → cellular organisms → Archaea	3038	Open in IMG/M
3300027835\|Ga0209515_10072694	All Organisms → cellular organisms → Archaea	2454	Open in IMG/M
3300027835\|Ga0209515_10076454	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Fraserbacteria → Candidatus Fraserbacteria bacterium	2366	Open in IMG/M
3300027835\|Ga0209515_10204527	All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus → Dictyoglomus thermophilum	1175	Open in IMG/M
3300027835\|Ga0209515_10333583	Not Available	836	Open in IMG/M
3300027835\|Ga0209515_10357137	Not Available	796	Open in IMG/M
3300027835\|Ga0209515_10498928	Not Available	630	Open in IMG/M
3300027896\|Ga0209777_10001878	All Organisms → cellular organisms → Bacteria	28929	Open in IMG/M
3300027896\|Ga0209777_10015610	All Organisms → cellular organisms → Archaea	7719	Open in IMG/M
3300027896\|Ga0209777_10333244	Not Available	1161	Open in IMG/M
3300027896\|Ga0209777_10405442	Not Available	1025	Open in IMG/M
3300027896\|Ga0209777_10655021	Not Available	753	Open in IMG/M
3300027896\|Ga0209777_10695673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	724	Open in IMG/M
3300027896\|Ga0209777_10889052	Not Available	618	Open in IMG/M
3300027900\|Ga0209253_10334358	All Organisms → cellular organisms → Archaea	1167	Open in IMG/M
3300027902\|Ga0209048_10020274	All Organisms → cellular organisms → Bacteria	5773	Open in IMG/M
3300027902\|Ga0209048_10068615	Not Available	2817	Open in IMG/M
3300027902\|Ga0209048_10181982	Not Available	1542	Open in IMG/M
3300028191\|Ga0265595_1133522	All Organisms → cellular organisms → Archaea	778	Open in IMG/M
3300031257\|Ga0315555_1010380	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	5845	Open in IMG/M
3300031257\|Ga0315555_1328426	All Organisms → cellular organisms → Archaea	559	Open in IMG/M
3300031277\|Ga0307425_1159114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	698	Open in IMG/M
3300031552\|Ga0315542_1050701	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	1702	Open in IMG/M
3300031552\|Ga0315542_1211504	Not Available	682	Open in IMG/M
3300031698\|Ga0315537_1165593	Not Available	988	Open in IMG/M
3300031707\|Ga0315291_10027326	All Organisms → cellular organisms → Archaea	6695	Open in IMG/M
3300031707\|Ga0315291_10088513	Not Available	3371	Open in IMG/M
3300031707\|Ga0315291_10407343	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosotalea → Candidatus Nitrosotalea okcheonensis	1291	Open in IMG/M
3300031873\|Ga0315297_10678343	Not Available	863	Open in IMG/M
3300031885\|Ga0315285_10303264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1196	Open in IMG/M
3300031952\|Ga0315294_10037523	All Organisms → cellular organisms → Bacteria	5212	Open in IMG/M
3300031997\|Ga0315278_10000175	All Organisms → cellular organisms → Bacteria	57364	Open in IMG/M
3300031997\|Ga0315278_11484277	Not Available	653	Open in IMG/M
3300031999\|Ga0315274_10424581	Not Available	1532	Open in IMG/M
3300031999\|Ga0315274_10838182	Not Available	968	Open in IMG/M
3300032053\|Ga0315284_10928475	Not Available	990	Open in IMG/M
3300032069\|Ga0315282_10003800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	26855	Open in IMG/M
3300032069\|Ga0315282_10633719	Not Available	570	Open in IMG/M
3300032070\|Ga0315279_10464855	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300032118\|Ga0315277_11720198	All Organisms → cellular organisms → Archaea	525	Open in IMG/M
3300032143\|Ga0315292_11147278	All Organisms → cellular organisms → Archaea	641	Open in IMG/M
3300032156\|Ga0315295_10450835	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae	1308	Open in IMG/M
3300032163\|Ga0315281_12062725	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300032173\|Ga0315268_10250469	Not Available	1705	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	94.17%
Terrestrial	Environmental → Terrestrial	5.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	77.67%
Unclassified	Environmental → Aquatic → Unclassified	8.74%
Marine	Environmental → Aquatic → Marine	5.83%
Soil	Environmental → Terrestrial → Soil	4.85%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.97%
Sediment	Environmental → Aquatic → Sediment	0.97%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.97%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	31.07%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	27.18%
Lentic	Environmental → Aquatic → Freshwater → Lentic	14.56%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	8.74%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	3.88%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.94%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Aquifer	Environmental → Terrestrial → Deep Subsurface → Aquifer	0.97%

Habitat	Taxonomy	Distribution
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	26.21%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	19.42%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	13.59%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	11.65%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	8.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	2.91%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	26.21%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.45%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	13.59%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	11.65%
Beach Aquifer Porewater	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater	8.74%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	2.91%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.97%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.97%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Aquifer Solids	Environmental → Terrestrial → Deep Subsurface → Aquifer → Unclassified → Aquifer Solids	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000571	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300003861	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009514	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - F-1W	Environmental	Open in IMG/M
3300009538	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2W	Environmental	Open in IMG/M
3300009566	Methanogenic o-xylene degrading microbial communities from aquifer solids in Pensacola, Florida - enrichment culture X8-AB	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300013086	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_300m	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300013092	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m	Environmental	Open in IMG/M
3300015370	Groundwater microbial communities from the Aspo Hard Rock Laboratory (HRL) deep subsurface site, Sweden - OS_PC_MetaG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028191	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2013_06_06_50m	Environmental	Open in IMG/M
3300031257	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-80	Environmental	Open in IMG/M
3300031277	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-30	Environmental	Open in IMG/M
3300031552	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-20	Environmental	Open in IMG/M
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1358J11329_1000047339	3300000571	Groundwater	MRQIFLFISLAVLGFGLYLKFFYDVPDSQMQINFFASWFLIIVGIASLLMNLFWNNSKKRRE*
JGI1358J11329_1000057634	3300000571	Groundwater	MKQIFLFISIAVIGAGLYLKFFYDVPDSQIATNFFVSGFLIIVGISSLLINLFWTTPKNKNR*
JGI1358J11329_1000121221	3300000571	Groundwater	MRQIFLFVSLAVLGFGAYLKFFYDVPDAQIQINFFVGWFLIIVGVASLLMNLFWSNPKKRKEE*
JGI1358J11329_100031646	3300000571	Groundwater	MKQIFLFVSLAVLGFGLYLKFFYDTPDSQIQINFFVSWFLIIVAIASLLMNLFWSNPKKRKEE*
JGI1358J11329_100071769	3300000571	Groundwater	MKQIFLSVSLAVIGFGLYLKFFYDAPDEQITVNFFVSWFLIIVGTSSLLMNLFWSSKKKQRSISE*
JGI1358J11329_100462503	3300000571	Groundwater	MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE*
JGI1358J11329_101034772	3300000571	Groundwater	MKQIFLFISFIVIGLGLYLKYFYDVPDEQITINFFVSGFFIIVGIASLLINIFWTTQVKNNKEL*
JGI1358J11329_101102482	3300000571	Groundwater	MRQIFLFVSLAVLGFGFYLKFFYDVPDSQIQINFFVSWFLIIVGGASILMNLFWSGPRKKKNNDA*
JGI1358J11329_102363202	3300000571	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDSQVSINFFVSWFFVIVGVSSLLTNLFWTTKPKPKNPDHL*
Ga0031655_100052667	3300003852	Freshwater Lake Sediment	MRQFLFVVSLALLGSGVYLKLFYDVPDSAEVINFFVSWFLVIVGVASLLINLLWSSPRKTR*
Ga0031655_101463382	3300003852	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIITGISSLLINLLWDSKKKEKNLE*
Ga0031654_100069153	3300003861	Freshwater Lake Sediment	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIMGISSLLINLFWSTPKHKHNKE*
Ga0062386_1005960271	3300004152	Bog Forest Soil	MRQIFLFVSLAVIGFGLYLKFFYDTPDHQVTINCFVSWFLIIAGSSSLLMNPFWTSKRRQKSVNE*
Ga0007798_100684632	3300004775	Freshwater	MRQIFLFISLAVLGFGLYLRLFYDAPDSQEKINFFVSWFLMIIALSSLLINLFWDTKKKRTDGE*
Ga0075026_1001616502	3300006057	Watersheds	MKQIFLFVSIFLVGVGFYLMYFYDVPDEQATINFFVSWFLMIVGISSLLINVVWKDTAKSSKHKNV*
Ga0102851_110869662	3300009091	Freshwater Wetlands	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIMGLSSLLINLFWDRPKKAHNKE*
Ga0129284_102384712	3300009514	Beach Aquifer Porewater	MKQIFFFISLAVLGFGLYLKFFYDVPDSQASINFFVSGFLIIVGLSSMLINLFWGKSKKHSRGNHE*
Ga0129287_1000035730	3300009538	Beach Aquifer Porewater	MGEQMRQVFLFVSLAIIGIGLYLKFFYDVPDNQATINFFTSWFFIIVGTSNLLINLFWSSPKNKKFNKQSE*
Ga0129287_1000372510	3300009538	Beach Aquifer Porewater	MRQIFFFISLVVLGFGLYLKFFYDVPDSQAAINFFVSGFLIIIGLSSMLINLFWGKPKHSRGNHE*
Ga0129287_100584593	3300009538	Beach Aquifer Porewater	MGEQMRQVSLFVSLAIIGIGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKNSNKQSK*
Ga0129287_101707422	3300009538	Beach Aquifer Porewater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIIGVSSLLVNFFWDSPKNKNSHKEQK*
Ga0129287_101815881	3300009538	Beach Aquifer Porewater	LAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLFWGSPKKKNSNKKSE*
Ga0129287_102169282	3300009538	Beach Aquifer Porewater	MKQIFLFITIAIIGLGLYLKYFYDVPDSQAAINFFVSWFFIIVGAAGLLVNISWTAKPRRKDDSNI*
Ga0129287_102361562	3300009538	Beach Aquifer Porewater	VFLFVSLVFIGLGLYLKFFYDVPDSQETINFFTSWFFIIVGISSLLINLFWSSPKKNSNQKSK*
Ga0129287_105915751	3300009538	Beach Aquifer Porewater	MGEQMRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLFWDSPKNSNKQSE*
Ga0130025_10149309	3300009566	Aquifer Solids	MRQILLFISLAVLCFGLYLKLFYDVPDSQEKINFFVSGFFIIIGISSLLMNLLWDTKKRKNRE*
Ga0105164_101454833	3300009777	Wastewater	MRQVFLFVSLAIIGIGLYLNFFYDVPDSQATINFFTSWFFIIMGTSGLLINLFWGSPKNKDSHKE
Ga0105164_103543462	3300009777	Wastewater	MKQVFFFISLAVLGFGLYLKLFYDVPDAQTDINFFVSWFLIIVGVASMLINLFWTAEKKQRKTE*
Ga0136847_129967152	3300010391	Freshwater Sediment	MRQIFLFISFAVVGAGLYLKFFNDVPDNQEAINSFVSWFLVIIGISSFFINIFWSSPRKTPHNKKQ*
Ga0163202_10987092	3300013086	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNKSSHNEQK*
Ga0163200_10481603	3300013088	Freshwater	MGEQMRQVFLFVSLAIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKDSHKEQK*
Ga0163200_12034892	3300013088	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLLWDSPKNKNSNKQSE*
Ga0163199_10786262	3300013092	Freshwater	MRQIFLFVSLAVIGFGLYLKFFYDTPDEQIIINFFVSGFLIIVGISSLLVNLFWSPRKKQRSSNE*
Ga0163199_12712482	3300013092	Freshwater	MKQIFLFLSLFLIGVGFYLKFFYDVPDVQETINFFVSWFLMIVGASSLLINLFWKDSSKPTNNRNI*
Ga0163199_12779282	3300013092	Freshwater	MGEQMRQVFLFVSLAIIGIGVYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNSHKDQK*
Ga0180009_1000202525	3300015370	Groundwater	MRQVFLFVSLAITGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSGLLINLFWNSPKNKNSNKQSE*
Ga0187776_111390592	3300017966	Tropical Peatland	MKQIFIFISLLVLGFGLYLKFFYDVPDSQETINFFVSGFLIIMGISSLLINLFWSTQKKERNKE
Ga0210406_106810872	3300021168	Soil	MRQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGASSLLMNVAWSTSKKRRDKEE
Ga0210408_100001196	3300021178	Soil	MRQIFLFVSLAVVGFGLYLKFFYDTPDDQITINFFVSWFLIIVGSSSLLMNLFWSSKKKQRNLDE
Ga0210408_101865282	3300021178	Soil	MRQVFLFVSLAVIGFGLYLKFFYDTPDDQITINFFVSWFLIIVGSSSLLMNLFWSSKKKQRNIDE
Ga0210408_105990792	3300021178	Soil	MKQIFLFVSLVVIGAGLYLMYFYDVPDSQLSINFFVSWFLVIVGCSSLLINLFWSTKPKDRNRQSE
Ga0212124_100280453	3300022553	Freshwater	MRQVFLFVSLAIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINLFWGSPKNKDSHKEQK
Ga0212124_101557363	3300022553	Freshwater	MRQVFLFVSLAIIGIGVYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNSHKDQK
Ga0212124_103322102	3300022553	Freshwater	MRQVFLFVSLTIIGVGLYLKFFYDVPDAQETINFFTSWFFIIVGTSSLLINL
Ga0212124_104792142	3300022553	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSSLLINLLWDSPKNKNSNKQSE
Ga0212124_105129982	3300022553	Freshwater	MRQVFLFVSLAIIGIGLYLKFFYDVPDVQETINFFTSWFFIIVGTSSLLINLFWGSPKNKSSHNEQK
Ga0212124_107099071	3300022553	Freshwater	QMRRVFLFVSLIIIGIGLYLKFFYDVPDSQETINFFTSWFFIIVGTSCLLINLFWGSPKNKNYNKQSE
