Metagenome / Metatranscriptome Family F099014

Basic Information
Family ID	F099014
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	49 residues
Representative Sequence	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERR
Number of Associated Samples	85
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	92.86 %
% of genes near scaffold ends (potentially truncated)	12.62 %
% of genes from short scaffolds (< 2000 bps)	10.68 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (87.379 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (42.718 % of family members)
Environment Ontology (ENVO)	Unclassified (44.660 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.631 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 85.42% β-sheet: 0.00% Coil/Unstructured: 14.58%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12728	HTH_17	6.80
PF01850	PIN	2.91
PF01381	HTH_3	1.94
PF01904	DUF72	1.94
PF03683	UPF0175	1.94
PF00072	Response_reg	0.97
PF08401	ArdcN	0.97
PF02604	PhdYeFM_antitox	0.97
PF00903	Glyoxalase	0.97
PF13646	HEAT_2	0.97
PF13784	Fic_N	0.97
PF02661	Fic	0.97
PF01978	TrmB	0.97
PF04679	DNA_ligase_A_C	0.97
PF00069	Pkinase	0.97
PF08240	ADH_N	0.97
PF07690	MFS_1	0.97
PF12844	HTH_19	0.97
PF13188	PAS_8	0.97
PF13411	MerR_1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.88
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	1.94
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	1.94
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.97
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.97
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.97
COG4227	Antirestriction protein ArdC	Replication, recombination and repair [L]	0.97

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
All Organisms	root	All Organisms	12.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
cellular organisms	root	All Organisms → cellular organisms	12.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	9.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.38 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	9.71 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005166\|Ga0066674_10262487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300005436\|Ga0070713_100546087	Not Available	1097	Open in IMG/M
3300009088\|Ga0099830_10674225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	850	Open in IMG/M
3300009137\|Ga0066709_101929189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	821	Open in IMG/M
3300010047\|Ga0126382_10703330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300012202\|Ga0137363_11224822	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300012206\|Ga0137380_10063711	All Organisms → cellular organisms → Bacteria → Acidobacteria	3373	Open in IMG/M
3300012582\|Ga0137358_10010865	All Organisms → cellular organisms → Bacteria	5665	Open in IMG/M
3300012925\|Ga0137419_10101188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1996	Open in IMG/M
3300012929\|Ga0137404_12025487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300021420\|Ga0210394_10004818	All Organisms → cellular organisms → Bacteria	15484	Open in IMG/M
3300021420\|Ga0210394_10638156	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300026514\|Ga0257168_1041873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	995	Open in IMG/M
3300027528\|Ga0208985_1096512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.15%
Aquatic	Environmental → Aquatic	3.88%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.15%
Freshwater	Environmental → Aquatic → Freshwater	3.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.44%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.85%
Loam	Environmental → Terrestrial → Soil → Loam	4.85%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.51%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.62%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	42.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062389_1029995061	3300004092	Bog Forest Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSMAGLER
Ga0066674_102624872	3300005166	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMINLQFMLEMRK
Ga0066388_1050369251	3300005332	Tropical Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSIINLQFML
Ga0070713_1005460874	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEKAHLYEALYLVNHGIDEAVRGVQRLKKTPKLFMETYHKSMAGLERRRSIINLQFMLEM
Ga0070699_1017285751	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRS
Ga0066697_101888774	3300005540	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRS
Ga0066693_104634751	3300005566	Soil	MEKAHLYDALYLVNHGIDGAVRGVQRLKKSPKLFME
Ga0066691_102754511	3300005586	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHK
Ga0066652_1020348521	3300006046	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFME
Ga0066665_102022506	3300006796	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSI
Ga0066659_112035582	3300006797	Soil	VVKAHLYEALYLVNHGIDEAVRGVQRLKKSPQLFMEAYHKSMAGLERR
Ga0075424_1022972781	3300006904	Populus Rhizosphere	MQPTGSADFLVNHGIDEPFRGVQRLEKSPRLFMEAYHKSMGGLERRRSIINLQFMLEMRKLE
Ga0079219_103428661	3300006954	Agricultural Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRLGVQGQLNH
Ga0099793_105824662	3300007258	Vadose Zone Soil	MVMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAG
Ga0099830_106742251	3300009088	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRAIINLQFML
Ga0099830_111616891	3300009088	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFML
Ga0099828_103230731	3300009089	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAY
Ga0099828_105387703	3300009089	Vadose Zone Soil	MQKAHLYEALCLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVAGLERRR
Ga0066709_1019291891	3300009137	Grasslands Soil	MLVMEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSM
Ga0126384_102602773	3300010046	Tropical Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSTAGLERR
Ga0126382_107033302	3300010047	Tropical Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSIINLQFMLEM
Ga0074044_104447431	3300010343	Bog Forest Soil	MKKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMEAYHKSMASLERRR
Ga0126378_111446232	3300010361	Tropical Forest Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAGLERRRAIINVQFML
Ga0136449_1034935912	3300010379	Peatlands Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAGL
Ga0137392_103585911	3300011269	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMINLQFMLEM
Ga0137392_113607321	3300011269	Vadose Zone Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVAGLERRRALI
Ga0137391_109230202	3300011270	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFM
Ga0137391_114362051	3300011270	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFM
Ga0137393_116648511	3300011271	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAG
Ga0137389_102065871	3300012096	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAIRGVQRLKKSPKLFMEAYHKSMAGLE
Ga0137388_101177261	3300012189	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRK
Ga0137388_103007842	3300012189	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIIN
Ga0137364_102222703	3300012198	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLE
Ga0137363_109515551	3300012202	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSIINLQ
Ga0137363_112248221	3300012202	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSTAGLERRRSMINLQFMLEMRK
Ga0137380_100637114	3300012206	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKS
