Metagenome / Metatranscriptome Family F098855

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F098855
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	109 residues
Representative Sequence	VSDDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSDTDDLWTKIESLQWVLFVIFAIRNGKMVII
Number of Associated Samples	66
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.97 %
% of genes near scaffold ends (potentially truncated)	28.16 %
% of genes from short scaffolds (< 2000 bps)	77.67 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.84

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.369 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (32.039 % of family members)
Environment Ontology (ENVO)	Unclassified (32.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.631 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.03% β-sheet: 0.00% Coil/Unstructured: 35.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.84
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.84
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SCOP family	SCOP domain	Representative PDB	TM-score
a.129.1.2: Group II chaperonin (CCT, TRIC), ATPase domain	d1q3qa1	1q3q	0.69569
f.38.1.4: FucP-like proton/sugar symporter	d3o7qa_	3o7q	0.6716
a.129.1.1: GroEL chaperone, ATPase domain	d1kp8a1	1kp8	0.65249
c.80.1.2: Phosphoglucose isomerase, PGI	d2cxna_	2cxn	0.64513
a.182.1.1: GatB/YqeY domain	d1ng6a_	1ng6	0.61622

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF07452	CHRD	2.91
PF00072	Response_reg	1.94
PF13229	Beta_helix	1.94
PF05048	NosD	1.94
PF07040	DUF1326	1.94
PF01037	AsnC_trans_reg	0.97
PF01734	Patatin	0.97
PF03083	MtN3_slv	0.97
PF05235	CHAD	0.97
PF00903	Glyoxalase	0.97
PF01243	Putative_PNPOx	0.97
PF01471	PG_binding_1	0.97
PF06348	DUF1059	0.97
PF02934	GatB_N	0.97
PF12681	Glyoxalase_2	0.97
PF13469	Sulfotransfer_3	0.97
PF01916	DS	0.97
PF12697	Abhydrolase_6	0.97
PF01432	Peptidase_M3	0.97
PF08734	GYD	0.97
PF01789	PsbP	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	1.94
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.97
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.97
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.97
COG1899	Deoxyhypusine synthase	Translation, ribosomal structure and biogenesis [J]	0.97
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.97
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	0.97
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.97
COG4095	Sugar transporter, SemiSWEET family, contains PQ motif	Carbohydrate transport and metabolism [G]	0.97
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.97
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.97
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
All Organisms	root	All Organisms	45.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
cellular organisms	root	All Organisms → cellular organisms	42.72 %
Viruses	superkingdom	All Organisms → Viruses	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	40.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	16.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	16.50 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	9.71 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	4.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	9.71 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	2.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	9.71 %
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	2.91 %
unclassified Nitrosopumilus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus	2.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1.94 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.37 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2.91 %
Nitrosopumilus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	2.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.91 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Candidatus Nitrosocosmicus hydrocola	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus hydrocola	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10228056	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	968	Open in IMG/M
3300002100\|JGI24809J26612_1073952	Not Available	505	Open in IMG/M
3300003911\|JGI25405J52794_10057654	Not Available	837	Open in IMG/M
3300004463\|Ga0063356_103971671	Not Available	637	Open in IMG/M
3300004463\|Ga0063356_104955834	Not Available	572	Open in IMG/M
3300004480\|Ga0062592_100485682	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1015	Open in IMG/M
3300004480\|Ga0062592_101194353	Not Available	711	Open in IMG/M
3300004643\|Ga0062591_100558097	Not Available	1000	Open in IMG/M
3300005562\|Ga0058697_10012107	All Organisms → cellular organisms → Archaea	2879	Open in IMG/M
3300005981\|Ga0081538_10016014	All Organisms → cellular organisms → Archaea	5771	Open in IMG/M
3300005981\|Ga0081538_10059012	All Organisms → cellular organisms → Archaea	2220	Open in IMG/M
3300005981\|Ga0081538_10091069	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1576	Open in IMG/M
3300006049\|Ga0075417_10052706	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300006844\|Ga0075428_102330132	Not Available	551	Open in IMG/M
3300006845\|Ga0075421_100677693	All Organisms → cellular organisms → Archaea	1201	Open in IMG/M
3300006846\|Ga0075430_100976219	Not Available	698	Open in IMG/M
3300006853\|Ga0075420_100056132	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3497	Open in IMG/M
3300006853\|Ga0075420_100067374	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3171	Open in IMG/M
3300006876\|Ga0079217_11622781	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	517	Open in IMG/M
3300006969\|Ga0075419_11385905	Not Available	524	Open in IMG/M
3300007790\|Ga0105679_10092693	Not Available	1011	Open in IMG/M
3300007790\|Ga0105679_10523277	All Organisms → cellular organisms → Archaea	1249	Open in IMG/M
3300009081\|Ga0105098_10664596	Not Available	549	Open in IMG/M
3300009146\|Ga0105091_10270316	All Organisms → cellular organisms → Archaea	824	Open in IMG/M
3300009157\|Ga0105092_10086605	Not Available	1709	Open in IMG/M
3300009789\|Ga0126307_10003368	All Organisms → cellular organisms → Archaea	10920	Open in IMG/M
3300009789\|Ga0126307_10013586	Not Available	5987	Open in IMG/M
3300009789\|Ga0126307_10036923	All Organisms → cellular organisms → Archaea	3783	Open in IMG/M
3300009789\|Ga0126307_10068462	Not Available	2791	Open in IMG/M
3300009789\|Ga0126307_11680221	Not Available	516	Open in IMG/M
3300009811\|Ga0105084_1012783	Not Available	1316	Open in IMG/M
3300009817\|Ga0105062_1032678	Not Available	913	Open in IMG/M
3300009837\|Ga0105058_1167604	Not Available	539	Open in IMG/M
3300009840\|Ga0126313_10028529	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3800	Open in IMG/M
3300010037\|Ga0126304_10024396	All Organisms → cellular organisms → Archaea	3496	Open in IMG/M
3300010038\|Ga0126315_10089564	Not Available	1747	Open in IMG/M
3300010038\|Ga0126315_10090868	Not Available	1736	Open in IMG/M
3300010038\|Ga0126315_10099303	Not Available	1667	Open in IMG/M
3300010038\|Ga0126315_10099788	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus hydrocola	1664	Open in IMG/M
3300010038\|Ga0126315_10216026	All Organisms → Viruses → Predicted Viral	1160	Open in IMG/M
3300010038\|Ga0126315_10443127	All Organisms → cellular organisms → Archaea	822	Open in IMG/M
3300010039\|Ga0126309_10075231	All Organisms → cellular organisms → Archaea	1682	Open in IMG/M
3300010039\|Ga0126309_10426348	All Organisms → cellular organisms → Archaea	800	Open in IMG/M
3300010039\|Ga0126309_10506094	Not Available	744	Open in IMG/M
3300010040\|Ga0126308_10001862	All Organisms → cellular organisms → Archaea	8709	Open in IMG/M
3300010040\|Ga0126308_10002720	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7666	Open in IMG/M
3300010040\|Ga0126308_10005643	All Organisms → cellular organisms → Archaea	5902	Open in IMG/M
3300010040\|Ga0126308_10028977	All Organisms → cellular organisms → Archaea	3072	Open in IMG/M
3300010040\|Ga0126308_10039560	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2685	Open in IMG/M
3300010040\|Ga0126308_10958650	Not Available	598	Open in IMG/M
3300010041\|Ga0126312_10103220	Not Available	1951	Open in IMG/M
3300010042\|Ga0126314_10181223	All Organisms → cellular organisms → Archaea	1478	Open in IMG/M
3300010042\|Ga0126314_10349305	All Organisms → Viruses → Predicted Viral	1061	Open in IMG/M
3300010042\|Ga0126314_10405196	All Organisms → cellular organisms → Archaea	983	Open in IMG/M
3300010044\|Ga0126310_10180494	Not Available	1371	Open in IMG/M
3300010044\|Ga0126310_11178317	Not Available	614	Open in IMG/M
3300010045\|Ga0126311_10025723	All Organisms → cellular organisms → Archaea	3562	Open in IMG/M
3300010166\|Ga0126306_10005305	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	7751	Open in IMG/M
3300010166\|Ga0126306_10060595	All Organisms → Viruses → Predicted Viral	2646	Open in IMG/M
3300010166\|Ga0126306_10069643	Not Available	2483	Open in IMG/M
3300010166\|Ga0126306_10164153	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1658	Open in IMG/M
3300010362\|Ga0126377_12087120	All Organisms → cellular organisms → Archaea	643	Open in IMG/M
3300012897\|Ga0157285_10120693	Not Available	746	Open in IMG/M
3300012909\|Ga0157290_10079630	All Organisms → cellular organisms → Archaea	922	Open in IMG/M
3300012912\|Ga0157306_10156859	Not Available	725	Open in IMG/M
3300012914\|Ga0157297_10184691	Not Available	709	Open in IMG/M
3300014487\|Ga0182000_10465653	Not Available	578	Open in IMG/M
3300018000\|Ga0184604_10292108	Not Available	575	Open in IMG/M
3300018073\|Ga0184624_10403542	Not Available	606	Open in IMG/M
3300018081\|Ga0184625_10174650	All Organisms → cellular organisms → Archaea	1124	Open in IMG/M
3300018466\|Ga0190268_10001950	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	4053	Open in IMG/M
3300018466\|Ga0190268_11285601	Not Available	615	Open in IMG/M
3300018469\|Ga0190270_10520187	Not Available	1139	Open in IMG/M
3300018469\|Ga0190270_11577586	Not Available	707	Open in IMG/M
3300018469\|Ga0190270_11794111	Not Available	669	Open in IMG/M
3300018481\|Ga0190271_12682992	All Organisms → cellular organisms → Archaea	598	Open in IMG/M
3300019356\|Ga0173481_10275548	Not Available	770	Open in IMG/M
3300019884\|Ga0193741_1001204	All Organisms → cellular organisms → Archaea	7594	Open in IMG/M
3300020003\|Ga0193739_1000168	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	17779	Open in IMG/M
3300020003\|Ga0193739_1115111	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	670	Open in IMG/M
3300021412\|Ga0193736_1015313	Not Available	985	Open in IMG/M
3300023057\|Ga0247797_1025821	Not Available	777	Open in IMG/M
3300027056\|Ga0209879_1061596	Not Available	601	Open in IMG/M
3300027075\|Ga0214467_1047276	All Organisms → cellular organisms → Archaea	509	Open in IMG/M
3300027424\|Ga0209984_1023332	Not Available	855	Open in IMG/M
3300027552\|Ga0209982_1062231	Not Available	608	Open in IMG/M
3300027614\|Ga0209970_1124621	Not Available	500	Open in IMG/M
3300027873\|Ga0209814_10115849	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300027909\|Ga0209382_12224754	Not Available	518	Open in IMG/M
3300030513\|Ga0268242_1082236	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	648	Open in IMG/M
3300031092\|Ga0308204_10124062	Not Available	739	Open in IMG/M
3300031847\|Ga0310907_10763129	Not Available	539	Open in IMG/M
3300032075\|Ga0310890_10211094	Not Available	1339	Open in IMG/M
3300032075\|Ga0310890_10293330	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1166	Open in IMG/M
3300032075\|Ga0310890_10570496	Not Available	871	Open in IMG/M
3300032075\|Ga0310890_10664645	Not Available	813	Open in IMG/M
3300032126\|Ga0307415_100680739	Not Available	926	Open in IMG/M
3300032159\|Ga0268251_10067218	All Organisms → cellular organisms → Archaea	1214	Open in IMG/M
3300033551\|Ga0247830_11265465	Not Available	589	Open in IMG/M
3300034151\|Ga0364935_0028912	Not Available	1546	Open in IMG/M
3300034151\|Ga0364935_0070426	Not Available	1044	Open in IMG/M
3300034151\|Ga0364935_0140878	Not Available	759	Open in IMG/M
3300034690\|Ga0364923_0042080	Not Available	1069	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.61%
Host-Associated	Host-Associated	20.39%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.79%
Plants	Host-Associated → Plants	20.39%
Aquatic	Environmental → Aquatic	5.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Floodplain	Environmental → Terrestrial → Floodplain	3.88%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Sediment	Environmental → Aquatic → Sediment	2.91%
Roots	Host-Associated → Plants → Roots	2.91%
Phylloplane	Host-Associated → Plants → Phylloplane	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.71%
Sand	Environmental → Terrestrial → Soil → Sand	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	51.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.71%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.91%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.97%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	32.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.53%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	3.88%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.94%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300002100	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um MDA	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021412	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m1	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027075	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0 HiSeq	Environmental	Open in IMG/M
3300027424	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027614	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_102280561	3300000858	Soil	VTVDTEMLKEFLYDKIAQRKNRIHPQHSPRFNYDMQLEIDCYEWVIEKIEVNKITFDRLERIIKATIKDLEKRKDKAMMRTDTDNLWTKIESLQWVLFVIFAIKNDRMVVI*
JGI24809J26612_10739521	3300002100	Soil	STLLVTDDTERLEGFLYDRITQRKKRIHPQHSPRFNHDMQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKELEKRKDKAMIRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI*
JGI25405J52794_100576541	3300003911	Tabebuia Heterophylla Rhizosphere	VTDDTERLKGFLYDRITQRKRRIHPQHSPRFNHDTQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKDLEKRKDKAMIRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI*
Ga0063356_1039716712	3300004463	Arabidopsis Thaliana Rhizosphere	ERLKGFLYDKITQRKKRIHPAHSPRFKIDMQLEIDCYEWVLGKIEVNKIPFDRLERIIQSTIKDLEKRKDKAMMRTDTDNLWTKIESLQWVLFVILL*
Ga0063356_1049558341	3300004463	Arabidopsis Thaliana Rhizosphere	VSDDSERLKGFLYEKLAKRKKQIHPENSLRFNHDLQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFAVRSKKMVII*
Ga0062592_1004856821	3300004480	Soil	HNIRFNHDLQLEIDCIEWALKEIEVNKLPMDRLEAVTRVMIRDLEKRKDKAMKRSDTDDFWIKIESLQWVLLLSLLSRMKRWL*
Ga0062592_1011943531	3300004480	Soil	LHAKIDKRKKQIHPAHNIRFNHDLRLEIDCIEWVLKKIEVNKIPNDRLEAVIRSTIRDLEKRKDKAMDRSDTDDFWIKIESLQWVLFVIFAITNGRMIVIPV*
Ga0062591_1005580972	3300004643	Soil	LHAKIDKRKKQIHQAHNIRFKPNDRLEAVIRSTIRDLEKRKDKAMDRSDTDDFWIKIESLQWVLFVIFAITNGRMIVIPV*
Ga0058697_100121075	3300005562	Agave	VVTDSDSDRLREFLYKKIAKRKKQIHPAHSPRFNHDMHLEIDCIDGALQNIEVNELPNNRLEGVIKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLYVIFAIRNGRLVVI*
Ga0081538_100160142	3300005981	Tabebuia Heterophylla Rhizosphere	VTDDIERLKGFLNDKIAHRRKKIHPAHSPRFNHDMQLEIDCYEWVLGKIETNKIPFDRLERVIKATIKDIEKRKDKAVVRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI*
Ga0081538_100590121	3300005981	Tabebuia Heterophylla Rhizosphere	LQLIFIIFWTSTPLVIDDTKKLKGFLYDKITQRKKQIHPAHSPRFNHEMQLEIDCYEWVIAKMEVNKIPFNKLERIIHATIKDLEKRKDKAMVRTDTDNLWTKIESLQWVLFVIFAIKNDKMIVI*
Ga0081538_100910692	3300005981	Tabebuia Heterophylla Rhizosphere	VTDDTEKLKGFLYGRITQRKKRIHPQHSPRFNHDMQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKDLEKRKDKAMIRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI*
Ga0075417_100527064	3300006049	Populus Rhizosphere	VTDDTERLKGFLYDRITQRKKRIHPQHSPRFNYDTQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKDLEKRKDKAMIRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI*
Ga0075428_1023301321	3300006844	Populus Rhizosphere	DDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSETDELWTKIESLQWVLFVIFAIRNGKMVII*
Ga0075421_1006776931	3300006845	Populus Rhizosphere	VSDDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSETDELWTKIESLQWVLFVIFAIRNGKMVII*
Ga0075430_1009762192	3300006846	Populus Rhizosphere	VSDDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSETDVLWTKIESLQWVLFVIFAIRNGKMVII*
Ga0075420_1000561327	3300006853	Populus Rhizosphere	VSDDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSDTDDLWTKIESLQWVLFVIFAIRNGKMVII*
Ga0075420_1000673744	3300006853	Populus Rhizosphere	VVINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKTMRRPDTDDLWTKIETLQWVLYIIFAIKNERMVVI*
Ga0079217_116227812	3300006876	Agricultural Soil	VTINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIECIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDNLWTKIETLQWVLYIIFAIKNERMVVI*
Ga0075419_113859052	3300006969	Populus Rhizosphere	VVINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDDLWTKIETLQWVLYIIFAIKNERMVVI*
Ga0105679_100926932	3300007790	Soil	VTTGSDSDSEKLREFLYAKIAKRKKKIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGLIRRTIKDLEIRKDKAMRRPDTDDLWTKIETLQWVLYVIFAIKNE
Ga0105679_105232772	3300007790	Soil	VTINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDNLWTKIETLQWVLYIIFAIKNERMVVI*
Ga0105098_106645961	3300009081	Freshwater Sediment	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDIQLEIDSIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSDTDDLWTKIESLQWVLFVIFAIRKGKIVII*
Ga0105091_102703161	3300009146	Freshwater Sediment	LLHAKIDKRKKQIHPAHNPRFNHDLQLEIDCIEWALKKVEVNKIPNDRLEGVIRTMIKDLEKRKDKAMKRSDTDDLWTKIESFQWVLFVIFAIKNGNMVVI*
Ga0105092_100866052	3300009157	Freshwater Sediment	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDIQLEIDSIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSDTDDLWTKIESLQWVLFVIFAIRNGKMVII*
Ga0126307_1000336811	3300009789	Serpentine Soil	MAINSDSDKLRDFLHAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKMDVNKIPNDRLDSRIRSMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVLFAIRNERMVVI*
Ga0126307_100135862	3300009789	Serpentine Soil	VAINSDSERLREFLHAKIAKRKKKIHPKHSARFNHDMRLQIDCIEWVLEKIEVNNIPNDRLDGIRSMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVIFAIKNERMVVI*
Ga0126307_100369234	3300009789	Serpentine Soil	MAKRKKKIHPEHSARFNHDMQLHIDCIEWVLEKIEENKIPNDGLDGHIRSMIKNLEKRKDKAMIRSDTDDLWIKIETLQWVLYVIFAIKNERMVVI*
Ga0126307_100684624	3300009789	Serpentine Soil	MAIHSDSGRLREFLHQRIAKRKKQIHPEQSARFNHDMQLQIDCIEWILEKIEVNKISNDRLEGLIRNMIKDLEKRKEKATRRPDTDDLWIKIETLQWVLYVIFAIKNERMVVI*
Ga0126307_116802211	3300009789	Serpentine Soil	VVVNTDSDKLREFLNAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGHIRSMIKNLEKRKDKAMIRSDTDDLWTRIETLQWVLYVIFAIKNERMVV