Ga0209824_102286532	3300025173	Wastewater	MRQVFLFVSLAIIGIGLYLNFFYDVPDSQATINFFTSWFFIIVGTSSLLINLFWGSSKNKNSNKE
Ga0209515_1000011174	3300027835	Groundwater	MKQIFLFISIAVIGAGLYLKFFYDVPDSQIATNFFVSGFLIIVGISSLLINLFWTTPKNKNR
Ga0209515_1000381516	3300027835	Groundwater	MKQIFLFVSLAVLGFGLYLKFFYDTPDSQIQINFFVSWFLIIVAIASLLMNLFWSNPKKRKEE
Ga0209515_100039047	3300027835	Groundwater	MRQIFLFVSLAVLGFGFYLKFFYDVPDSQIQINFFVSWFLIIVGGASILMNLFWSGPRKKKNNDA
Ga0209515_1000594919	3300027835	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDAQAAINFFVSWFFIIVGISSLLINIFWTSTPAHKKLI
Ga0209515_1000710410	3300027835	Groundwater	MRQIFLFVSLAVLGFGAYLKFFYDVPDAQIQINFFVGWFLIIVGVASLLMNLFWSNPKKRKEE
Ga0209515_1000810812	3300027835	Groundwater	MKQIFLFISFIVIGLGLYLKYFYDVPDEQITINFFVSGFFIIVGIASLLINIFWTTQVKNNKEL
Ga0209515_100132089	3300027835	Groundwater	MKQIFLSVSLAVIGFGLYLKFFYDAPDEQITVNFFVSWFLIIVGTSSLLMNLFWSSKKKQRSISE
Ga0209515_100168115	3300027835	Groundwater	MKQIFLFVSLAIIGFGLYLKFFYDTPDEQIVINFFVGWFLIIVGISSLLMNLFWSSKKKQKSSDQ
Ga0209515_100329892	3300027835	Groundwater	MKQIFLFVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLIIVGTSSLLMNLFWASKKKQKSIEE
Ga0209515_100380005	3300027835	Groundwater	MKHTFIFISLGIIGIGFYFMFFYDVPDVQANINFFTSWFLVIVGVASLLVNLFWKSKRKE
Ga0209515_100532622	3300027835	Groundwater	MRQIFLFVSLAVIGFGIYLKFFYDTPDDQVTINFFVSWFLIIVGTSSLLMNLFWSSKKKQRSLDE
Ga0209515_100543444	3300027835	Groundwater	MKHIFIFISLGIIGIGFYFMFFYDVPDVQVNINFFSSWFLVIVGVASLLVNLFWQSKKKE
Ga0209515_100726943	3300027835	Groundwater	MRQIFLFVSLAIVGFGLYLKFFYDVPDAQITINFFVGWFLIIVGVSSLLMNIVWSTSRKNKDE
Ga0209515_100764542	3300027835	Groundwater	MKQIFLFISLAVIGVGLYLMYFYDVPDSQVSINFFVSWFFVIVGVSSLLTNLFWTTKPKPKNPDHL
Ga0209515_102045272	3300027835	Groundwater	MKQIFLFISLAVLGFGLYLNIFYDVPDAQITINFFVSWFLIIVGVASILVNLFWTAEKKQRKTE
Ga0209515_103335832	3300027835	Groundwater	MRQIFIFVSLAVLGFGLYLKFFYDTPDEQMAINFFVSGFLVIIGTSSLLINLFWSTKKRERNMEE
Ga0209515_103571372	3300027835	Groundwater	MRQIFLFVSLAIIGFGLYLKFFYDTPDAQMTINFFVGWFLVIVGTSSLLINLFWSTKRKRSTIDE
Ga0209515_104989282	3300027835	Groundwater	FVSLAVIGFGLYLKFFYDTPDEQITINFFVSWFLLIVGASSLLMNLFWSKKKKQRNLEQ
Ga0209777_1000187812	3300027896	Freshwater Lake Sediment	MRQFLFVVSLALLGSGVYLKLFYDVPDSAEVINFFVSWFLVIVGVASLLINLLWSSPRKT
Ga0209777_100156107	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIITGISSLLINLLWDSKKKEKNLE
Ga0209777_103332441	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIIIGISSLLTNLLWDTKKKEKNLE
Ga0209777_104054422	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFMIIGISSLLINLLWDTKKKEKNPE
Ga0209777_106550211	3300027896	Freshwater Lake Sediment	MKQVFLFISFAVIGAGIYLKYFYDVPDSQTEINYFVSWFFIIVGISSLLINIFWQTKKPPRNIE
Ga0209777_106956732	3300027896	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFITIGISSLLINLLWDTKKKEKNLE
Ga0209777_108890522	3300027896	Freshwater Lake Sediment	MRQIFLFISLAVLCFGLYLRLFYDVPDSQEKINFFVSWFLIIIALSSLLINLFWDTKKKRTDGE
Ga0209253_103343582	3300027900	Freshwater Lake Sediment	MKQIFIFVSLIVLGCGLYLGFFYDVPDDQETTNFFVSGFLIIIGISSLLINLFWSTPKNKHNKE
Ga0209048_100202748	3300027902	Freshwater Lake Sediment	MRQIFLFVSLAVIGFGIYLKYLYDVPDSQETINFFVSGFLIIVGVGTLLMNLVWKSTKA
Ga0209048_100686153	3300027902	Freshwater Lake Sediment	MRQIFLFVSLGMLCFGLYLGFFYDVPDSQEKINFFVSWFFIIIGISSLLMNLLWDTEKKEKNRE
Ga0209048_101819823	3300027902	Freshwater Lake Sediment	MRQVFLFVSLAILCFGLYLRLFYDVPDSQEKINFFVSWFFIIIGISSLLINLLWDTKKKEKILE
Ga0265595_11335222	3300028191	Saline Water	MKNIFLFISIIIIGIGAYLKFVYDVPDNQESINFFVSWFLIIVGISSILINLFWKTPNQKNKVKD
Ga0315555_10103803	3300031257	Salt Marsh Sediment	MRQILLFVSMAVIGGGLYLKLFYDVPDSQTQINFFVSWFFIIIGVGSLLVNIFWGNTGDKENRNKD
Ga0315555_13284262	3300031257	Salt Marsh Sediment	MRQIFLFISMVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0307425_11591142	3300031277	Salt Marsh	MRQIFLFISLVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0315542_10507013	3300031552	Salt Marsh Sediment	LRVGESMRQIFLFISLVVIGIGLFLKFFYDVPDAQETINFFTSWFFIIIGLSSLLINLVWDSPKK
Ga0315542_12115042	3300031552	Salt Marsh Sediment	MKQILLFISMAIIGIGLYFTLFYDVPDSQTQINFFVSWFFIIIGIGSLLVNIFWGNPGDKKTDNKN
Ga0315537_11655932	3300031698	Salt Marsh Sediment	MRQILLFVSMAVIGGGLYLKLFYDVPDSQTQINFFVSWFFIIIGVGSLLVNIFWGNTGDKEN
Ga0315291_100273264	3300031707	Sediment	MIQIFIFISLAMLVFGLYLALFYDVPDSQEKINFFVSWCLIIVGISSFLINLFWDTKKRRKNGE
Ga0315291_100885135	3300031707	Sediment	MRQIFLFVSLAMLCFGLYLGLFYDVPDSQEKINFFVSWFLIIIGISSLLINLLWDAKKKRKD
Ga0315291_104073431	3300031707	Sediment	MRQIFLFISLVIIGAGLYLKFIYDVPDSEEVINFFVSGFLIIVGISSLLVNLFWSTKPVRKNHD
Ga0315297_106783432	3300031873	Sediment	MKTIFLIISLGVIGLGLYLKVFSDVQDSQETINTFVSWFLIICGISSALINLLWTRKRTR
Ga0315285_103032642	3300031885	Sediment	MKQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGIGSLLVNLFWKSSPFQKKSRE
Ga0315294_100375235	3300031952	Sediment	MRQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGIGSLLVNLFWKSSPFQKKSRE
Ga0315278_1000017540	3300031997	Sediment	MRQIAIFISLAVLGVGLYLKYFNDVPDSQETINFFVSGFLIIVGVGTLLMNLVWKSTKAKPPEQK
Ga0315278_114842772	3300031997	Sediment	MKQIFLFISIAIICAGLYLRLFYDVPDAQEQTNFFVSWFFIIIGSGSLLINVFWNHKKKISNQE
Ga0315274_104245812	3300031999	Sediment	MKQIFIFISLAMLVFGLYLALFYDVPDSQEKINFFVSWCLIIVGISSFLINLFWDSKKRGKNWE
Ga0315274_108381822	3300031999	Sediment	MRQILFFISLAVLAFGLYLKFFHDVPDTQEAINFFVSWFLIIVSTSSMLVNMFWSKTKNSKDDDE
Ga0315284_109284751	3300032053	Sediment	IGAGLYLKFIYDVPDSEEVINFFVSGFLIIVGISSLLVNLFWSTKPVRKNHD
Ga0315282_1000380010	3300032069	Sediment	MRQVLFFISVALLGIGIYLKFFYDVPDADQAINFFTSWFFIIIGVASLLINLFWSSPKKT
Ga0315282_106337191	3300032069	Sediment	MRQIFLFVSLTVLGFGLYLRFFYDVPDSQTQINFFVSWFLIIVGISSLLMNLFWTRVKK
Ga0315279_104648552	3300032070	Sediment	MRQILLIISLAIIGVGLYLKFVYDVPDSEETINFFVSGFLIIVGISSLLVNLFWSTKPVKKNHDRE
Ga0315277_117201982	3300032118	Sediment	MRQIFLFISIAIICFGLYLKFIYDVPDSEERINFFVSGFLIVVGTSSLLVNLFWSTKPVRKNHD
Ga0315292_111472782	3300032143	Sediment	MRQIFLFISLVIIGAGLYLKFIYDVPDSEEMINFFVSGFLIIVGISSLLVNLFWSAKPVRKNHDQE
Ga0315295_104508352	3300032156	Sediment	MRQIFLFVSLAVVGFGVYLKYLYDVPDSQETINFFVSGFLIIVGVGSLLVNLFWKSSPSQRKSQE
Ga0315281_120627251	3300032163	Sediment	MKQTFLFIAIAIIGVGLYLKYFYDVPDSQAAINFFVSWFFVIIGVAGLLVNIFWTTKSKHKEGGDI
Ga0315268_102504692	3300032173	Sediment	MRQVFLFVSLAIIGVGLYLKFFYDVPDVKESINFFTSWFFIITGTSSLLINLFWGSSKNKDSHKEQK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098547

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences