Metagenome / Metatranscriptome Family F098966

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F098966
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	48 residues
Representative Sequence	LQIDNTEDDAFHMLGSAIIDAVADDEEHTAGLFEVWSELEEQRKLS
Number of Associated Samples	79
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.71 %
% of genes near scaffold ends (potentially truncated)	81.55 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (68.932 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.010 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.544 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.05% β-sheet: 0.00% Coil/Unstructured: 45.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01425	Amidase	11.65
PF04828	GFA	7.77
PF08241	Methyltransf_11	4.85
PF00497	SBP_bac_3	2.91
PF14534	DUF4440	2.91
PF00155	Aminotran_1_2	1.94
PF13521	AAA_28	1.94
PF09650	PHA_gran_rgn	1.94
PF07366	SnoaL	1.94
PF05378	Hydant_A_N	0.97
PF04273	BLH_phosphatase	0.97
PF01042	Ribonuc_L-PSP	0.97
PF01546	Peptidase_M20	0.97
PF05015	HigB-like_toxin	0.97
PF13545	HTH_Crp_2	0.97
PF11253	DUF3052	0.97
PF00043	GST_C	0.97
PF00128	Alpha-amylase	0.97
PF02265	S1-P1_nuclease	0.97
PF13551	HTH_29	0.97
PF00248	Aldo_ket_red	0.97
PF07866	DUF1653	0.97
PF01208	URO-D	0.97
PF01625	PMSR	0.97
PF01068	DNA_ligase_A_M	0.97
PF00083	Sugar_tr	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	11.65
COG3791	Uncharacterized conserved protein	Function unknown [S]	7.77
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.94
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.97
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.97
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.97
COG0407	Uroporphyrinogen-III decarboxylase HemE	Coenzyme transport and metabolism [H]	0.97
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.97
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.97
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.97
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.97
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.97
COG3453	Predicted phosphohydrolase, protein tyrosine phosphatase (PTP) superfamily, DUF442 family	General function prediction only [R]	0.97
COG3549	Plasmid maintenance system killer protein	Defense mechanisms [V]	0.97
COG4728	Uncharacterized conserved protein, DUF1653 family	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.93 %
Unclassified	root	N/A	31.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.93 %
Unclassified	root	N/A	31.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.93 %
Unclassified	root	N/A	31.07 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.60 %
Unclassified	root	N/A	31.07 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.91 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	1.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.89 %
Unclassified	root	N/A	31.07 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.91 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.07 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	16.50 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.91 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.50 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2.91 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.91 %
Rhodovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae	1.94 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.97 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.50 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	2.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.91 %
Rhodovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Rhodovibrio	1.94 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.50 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	2.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.91 %
Rhodovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Rhodovibrio	1.94 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.07 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.50 %