Ga0105084_10127833	3300009811	Groundwater Sand	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALK*
Ga0105062_10326781	3300009817	Groundwater Sand	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVIT*
Ga0105058_11676041	3300009837	Groundwater Sand	KQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVII*
Ga0126313_100285294	3300009840	Serpentine Soil	LRRNKSIPPAKYQVIDSSITTLTESVDPYYLLTFILFVTDNTDSDRLKELLHAKITKRKRQIHPAHNSRFNHDMQLEIDCIEWALQKIEVNKLPNDRLEGVIKTMIKDLEKRKDKAMIRSETDDLWTKTETLQWVLYIIFAIRNGNMVMV*
Ga0126304_100243964	3300010037	Serpentine Soil	VATSSNSDKLIEFLHAKIAKRKKKIHPEHSARFNHDMQLHIDCIEWVLEKIEENKIPNDGLDGHIRSMIKNLEKRKDKAMIRSDTDDLWIKIETLQWVLYVIFAIKNERMVVI*
Ga0126315_100895643	3300010038	Serpentine Soil	KELLHEKIAKRKKQIHPAHNQRFNHDMQLEIDCIEWALQKIEVHKIPNERLEGVVKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFVIFAIKNERMVVI*
Ga0126315_100908682	3300010038	Serpentine Soil	LFSDSDSDRLRKFLHTKIAKRKKQIHPAHIPRFNHDLQLKTDCIKRALQKIEVNKIPNDRLEGLIRNMIKDLEKRKDKAMIRPETDDLWTKIETLQWVLYVIFAIRNGRMVVFKLLPSETEPTGI*
Ga0126315_100993032	3300010038	Serpentine Soil	VTDSGSDRLRKFLHAKIKIAKRKKQIHPVYTQDMQLEIDCVKWALQKIEVNKLPNDRLEGINKTMIKDLKKRKDKAMIRPETDDLWTKIETLQWVLFVIFAIRNGQMVVIP*
Ga0126315_100997883	3300010038	Serpentine Soil	LWLLIQIQIDSKFLHKKIAKRKKQIHPVHNPRFNHNIQLEIDCVKWALQKIEVNKVPNDRLEGIIRAMIKDLEKRKGKAMIRSDTDDLWTKVETLQWILYVIFTIRNGRMVVV*
Ga0126315_102160262	3300010038	Serpentine Soil	LRRNKSIPPAKYQVIDSSITTLTESVDPYYLLTFILFVTDNTDSDRLKELLHAKITKRKRQIHPAHNSRFNHDMQLEIDCIEWALQKIEVNKLPNDRLEGVIKTMIKDLEKRKDKAMIRSETDDLWTKIETLQWVLYIIFAIRNGNMVMV*
Ga0126315_104431272	3300010038	Serpentine Soil	VATTNSDSDRLREFLYKKIAKRKDQIHPAHSPRFNHDMQLEIDCIEWALHKIEVNKLSNNRLEGVTKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFVIFAIRNGQMIVV*
Ga0126309_100752312	3300010039	Serpentine Soil	VTFESDTNRLKEFLNTKIAKRRERIHPAHNPRFNHDLQLEIDCIEWALMKIEANKIPIDRLEAVIRSTIKDLEKRKDKAMERSDTDDFSIKIESLQWVLFVIFAIKNGKLVVI*
Ga0126309_104263481	3300010039	Serpentine Soil	KIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGNIRSMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVLFAIRNERMVVI*
Ga0126309_105060942	3300010039	Serpentine Soil	VTHSDSDRLRKFLHAKIAKRKKQIHPAHNPRFNHDMQLEIDCIEWALQKIEVNKIFNNRLEGVIKTMIKDLEKRKDKAMIGSDTDDLWTKIETLQWVLYVIFAIRNKQIVVI*
Ga0126308_100018625	3300010040	Serpentine Soil	MRKEKSRFIHPTHSPRFNHDMQLEIDCIKWALQKIEANKLPNNRLEGVIRTMIKDLEKRKDKARIRSDTDDLWTKIETLQWVLFIILAIRNGRLVII*
Ga0126308_100027209	3300010040	Serpentine Soil	VVADSDSDRLREFLYKKIAKRKKQIHPAHSPRFNHDMQLEIDCIKWALQKIEVNKLPNNRLEGVIKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFIILAIRNGRLV
Ga0126308_100056433	3300010040	Serpentine Soil	MAIQSDSGRLREFLHERIAKRKKQIHPEHSARFNHDMQLQIDCIEWILEKIEVNKIPNDRLEGLIRNMIKDLEKRKEKATRRPDTDDLWIKIETLQWVLYVISAIKNGRMVVI*
Ga0126308_100289774	3300010040	Serpentine Soil	MVRETQINPYYLLASIFLMAINSDSNKLREFLNAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGHIRSMIKNLEKRKDKAMIRSDTDDLWTRIETLQWVLYVIFAIKNERMVVI*
Ga0126308_100395603	3300010040	Serpentine Soil	MAINSDSDKLREFLHAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGRIRTMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVLFAIRNERMVVI*
Ga0126308_109586501	3300010040	Serpentine Soil	VYTNGLEGLDDDQVDPYYLPTSNFRVATNSDSERLREFLHAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNDRLDGHIRSMIKNLEKRKDKAMIRSDTDDIWTQIETLQWVLYVLFAIRN
Ga0126312_101032202	3300010041	Serpentine Soil	VVADSDSDRLREFLYKKIAKRKKQIHPAHSPRFNHDMQLEIDCIKWALQKIEVNKLPNNRLEGVIKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFIILAIRNGRLVMV*
Ga0126314_101812232	3300010042	Serpentine Soil	MRKEKSRFIHPTHSPRFNHDMQLEIDCIKWALQKIEANKLPNNRLEGVIRTMIKDLEKRKDKARIRSDTDDLWTKIETLQWVLFIILAIRNRRLVII*
Ga0126314_103493052	3300010042	Serpentine Soil	VTDSDSDRLREFLYAKIAKRKKQIHPAHNPRFNHDMQLEIDCIEWALHKIEVNKLPNDRLEGVIKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFVIFAIRNGRMVMMTAVA
Ga0126314_104051962	3300010042	Serpentine Soil	MVRETQINPYYLLASIFLMAINSDSNKLREFLNAKIAKRKKQIHPEHSARFNHDMQLQIDCIEWVLEKIEVNKIPNNRLDGHIRSMIKNLEKRKDKAMIRSDTDDLWTQNETLQW
Ga0126310_101804941	3300010044	Serpentine Soil	VTDSDSDRLRKFLHAKIAKRKKQIHPAHNPRFNHDMQLEIDCIEWALQKIEVNKIFNNRLEGVIKTMIKDLEKRKDKAMIRSATDDLWTKIETLQ*
Ga0126310_111783171	3300010044	Serpentine Soil	PAHNPRFNHDIQLEIDCIEWALQKIEVNTLPNDRLESVIKTMIKDLEKRKDKAMIRPETDDLWTKIETLQCVLYVIFAIKNGNMVSDLKTIFIHSRSGSYQSP*
Ga0126311_100257235	3300010045	Serpentine Soil	MVRETQINPYYLPTSIFIVAINSDSNKLREFLYAKIAKRKKKIHPEHSARFNHDMQLKIDCIEWVLEKIEVNKIPNDRLDGNIRSMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVIFAIKNERMVII*
Ga0126306_100053059	3300010166	Serpentine Soil	VTDNTDSDRFKELLHAKITKRKRQIHPAHNSRFNHDMQLEIDCIEWALQKIEVNKLPNDRLEGVIKTMIKDLEKRKDKAMIRSETDDLWTKTETLQWVLYIIFAIRNGNMVMV*
Ga0126306_100605953	3300010166	Serpentine Soil	MAINSDSDKLRDFLHAKIAKRKKQIHPEHSARFNHDMQLRIDRIEWVLEKMDVNKIPNDRLDSRIRSMIKNLEKRKDKAMIRSDTDDLWTQIETLQWVLYVLFAIRNERMVVI*
Ga0126306_100696432	3300010166	Serpentine Soil	MAIHSDSGRLREFLHQRIAKRKKQIHPEQSARFNHDIQLQIDCIEWILEKIEVNKISNDRLEGLIRNMIKDLEKRKEKATRRPDTDDLWIKIETLQWVLYVIFAIKNERMVVI*
Ga0126306_101641532	3300010166	Serpentine Soil	VNNNNYVDPYYPLTFNLIVATNSERLREFLHAKIAKRNKQIHPAHNPRFNHDMQLEIDCIEWALQKIEVNKIPNDRLEGVIKTMIKDLEKRNDKAMIRSATDDLWTKIETLQWVLYVIFAIRKGNMVII*
Ga0126377_120871201	3300010362	Tropical Forest Soil	VTDDTERLKGFLYDRITQRKRRIHPQHSPRFNHDTQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKDLEKRKDKAMIRTDTDNLWTKIESLQWVLFVMFAIRNDRMVVI*
Ga0157285_101206932	3300012897	Soil	LLADDTNSNILIEFLHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWIKIESLQWVLFVIFAIKNEIMVVI*
Ga0157290_100796303	3300012909	Soil	LHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWIKIESLQWVLFVIFAIKNGNMVII*
Ga0157306_101568591	3300012912	Soil	LHAKIDKRKKQIHPADNIRFNHDLRLEIDCIEWVLKKIEVNKIPNDRLEAVIRSTIRDLEKRKDKAMERTDTDDFWIKIESLQWVLFVIFAIKNGRMVVI*
Ga0157297_101846911	3300012914	Soil	LHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWTKIESLQWVLFVIFVIKNERMVVI*
Ga0182000_104656532	3300014487	Soil	VVINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDNLWTKIETLQ*
Ga0184604_102921081	3300018000	Groundwater Sediment	VTFESDTNRLKEFLNTKIAKRRERIHPAHNPRFNHDLQLEIDCIEWALMKIEANKIPIDRLEAVIRSTIKDLEKRKDKAMERSDTDDLWTKIESLQWVLFVIFAIKNGKYL
Ga0184624_104035421	3300018073	Groundwater Sediment	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDSLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVIT
Ga0184625_101746501	3300018081	Groundwater Sediment	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFAIRSKKIVII
Ga0190268_100019507	3300018466	Soil	VAINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDDLWTKIETLQWVLYIIFAIKNERMVVI
Ga0190268_112856012	3300018466	Soil	LLHEKIDKRKKRIHLANNPRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEGVTRVMIKDLEKRKDKALERSDTDDLWIKIESLQWILFVIFAIRNERMVVI
Ga0190270_105201871	3300018469	Soil	IIPVSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFAIRSKKIVII
Ga0190270_115775861	3300018469	Soil	AKIDKRKKQIHPAHNPRFNHDLQLEIDCIEWPLKKIEVNKIPNDRLEAVIRAMIRDLEKRKDKAMKRSDTDDLWIKIESLQWVLFVIFAIKNGNMVVI
Ga0190270_117941111	3300018469	Soil	RKKRIHPEHNRRFNHDMQLEIDCYEWVLGKIEVNKIPFDRLERIIKATVRELEKIKGKAMVRTDTDNLWTKIESLQWVLFVTFAIRNGKMVIV
Ga0190271_126829922	3300018481	Soil	VSILIIFQFYPCLLADDTNTNKLIEFLHAKIDKRKNQIHPAHNPRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEAVTRVMIKDLEKRKDKAMKRSDADDFWIKIESLQWVLFVIFAIKNGNMVVI
Ga0173481_102755481	3300019356	Soil	MEFLHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALKKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWIKIESLQWVLFVIFAIKNEIMVVI
Ga0193741_10012049	3300019884	Soil	VPILIIFQFSIISVSDDSERLKGFLYEKIAKRKKQIHPENSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVII
Ga0193739_100016814	3300020003	Soil	VSDDSERLKGFLYEKIAKRKKQIHPENSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVII
Ga0193739_11151112	3300020003	Soil	VSDDSETLKGFLYDKIAQRKKRIHPEHSPRFNHDMQLEIDCYEWVLEKIELNKIPFDRLERIIKATIKDLEKRKNKAMVRTDTDNLWTKIEFLQWVLFVIFVIKNDRMVVI
Ga0193736_10153132	3300021412	Soil	VKEITGEWNKIVPILIIFQFSIISVSDDSERLKGFLYEKIAKRKKQIHPENSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVII
Ga0247797_10258212	3300023057	Soil	QFLHSKVDKRKRQIHPAHNIRYNHDLQLEIECIEWALKKMEVNKLPMDRLEAVIRVMIKDLEKRKDKAMKRSDTDDLWTKIESLQWGSICYLCYKE
Ga0209879_10615961	3300027056	Groundwater Sand	AKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDGLWTKIESLQWVLFVIFALRSKKIVIT
Ga0214467_10472762	3300027075	Soil	KIDKRKKQIHPAHNPRFNHDLQLEIDCIEWPLKKIEVNKIPNDRLEAVIRAMIRDLEKRKDKAMERSDTDDFWIKIESLQWVLFVIFAIKNGNMVVI
Ga0209984_10233321	3300027424	Arabidopsis Thaliana Rhizosphere	LHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALRKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWIKIESLQWVLFVIFAIKNERMVVI
Ga0209982_10622311	3300027552	Arabidopsis Thaliana Rhizosphere	LHAKIDKRKKQIHPAHNIRFNHDLRLEIDCIEWVLKKIEVNKIPNDRLEAVIRSTIRDLEKRKDKAMDRSDTDDFWIKIESLQWVLFVIFAITNGRMIVIPV
Ga0209970_11246212	3300027614	Arabidopsis Thaliana Rhizosphere	LHAKIDKRKKQIHPAHNIRFNHDLQLEIDCIEWALRKIEVNKLPIDRLEGVIRVTIKDLEKRKDKAMKRSDTDDLWIKIESLQWVYLFAIKNENMVVI
Ga0209814_101158492	3300027873	Populus Rhizosphere	VTDDTERLKGFLYDRITQRKKRIHPQHSPRFNYDTQLEIDCYEWVIEKTEVNKIPFDRLERVIKATIKDLEKRKDKAMIRTDTDNLWTKIESLQWVLFVIFAIRNDRMVVI
Ga0209382_122247541	3300027909	Populus Rhizosphere	VSDDSERLKGFLYEKIAKRKKLIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKAMVRSETDELWTKIESLQWVLFVIFAIRNGKMVII
Ga0268242_10822361	3300030513	Soil	VVINSDSDRLREFLQAKIAKRKKQIHPEHSARFNHDMRLQIDCIEWVLEKIEVDKVHNDRLDGLIRKMIKDLEIRKDKAMRRPDTDDLWTKIETLQWVLYIIFAIKNERMVVI
Ga0308204_101240621	3300031092	Soil	KRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFAIRNGKMVIT
Ga0310907_107631292	3300031847	Soil	RKRQIHPAHNIRFNHDLQLEIDCIEWALNKIEVNKLPIDRLEAATRVMIKDLEKRKDKAMKRSDTDDFWIKIESLQRFYLLSLL
Ga0310890_102110942	3300032075	Soil	VIAETDSTRIKVFLHAKIDKRKKHLQPTHNPRFNHDLQLEIDCIEWAIKKTKVNKIPNDRLEPVIQSMVKDLEKRKDKAMKRSDTDDFWIKIESLQWVLFVFFAIRNGKIVII
Ga0310890_102933302	3300032075	Soil	MILIIFQFYPSPLADDTNKLKEFLHAKIDKRKKQIHPAHNPRFNYDQQLEIDCIEWGLKKIEVNKIPNDRLEGVIRSMIKDVEKRKDKAIKRSDTDDFWIKIESPQWVLFVIFAIRMEGW
Ga0310890_105704961	3300032075	Soil	LATDTYRLKKYLHAKRAKRQKQIHPAHNPRFNHDLQLEIDCIEWALKKIEVNKIPSDRLEAVIRSTIKDLEKRKDKAMKRSDTDDFWIKIESLQRFYLLSLL
Ga0310890_106646452	3300032075	Soil	LHAKIDKRKKQIHPAHNIRFNHDLRLEIDCIEWVLKKIEVNKIPNDRLEAVIRSTIRDLEKRKDKAMARSDTDDFWIKIESLQWVLFVILL
Ga0307415_1006807391	3300032126	Rhizosphere	AKRKDQIHPAHSPRFNHDMQLEIDCIEWALHKIEVNKLSNNRLEGVTKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLFVIFAIRNGQMVVV
Ga0268251_100672182	3300032159	Agave	MLTDSDSNRLREFLYKKIAKRKKQIHPAHSPRFNHDMHLEIDCIDGALQNIEVNELPNNRLEGVIKTMIKDLEKRKDKAMIRSDTDDLWTKIETLQWVLYVIFAIRNGQMVVV
Ga0247830_112654651	3300033551	Soil	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLDKRKDKAMIRSDTDDLWTKIESLQWVL
Ga0364935_0028912_803_1138	3300034151	Sediment	VSDDSERLKGFLYEKIAKRKKQIHPEHSLRFNHDMQLEIDCIEWALQKIEVNKIPNDRLERVVRATIKDLEKRKDKAMIRSDTDDLWTKIESLQWVLFVIFALRSKKMVIT
Ga0364935_0070426_687_1022	3300034151	Sediment	VTNDTERLEGFLCDKIAQRKKRIHPEHSPRFKHDMQLEIDCYEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKATVRTDTGNLWTKIESLQWVLFVIFAIRNGNMVIV
Ga0364935_0140878_376_711	3300034151	Sediment	VTDDTERLKGFLNDKIAQRKKRIHPEHSPRFNHDMELEIDCYDWVLGKIDVNKIPFDRLERIIKATIKDLEMRKDKAMVRTDTDNLWTKIESLQWVLFVIFAIKNDRMVVI
Ga0364923_0042080_59_394	3300034690	Sediment	VTNDTERLEGFLCDKIAQRKKRIHPEHSPRFKHDMQLEIDCYEWALQKIEVNKIPNDRLERVIRATIKDLEKRKDKATVRTDTDNLWTKIESLQWVLFVIFAIRNGNMVIV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098855

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences