Metagenome Family F098817

Basic Information
Family ID	F098817
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	56 residues
Representative Sequence	AKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	4.85 %
% of genes from short scaffolds (< 2000 bps)	5.83 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Most Common Taxonomy
Group	Unclassified (94.175 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (9.709 % of family members)
Environment Ontology (ENVO)	Unclassified (34.951 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.485 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.50% β-sheet: 31.25% Coil/Unstructured: 56.25%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00005	ABC_tran	85.44
PF02445	NadA	0.97
PF00487	FA_desaturase	0.97
PF05635	23S_rRNA_IVP	0.97
PF01078	Mg_chelatase	0.97
PF00111	Fer2	0.97
PF12698	ABC2_membrane_3	0.97
PF00437	T2SSE	0.97
PF00561	Abhydrolase_1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0379	Quinolinate synthase	Coenzyme transport and metabolism [H]	0.97
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.97
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.97

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
All Organisms	root	All Organisms	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
cellular organisms	root	All Organisms → cellular organisms	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.17 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.83 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005347\|Ga0070668_101091214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	720	Open in IMG/M
3300005436\|Ga0070713_101637476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300018052\|Ga0184638_1120589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	958	Open in IMG/M
3300021073\|Ga0210378_10396830	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300025972\|Ga0207668_11720587	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300031720\|Ga0307469_11185844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.02%
Host-Associated	Host-Associated	33.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.22%
Plants	Host-Associated → Plants	33.98%
Aquatic	Environmental → Aquatic	6.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.53%
Marine	Environmental → Aquatic → Marine	2.91%
Sediment	Environmental → Aquatic → Sediment	2.91%
Peat	Environmental → Terrestrial → Peat	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.77%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Sand	Environmental → Terrestrial → Soil → Sand	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.30%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.94%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013832	Permafrost microbial communities from Nunavut, Canada - A3_5cm_0M	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018032	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MG	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027395	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 PM (SPAdes)	Host-Associated	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26145J50221_10064162	3300003371	Arabidopsis Thaliana Rhizosphere	DARVRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN*
Ga0055465_101272982	3300004013	Natural And Restored Wetlands	PQARPNAPFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVSAGRETPRV*
Ga0066685_107184641	3300005180	Soil	ARARARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAH*
Ga0068995_101074742	3300005206	Natural And Restored Wetlands	VSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNAGIVSGQTFVVEAAGGPPKA*
Ga0070670_1013689242	3300005331	Switchgrass Rhizosphere	RFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLQPVNANVVSGQTFVVSAGSETPRA*
Ga0070661_1001064403	3300005344	Corn Rhizosphere	VSIKPRAEYASRKNWGLQSRDLLTFSVRLQPINAPVVSGQTFVVEVGGQG*
Ga0070668_1009744361	3300005347	Switchgrass Rhizosphere	KIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG*
Ga0070668_1010912142	3300005347	Switchgrass Rhizosphere	AFTLGKTVEIWPQARPDARARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0070668_1020345962	3300005347	Switchgrass Rhizosphere	GKTVEIWPQARPGTHSRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLAVVSGQTFVVEAGAN*
Ga0070667_1013919701	3300005367	Switchgrass Rhizosphere	ARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0070713_1016374762	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KTVRVWPQARASGQSFPARVLSIKPRSEFATRRNWGMQSRDLKTFSVRLKPEGAPVVSGQTFVVEAGS*
Ga0070701_101634542	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	PRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA*
Ga0070663_1003969102	3300005455	Corn Rhizosphere	RSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0068867_1016503911	3300005459	Miscanthus Rhizosphere	VVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0068853_1018112822	3300005539	Corn Rhizosphere	AKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0070732_107837602	3300005542	Surface Soil	PAKVLSIKPRSEFATRRNWGLQSRDLKTFSVRLKPEGAPVVSGQTFVVEAGS*
Ga0070704_1022252212	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	SIKPRAEYASRKNWGLQSRDLLTFSVRLQPINASVVSGQTFVVEVGGQG*
Ga0068852_1019209641	3300005616	Corn Rhizosphere	FATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0066696_109120781	3300006032	Soil	ARIVSIKPRSEFATRKNWGLHSRDLLTFSVRLQPLQAPVIAGQTFVVEAGSGPGV*
Ga0075425_1025849071	3300006854	Populus Rhizosphere	ARPEGAFFARVVSVKPRSEFATRKNWGIQSRDLKTFSVRLAPLATTVISGQTFVVEAIKT
Ga0075425_1030133611	3300006854	Populus Rhizosphere	DASFFARITSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKR*
Ga0079215_101248751	3300006894	Agricultural Soil	RPRSEFATRRNWGMQSRDLRTFSVRLAPEGLPIVSGQTFVVEAGS*
Ga0075424_1004837461	3300006904	Populus Rhizosphere	KSVEVWPQARPDAKTRARIVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGSAVVSGQTFVVEAGAN*
Ga0097620_1020375242	3300006931	Switchgrass Rhizosphere	PNARFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA*
Ga0114129_124318481	3300009147	Populus Rhizosphere	RFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA*
Ga0105243_110612201	3300009148	Miscanthus Rhizosphere	VSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA*
Ga0075423_115151111	3300009162	Populus Rhizosphere	KVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0105082_11103581	3300009814	Groundwater Sand	FATRRNWGLQSRDLKTFSVRLAPQGASVIAGQTFVVEAGKS*
Ga0105074_10480031	3300010029	Groundwater Sand	AKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVAATVVSGQTFVVEAGTETPRA*
Ga0126384_116238101	3300010046	Tropical Forest Soil	PRSEFATRKNWGLQSRDLKTFSVRLVPQGTTIISGQTFVVEAGRSQS*
Ga0126384_119837902	3300010046	Tropical Forest Soil	RAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRS*
Ga0099796_103345821	3300010159	Vadose Zone Soil	AARVVSVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAAVISGQTFVVEAGRN*
Ga0126370_103696291	3300010358	Tropical Forest Soil	KVVTVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRS*
Ga0126379_121148792	3300010366	Tropical Forest Soil	KPRAEFATRKNWGLQSRDLKTFSVRLAPQNIAVISGQTFVVEAGRN*
Ga0134128_132126422	3300010373	Terrestrial Soil	RSEFATRRNWGLNDRDLKTFSVRLAPQGTSVVSGQTFVVEAGKS*
Ga0126383_114217731	3300010398	Tropical Forest Soil	SIKPRSEFATRKNWGIQSRDLQTFSVRLQPLDASVVAGQTFVVEAGGAHPKA*
Ga0134121_106631891	3300010401	Terrestrial Soil	KPRAEFATRKNWGLHSRDLKTFSVRLSPQNSGVISGQTFVVEAGRN*
Ga0137374_110352271	3300012204	Vadose Zone Soil	AARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVISGQTFVVEAGRN*
Ga0137374_111032762	3300012204	Vadose Zone Soil	RFAARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVISGQTFVVEAGRN*
Ga0137379_102492623	3300012209	Vadose Zone Soil	FARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKH*
Ga0137379_107754452	3300012209	Vadose Zone Soil	VTIKPRAEFATRKNWGLQSCDLKTFSVRLAPQNAGVISGQTFVVEAGRN*
Ga0137378_106822551	3300012210	Vadose Zone Soil	IRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0137366_110785092	3300012354	Vadose Zone Soil	TVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTAVVSGQTFVIEAGRLKD*
Ga0137366_111334871	3300012354	Vadose Zone Soil	ARFAARVVTVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNTSVISGQTFVVEAGRN*
Ga0137368_101966523	3300012358	Vadose Zone Soil	SIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVSGQTFVVEAGTN*
Ga0164300_109323681	3300012951	Soil	IVSIKPRSEFATRKNWGLQSRDLLTFSVRLQPLNESVVSGQTFVVEVGRQG*
Ga0164302_108640702	3300012961	Soil	FATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0164308_104440851	3300012985	Soil	NSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG*
Ga0164307_108997182	3300012987	Soil	DARIAARVVSVKPRAEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG*
Ga0163162_114083662	3300013306	Switchgrass Rhizosphere	FQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG*
Ga0120132_11496211	3300013832	Permafrost	VRVWPQARVGESFPARVISIKPRSEFATRRNWGMQSRDLKTFSVRLKPEGVPLVSGQTFVVEAGS*
Ga0075342_12426232	3300014320	Natural And Restored Wetlands	RFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVDATVVSGQTFVVEAGSETPRA*
Ga0167653_10223361	3300015162	Glacier Forefield Soil	VVSVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNSAVISGQTFVVEAGRN*
Ga0132258_128716262	3300015371	Arabidopsis Rhizosphere	RPDARARAKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN*
Ga0132256_1012347342	3300015372	Arabidopsis Rhizosphere	RSEFATRRNWGLQSRDLKTFSVRLAPQGAAVIAGQTFVVEAGKS*
Ga0132255_1046961492	3300015374	Arabidopsis Rhizosphere	RSEFATRKNWGLQSRDLQTFSVRLQPLKEGAVVSGQTFVVETGSGPPKA*
Ga0132255_1047354791	3300015374	Arabidopsis Rhizosphere	QARGGSPFPARVISIKPRSEFATRRNWGLQSRDLKTFSVRLKPEGGAAVPGQTFVVEAGS
Ga0187785_106348101	3300017947	Tropical Peatland	PDAPFSARIMSIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS
Ga0187788_101660331	3300018032	Tropical Peatland	PDARFQARVVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNGSVVSGQAFVVEAGSGPPKA
Ga0184638_11205891	3300018052	Groundwater Sediment	MPAQVPGKKVEIWPQARPDTRATARVVSIRPRSEFATRRNWGMQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGS
Ga0187765_106774491	3300018060	Tropical Peatland	TRFQAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGSGPPGA
Ga0184631_102752831	3300018070	Groundwater Sediment	RSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVSGQTFVVEAGAN
Ga0184632_102007161	3300018075	Groundwater Sediment	QARPDVRAHARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGA
Ga0210378_103968302	3300021073	Groundwater Sediment	VGKSVEIWPQARPDARARARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLVPEGLPVVAGQTFVVEAGAN
Ga0193750_10482421	3300021413	Soil	WPQARPDASFFARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEAEGVVAGQTFVVEAGKP
Ga0210076_10660281	3300025567	Natural And Restored Wetlands	PQARPNAPFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVSAGRETPRV
Ga0207647_107179231	3300025904	Corn Rhizosphere	SVKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAAVISGQTFVVEAGRN
Ga0207654_107759201	3300025911	Corn Rhizosphere	VTVWPQARPDSRFQARVVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA
Ga0207646_101728143	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	QGKRVRVWPQARPEAPFFARIVSVKPRSEFATRKNWGLQSRDLKTFSVRLAPEGQGVVSGQTFVVEAGKT
Ga0207646_108618252	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	RVRVWPQARPDASFFARVTSIKPRSEFATRRNWGLQSRDLKTFSVRLVPEGEGVVAGQTFVVEAGKH
Ga0207706_113268871	3300025933	Corn Rhizosphere	NSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG
Ga0207709_105507421	3300025935	Miscanthus Rhizosphere	QAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLLPVNATVVSGQTFVVSAGSETPRA
Ga0207665_104526252	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	RGGSPFPARVLSIKPRKEFATRRNFGLQSRDLKTFSVRLKPEGGGVAVAGQTFVVEAGS
Ga0207665_110392802	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	ARIVSIKPRSEFATRKNWGLQSRDLLTFSVRLQPLNESVVSGQTFVVEVGRQG
Ga0207668_117205872	3300025972	Switchgrass Rhizosphere	AFTLGKTVEIWPQARPDARARAKVVSIRPRSEFATRRNWGIRERDLRTFSVRLAPEGLPVVSGQTFVVEAGAN
Ga0207640_104163603	3300025981	Corn Rhizosphere	ARAKVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVEAGAN
Ga0207658_100320331	3300025986	Switchgrass Rhizosphere	PNSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG
Ga0207703_100790234	3300026035	Switchgrass Rhizosphere	RTVMVWPQARPDARFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPPKA
Ga0207648_110796561	3300026089	Miscanthus Rhizosphere	RPRSEFATRRNWGLQSRDLRTFSVRLVPEGLAVVSGQTFVVEAGAN
Ga0209805_13196542	3300026542	Soil	VEIWPQARPDARARARVISIRPRSEFATRRNWGLQSRDLRTFSVRLAPEGLPVVSGQTFVVETGAH
Ga0209996_10243851	3300027395	Arabidopsis Thaliana Rhizosphere	RPDARVRARVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN
Ga0210000_10286512	3300027462	Arabidopsis Thaliana Rhizosphere	RVVSIRPRSEFATRRNWGLQSRDLRTFSVRLAAEGLPIVSGQTFVVEAGAN
Ga0209590_105536861	3300027882	Vadose Zone Soil	SEFATRRNWGLQSRDLRTFSVRLQPVDVKVVSGQTFVIEAGKS
Ga0268265_105933132	3300028380	Switchgrass Rhizosphere	PQARPNARFQAKIVSIKPRSEFANRRNWGVQSRDLQTFSVRLQPVNANVVSGQTFVVSAGSETPRA
Ga0247826_102168181	3300030336	Soil	VWPQARPNSRFQAKIVSIRPRSEFATRKNWGLQSRDLLTFSVRLQPLNAPVVSGQTFVVEVGRQG
Ga0318516_108594381	3300031543	Soil	VSVWAQARPDAPFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS
Ga0318555_107667711	3300031640	Soil	IKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGTGPPGA
Ga0307469_109821201	3300031720	Hardwood Forest Soil	DTRFQAKIVSIKPRSEYATRKNWGLQSRDLQTFSVRLQPLNETVVSGQTFVVEAGSGPPG
Ga0307469_111858441	3300031720	Hardwood Forest Soil	AFPVGQLVRAWPQARPDAPFSVRIISIKPRAEFATRKNWGLQSRDLKTFSVRLAPQGTRVISGQTFVVEAGKS
Ga0318565_106455742	3300031799	Soil	APFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS
Ga0318497_102692472	3300031805	Soil	VWAQARPDAPFSARIISIKPRSEYATRRNWGLQSRDLKTFSVRLQPIDVKVVSGQTFVVEAGKS
Ga0318495_103395792	3300031860	Soil	TRFQAKVVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGSGPPGA
Ga0306923_118661292	3300031910	Soil	TRFQAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGSVVSGQTFVVEAGTGPPGA
Ga0306922_104271293	3300032001	Soil	VVWPQARPDTRFEAKIVSIKPRSEFATRKNWGIQSRDLQTFSVRLQPLNGTVVSGQTFVVEAGSGSPGA
Ga0307471_1008256072	3300032180	Hardwood Forest Soil	PQARPQDRFPARIVSVKPRSEFATRRNWGLQSRDLKTFSVRLAPQGATVIAGQTFVVEAGKS
Ga0307471_1038080821	3300032180	Hardwood Forest Soil	DAPFSARVISIKPRAEFATRKNWGLQSRDLKTFSVRLSPQGVRVISGQTFVVEAGSTPPTNTSTNTPTRTSTP
Ga0307471_1041718122	3300032180	Hardwood Forest Soil	SVKPRSEFATRRNWGLQSRDLRTFSVRLQPVDVKVVSGQTFVVEAGKS
Ga0307472_1010042361	3300032205	Hardwood Forest Soil	VKPRSEFATRRNWGLQSRDLRTFSVRLQPVETKVVAGQTFIVEAGKT
Ga0335084_100432641	3300033004	Soil	PRSEFATRRNWGLQSRDLKTFSVRLAPQGARVIAGQTFVVEAGKS
Ga0316622_1023667292	3300033416	Soil	PNARFQAKIVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPVNATVVSGQTFVVQAGSETPRA
Ga0326726_115198872	3300033433	Peat Soil	VGGSVTVWPQARPDARFAARVVTIKPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGIVSGQTFVVEAGRN
Ga0326723_0552352_391_531	3300034090	Peat Soil	KPRAEFATRKNWGLQSRDLKTFSVRLAPQNAGVVSGQTFVVEAGRN
Ga0364934_0076324_16_180	3300034178	Sediment	VVSIKPRSEFATRKNWGLQSRDLQTFSVRLQPLNATVVSGQTFVVEAGSEPRRA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F098817

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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