Acidisphaera sp. L21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L21	2.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.91 %
Rhodovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Rhodovibrio	1.94 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	1.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100504323	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300003351\|JGI26346J50198_1035767	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300004157\|Ga0062590_102606339	Not Available	537	Open in IMG/M
3300005179\|Ga0066684_10735063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	658	Open in IMG/M
3300005335\|Ga0070666_10499281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L21	882	Open in IMG/M
3300005764\|Ga0066903_107140650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	578	Open in IMG/M
3300005764\|Ga0066903_107508793	Not Available	562	Open in IMG/M
3300005764\|Ga0066903_108834344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300006800\|Ga0066660_10342867	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300009792\|Ga0126374_10497181	Not Available	878	Open in IMG/M
3300009792\|Ga0126374_11575010	Not Available	542	Open in IMG/M
3300010046\|Ga0126384_10376163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1192	Open in IMG/M
3300010048\|Ga0126373_10911501	Not Available	943	Open in IMG/M
3300010359\|Ga0126376_12939863	Not Available	526	Open in IMG/M
3300010359\|Ga0126376_13021479	Not Available	520	Open in IMG/M
3300010361\|Ga0126378_11599866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300010361\|Ga0126378_12710010	Not Available	566	Open in IMG/M
3300010376\|Ga0126381_100286690	Not Available	2249	Open in IMG/M
3300010376\|Ga0126381_100733248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1415	Open in IMG/M
3300010376\|Ga0126381_100965976	Not Available	1228	Open in IMG/M
3300010376\|Ga0126381_101417570	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300010376\|Ga0126381_104225789	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300010376\|Ga0126381_104486518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	539	Open in IMG/M
3300011269\|Ga0137392_10943371	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300011270\|Ga0137391_10088206	All Organisms → cellular organisms → Bacteria → Proteobacteria	2681	Open in IMG/M
3300012203\|Ga0137399_10079159	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2490	Open in IMG/M
3300012205\|Ga0137362_10027773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4447	Open in IMG/M
3300012205\|Ga0137362_10152899	All Organisms → cellular organisms → Bacteria → Proteobacteria	1974	Open in IMG/M
3300012349\|Ga0137387_11287902	Not Available	512	Open in IMG/M
3300012582\|Ga0137358_11007505	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300012907\|Ga0157283_10096011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	785	Open in IMG/M
3300012918\|Ga0137396_10073050	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	2400	Open in IMG/M
3300012971\|Ga0126369_12568685	Not Available	594	Open in IMG/M
3300012971\|Ga0126369_13490478	Not Available	515	Open in IMG/M
3300013297\|Ga0157378_12313359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Rhodovibrio	589	Open in IMG/M
3300013306\|Ga0163162_11427311	All Organisms → cellular organisms → Bacteria → Proteobacteria	788	Open in IMG/M
3300013308\|Ga0157375_12886177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L21	574	Open in IMG/M
3300014164\|Ga0181532_10757873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300014325\|Ga0163163_12274215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Rhodovibrio	601	Open in IMG/M
3300015264\|Ga0137403_10286586	Not Available	1546	Open in IMG/M
3300015371\|Ga0132258_12652440	All Organisms → cellular organisms → Bacteria → Proteobacteria	1251	Open in IMG/M
3300015374\|Ga0132255_104831916	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300017943\|Ga0187819_10740028	Not Available	553	Open in IMG/M
3300018083\|Ga0184628_10242663	Not Available	945	Open in IMG/M
3300020580\|Ga0210403_10572535	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300020580\|Ga0210403_10600465	Not Available	889	Open in IMG/M
3300021168\|Ga0210406_10559619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300021168\|Ga0210406_10625702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300021401\|Ga0210393_10551977	Not Available	941	Open in IMG/M
3300021479\|Ga0210410_10773539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	844	Open in IMG/M
3300022532\|Ga0242655_10321165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300025900\|Ga0207710_10117924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1265	Open in IMG/M
3300025903\|Ga0207680_10438923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L21	926	Open in IMG/M
3300025960\|Ga0207651_12113788	Not Available	506	Open in IMG/M
3300026557\|Ga0179587_10522237	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300027174\|Ga0207948_1030422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300027502\|Ga0209622_1013429	All Organisms → cellular organisms → Bacteria → Acidobacteria	1397	Open in IMG/M
3300027812\|Ga0209656_10444760	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300027842\|Ga0209580_10524647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	589	Open in IMG/M
3300028906\|Ga0308309_10020186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4382	Open in IMG/M
3300029636\|Ga0222749_10176796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1054	Open in IMG/M
3300031231\|Ga0170824_120548487	All Organisms → cellular organisms → Bacteria → Proteobacteria	602	Open in IMG/M
3300031474\|Ga0170818_113405507	Not Available	538	Open in IMG/M
3300031573\|Ga0310915_10222709	Not Available	1323	Open in IMG/M
3300031640\|Ga0318555_10261970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	934	Open in IMG/M
3300031682\|Ga0318560_10129001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300031708\|Ga0310686_101666948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300031724\|Ga0318500_10216929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300031744\|Ga0306918_11314803	Not Available	556	Open in IMG/M
3300031747\|Ga0318502_10030369	Not Available	2722	Open in IMG/M
3300031747\|Ga0318502_10049118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2215	Open in IMG/M
3300031747\|Ga0318502_10160927	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300031770\|Ga0318521_10999334	Not Available	513	Open in IMG/M
3300031779\|Ga0318566_10562899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300031821\|Ga0318567_10143624	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1317	Open in IMG/M
3300031845\|Ga0318511_10086538	Not Available	1316	Open in IMG/M
3300031896\|Ga0318551_10632434	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300031910\|Ga0306923_11281778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	778	Open in IMG/M
3300031912\|Ga0306921_11427930	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300031941\|Ga0310912_11039210	Not Available	627	Open in IMG/M
3300031942\|Ga0310916_10446932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1101	Open in IMG/M
3300031946\|Ga0310910_10474987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	992	Open in IMG/M
3300031947\|Ga0310909_10561767	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300031954\|Ga0306926_11483614	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300032001\|Ga0306922_12340689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300032052\|Ga0318506_10347506	Not Available	658	Open in IMG/M
3300032059\|Ga0318533_10248855	Not Available	1282	Open in IMG/M
3300032059\|Ga0318533_10303830	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300032059\|Ga0318533_11065562	Not Available	592	Open in IMG/M
3300032063\|Ga0318504_10361285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	690	Open in IMG/M
3300032068\|Ga0318553_10137259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1262	Open in IMG/M
3300032068\|Ga0318553_10243886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	938	Open in IMG/M
3300032076\|Ga0306924_11102919	Not Available	865	Open in IMG/M
3300032076\|Ga0306924_11894011	Not Available	618	Open in IMG/M
3300032091\|Ga0318577_10143629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1134	Open in IMG/M
3300032180\|Ga0307471_103859924	Not Available	530	Open in IMG/M
3300032261\|Ga0306920_100421519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1984	Open in IMG/M
3300032261\|Ga0306920_101006094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1214	Open in IMG/M
3300032261\|Ga0306920_101587189	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300032261\|Ga0306920_104136004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300032892\|Ga0335081_10615918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1336	Open in IMG/M
3300033289\|Ga0310914_10026084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4601	Open in IMG/M
3300033289\|Ga0310914_11150932	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.29%
Host-Associated	Host-Associated	9.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.44%
Plants	Host-Associated → Plants	9.71%
Aquatic	Environmental → Aquatic	4.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.83%
Freshwater	Environmental → Aquatic → Freshwater	3.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Sediment	Environmental → Aquatic → Sediment	0.97%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.67%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.60%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.16%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.97%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027174	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF040 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1005043231	3300002245	Forest Soil	HMLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS*
JGI26346J50198_10357671	3300003351	Bog Forest Soil	NTEEDAFNMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS*
Ga0062590_1026063391	3300004157	Soil	LQIENTEADAFAMLGIAIADAIAHDEAHTAALFEVWSELEEQRKLP*
Ga0066684_107350631	3300005179	Soil	DYIAEALGVLQIDNTEDDAFHMLGSAIADAVADDEEHSTSLFEVWSELEEQRKLS*
Ga0070666_104992812	3300005335	Switchgrass Rhizosphere	LQIVSTEEDAFAMLGSAIADAVADDEAHTAAMFEVWSELEEQRKLQ*
Ga0066903_1071406501	3300005764	Tropical Forest Soil	ELISDYIAEALGVLQTDSTEDDAFNMLGSAIIDAVADDPTRTEALLEVWSELEEQRKLQ*
Ga0066903_1075087931	3300005764	Tropical Forest Soil	LITDYITEALGVLQIDNTEEDAFHMLGSAIADAVADDEARTACLLDVWSELEEQRKLA*
Ga0066903_1088343442	3300005764	Tropical Forest Soil	QIDNTEDDAFHMLGSAIIDAVADDEEHTAGLLEVWSELEEQRKLP*
Ga0066660_103428673	3300006800	Soil	MLGSAIVDAVADDPAHTAALFEVLEELVEQRKRS*
Ga0126374_104971811	3300009792	Tropical Forest Soil	TDSTEEDAFNMLGSAIIDTVADDPTHTEALLEVWSEFEEQRKLQ*
Ga0126374_115750102	3300009792	Tropical Forest Soil	ELISDYIAEALGALQIDNTEDDAFHMLGSAIADAVADDEEHSTGLFEVWSELEEQRKLT*
Ga0126384_103761631	3300010046	Tropical Forest Soil	MLGSAIADAVADDEAHTACLLDVWSELEEQRKLG*
Ga0126373_109115011	3300010048	Tropical Forest Soil	ASTDPELISDYIAEALGVLQTDSTEDDAFNMLGSAIIDAVADDPTHTEALLEVWSELEEQRKLQ*
Ga0126376_129398631	3300010359	Tropical Forest Soil	DYITEALGVLQIDNTEEDAFHMLGSAIADAVADDEAHTAGLLEVWQELEEQRKLA*
Ga0126376_130214791	3300010359	Tropical Forest Soil	AEALGVLQIDNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG*
Ga0126378_115998662	3300010361	Tropical Forest Soil	LQIDNTEDDAFHMLGSAIIDAVADDEEHTAGLLEVWSELEEQRKLP*
Ga0126378_127100102	3300010361	Tropical Forest Soil	LLQIDNTEEDAFHMLGSAIIDAVADDEAHTAALLEVWTELDEQRKLA*
Ga0126381_1002866901	3300010376	Tropical Forest Soil	KATADQELIADYITEALGILQIDNSEEDAFHMLGSAIADAVAEDEAHTAGLFEVWSELEEQWKLA*
Ga0126381_1007332483	3300010376	Tropical Forest Soil	DAFAMLGSAIADAAADDPAHTAGLLEVWSELEEQRKLG*
Ga0126381_1009659761	3300010376	Tropical Forest Soil	AFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG*
Ga0126381_1014175702	3300010376	Tropical Forest Soil	TEALGVLQIDNTEEDAFHMLGSAIVDAVADDEAHTAGLLEVWSELEEQRKLA*
Ga0126381_1042257891	3300010376	Tropical Forest Soil	DAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLA*
Ga0126381_1044865182	3300010376	Tropical Forest Soil	NMLGSAIIDAVADDPTHTEALLEVWSELEEQRKLQ*
Ga0137392_109433711	3300011269	Vadose Zone Soil	LQIDNTEDDAFHMLGSAIIDAVADDEERSASLFEVWTELEEQRKLS*
Ga0137391_100882061	3300011270	Vadose Zone Soil	LQIDNTEDDAFQMLGSAIVDAVADDEERSASLFEVWTELEEQRKLS*
Ga0137399_100791596	3300012203	Vadose Zone Soil	LQIDNTEDDAFHMLGSAIVDAVANDEEHSASLFEVWTELEEQRKLS*
Ga0137362_100277736	3300012205	Vadose Zone Soil	MLGSAIVDAVANDEEHSASLFEVWTELEEQRKLS*
Ga0137362_101528994	3300012205	Vadose Zone Soil	MPGTQLISDYIAEALGVLQIDNTEHDAFHMLGSAIIDAVADDEEHSASLFEVWTELEEQRKLS*
Ga0137387_112879021	3300012349	Vadose Zone Soil	MLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS*
Ga0137358_110075052	3300012582	Vadose Zone Soil	DYIAEALGVLQIDNTEDDAFHMLGSAIADAVADDEEHSACLFEVWTELEEQRKLS*
Ga0157283_100960111	3300012907	Soil	NMLGGAIVDAVADDTAHTAVLFEVWSGLEEQRKLP*
Ga0137396_100730501	3300012918	Vadose Zone Soil	AFHMLGSAIVDAVANDEEHSASLFEVWTELEEQRKLS*
Ga0126369_125686851	3300012971	Tropical Forest Soil	DEELITDYIAEALGVLQIDNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG*
Ga0126369_134904782	3300012971	Tropical Forest Soil	KATTDQELISDYIAEALGVLQIDNTEDDAFQMLGSAIVDAVADDEEHSASLLEVWTELEEQRKLS*
Ga0157378_123133591	3300013297	Miscanthus Rhizosphere	NMLGSAIADAVADDEAHTAVLFEVWSELEEQRKLQ*
Ga0163162_114273112	3300013306	Switchgrass Rhizosphere	LQIENTEADAFAMLGIAIADAIAHDEAHTAALFEVWSELEEQRKL
Ga0157375_128861772	3300013308	Miscanthus Rhizosphere	LQIVSTEEDAFAMLGSAIADAVADDEAHTAAMFEVWSELEEQRKL
Ga0181532_107578731	3300014164	Bog	LGVLQMDNTEDDAFAMLGGAIADAVADDEARTAALFEVWSELEEQRKLA*
Ga0163163_122742151	3300014325	Switchgrass Rhizosphere	KATTDQELITEYVAEALGVLQIVSTEEDAFAMLGSAIADAVADDEAHTAAMFEVWSELEEQRKLQ*
Ga0137403_102865863	3300015264	Vadose Zone Soil	QELINDYIAEALGVLQIDNTEDDAFHMLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS
Ga0132258_126524403	3300015371	Arabidopsis Rhizosphere	LQIENTEADAFAMLGSAIADAIAHDEAHTAALFEVWSELEEQRKLP*
Ga0132255_1048319162	3300015374	Arabidopsis Rhizosphere	LQIENTEADAFAMLGSAIADAIAHDEAHTAALFEVWSELEEQRKL
Ga0187819_107400281	3300017943	Freshwater Sediment	ELISDYIAEALADLQIDNTEDDAFHMLSSAIVDAVADDQAHTAALFEVWSDLQEQRKLA
Ga0184628_102426631	3300018083	Groundwater Sediment	TIDQELISDYIAETLAVLQIENTEEDAFNMLGGAIVDAVAHDAAHTAVLFEVWSELEEQRKLP
Ga0210403_105725352	3300020580	Soil	EDDAFHMLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS
Ga0210403_106004651	3300020580	Soil	KDDAFHMLGSAIVDAVADEEEHSASLFEVWTELEEQRKLS
Ga0210406_105596191	3300021168	Soil	LISDYIAEALGVLQIDNTEDDAFHMLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS
Ga0210406_106257023	3300021168	Soil	EYIAETLGVLQTDNTEEDAFNMLGSAIVDAVADDPARTEALFQVWSELEEQRKLRRPIGTRREV
Ga0210393_105519773	3300021401	Soil	DQELISDYIAEALGVLQIDNTEDDAFHMLGSAIVDAVADDEEHSASLFEVWTELEEQRKL
Ga0210410_107735393	3300021479	Soil	EYIVETLGVLQTDNTEEDAFNMLGSAIVDAVADDPARTEALFEVWSELEEQRKLS
Ga0242655_103211651	3300022532	Soil	LQIDNTEDDAFHMLGSAIVDAVADDEDHSASLFEVWTELEEQRKLS
Ga0207710_101179244	3300025900	Switchgrass Rhizosphere	STEEDAFAMLGSAIADAVADDEAHTAAMFEVWSELEEQRKLQ
Ga0207680_104389232	3300025903	Switchgrass Rhizosphere	LQIVSTEEDAFAMLGSAIADAVADDEAHTAAMFEVWSELEEQRKLQ
Ga0207651_121137881	3300025960	Switchgrass Rhizosphere	LAVLQIENTEADAFAMLGIAIADAIAHDEAHTAALFEVWSELEEQRKLP
Ga0179587_105222372	3300026557	Vadose Zone Soil	NDYIAEALGVLQIDNTEDDAFHMLGSAIVDAVADDEEHSASLFEVWTELEEQRKLS
Ga0207948_10304221	3300027174	Forest Soil	AFNMLGSAIVDAVADDPARTEALFQVWSELEEQRKLS
Ga0209622_10134293	3300027502	Forest Soil	EALGVLQIDNTEDDAFHMLGSAIVDAVADDDEHSVSLFEVWTELEEQRKLS
Ga0209656_104447602	3300027812	Bog Forest Soil	AAALGVLQTDSTEDDAFNMLGSAIIDAVADDPAHTEALLEVWSELEEQRKLQ
Ga0209580_105246472	3300027842	Surface Soil	YISEALGDLQIDSTEDDAFNMLGSAIVDAVADDPSHTEVLFEVWSELEEQRKLP
Ga0308309_100201867	3300028906	Soil	LQTDNTEEDAFNMLGSAIVEAVADDPARTEALFEVWSELEEQRKLS
Ga0222749_101767963	3300029636	Soil	MLGTQLIGEYIAETLGVLQTDNTEEDAFNMLGSAIVDAVADDPARTEALFEVWSELEEQRKLS
Ga0170824_1205484873	3300031231	Forest Soil	EDDAFNMLGSAIIDAVADDPTHTEALLEVWSEIKEQRKLQ
Ga0170818_1134055073	3300031474	Forest Soil	DAFHMLGSAIVDATADDEEHSACLFEVWTELEEQRKLS
Ga0310915_102227091	3300031573	Soil	FHMLGSAIIDAIADDEEHTAGLFEVWSELEEQRKLS
Ga0318555_102619701	3300031640	Soil	SEALGVLQIDNSEDDAFNMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0318560_101290011	3300031682	Soil	QQIDNTEEDAFHMLGSAIADAVADDEPHTAGLLEVWSELEEQRKLT
Ga0310686_1016669482	3300031708	Soil	MQIDNTEEDAFNMLGSAIIDAAADDPSHTTALFEVWSELEEQPKLS
Ga0318500_102169293	3300031724	Soil	DYISEALGVLQIDNSEDDAFNMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0306918_113148032	3300031744	Soil	ITEAFGVLQIENTEEDALHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLA
Ga0318502_100303692	3300031747	Soil	TEEDAFQMLGSAIAAAVADDEVHTACLLDVWSELEEQRKLG
Ga0318502_100491183	3300031747	Soil	LQIDNSEDDAFNMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0318502_101609271	3300031747	Soil	LQIDNTEDDAFHMLGSAIIDAVADDEEHTAGLFEVWSELEEQRKLS
Ga0318521_109993341	3300031770	Soil	ASTDPELISDYIAEALGVLQTESTEDDAFNMLGSAIIDAVADDPTHTEALLEVWSELGEQRKLQ
Ga0318566_105628992	3300031779	Soil	TEEDAFNMLGSAILDAVADDTAHPATLFEVWSELEEQRKLQ
Ga0318567_101436241	3300031821	Soil	IDNTEDDAFNMLGGAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0318511_100865382	3300031845	Soil	LGVLQIDNTEEDAFQMLGSAIAAAVADDEVHTACLLDVWSELEEQRKLG
Ga0318551_106324341	3300031896	Soil	ADYITEALGILQIDNTEEDAFHMLGSAVADAVADDEAHTAGLLEVWSELEEQRKLV
Ga0306923_112817781	3300031910	Soil	LITDYITEALGVLQIDNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG
Ga0306921_114279303	3300031912	Soil	AFNMLGSAIIDAVADDPTHTEALLEVWSELEGQRKLQ
Ga0310912_110392101	3300031941	Soil	DNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELAEQRKLG
Ga0310916_104469321	3300031942	Soil	NTEDDAFNMLGGAIVDAVADDEAHTASLFEVWTELEEQRNLS
Ga0310910_104749871	3300031946	Soil	EEEAFHMLGSAIADAVADDEAHTAGLLEVWSELEEQRKLA
Ga0310909_105617671	3300031947	Soil	EEDAFHMLGSAVADAVADDEAHTAGLLEVWSELEEQRKLV
Ga0306926_114836142	3300031954	Soil	ITEALGVLKIDNTEEDAFHMLGSAIVDAVADDEAHTAGLLEVWSELEEQRKLA
Ga0306922_123406892	3300032001	Soil	YITEALGVLQIESTEEDAFHMLGSAIADAAADDAAHTAGLLEVWQDLEEQRKLG
Ga0318506_103475061	3300032052	Soil	GVLQIDNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG
Ga0318533_102488555	3300032059	Soil	DDAFHMLGSAIIDAVADDEEHTAGLFEVWSELEEQRKLS
Ga0318533_103038304	3300032059	Soil	SKATTDEELITDYITEALGVLQIDNTEEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG
Ga0318533_110655621	3300032059	Soil	TKEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG
Ga0318504_103612851	3300032063	Soil	SDYIAEALGVLQTESTEDDAFNMLGSAIIDAVADDPTHTEALLEVWSELGEQRKLQ
Ga0318553_101372592	3300032068	Soil	DYIAEALGVLQIDNTEDDAFNMLGGAIVDAVADDEAHTASLFEVWTELEEQRNLS
Ga0318553_102438863	3300032068	Soil	NMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0306924_111029191	3300032076	Soil	EEDALHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLA
Ga0306924_118940111	3300032076	Soil	GVLQIDNTKEDAFHMLGSAIADAVADDEAHTACLLDVWSELEEQRKLG
Ga0318577_101436291	3300032091	Soil	DPELISDYIAEALGVLQTESTEDDAFNMLGSAIIDAVADDPTHTEALLEVWSELGEQRKL
Ga0307471_1038599242	3300032180	Hardwood Forest Soil	TEDDAFNMLGSAIVDAVADDEAHTAGLLEVWTELEEQRKLS
Ga0306920_1004215193	3300032261	Soil	QELIADYLTEALGILQIDNTEEDAFHMLGSAIADAVADDEAHTAGLLEVWSELEEQRKLA
Ga0306920_1010060942	3300032261	Soil	LQTDGTEDDAFNMLGSAIIDAVADDPTHTEALLEVWSESEEQRKLQ
Ga0306920_1015871891	3300032261	Soil	AFHMLGSAIVDAVADDEVRTAGLLEVWSELEEQRKLA
Ga0306920_1041360041	3300032261	Soil	DVIADYISEALGVLQTENTEEDAFNMLGNAIIDAVADDPGRTEALFEVWSELEEQRKLQ
Ga0335081_106159181	3300032892	Soil	LADLQIDNTEEDAFNMIGSAIIDAVADDPAHTEALFEVWSELEEQRKLQ
Ga0310914_100260847	3300033289	Soil	IGDYISEALGVLQIDNSEDDAFNMLGSAIVDAVADDEAHTASLFEVWTELEEQRKLS
Ga0310914_111509322	3300033289	Soil	LKIDNTEEDAFHMLGSAIVDAVADDEAHTAGLLEVWSELEEQRKLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F098966

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences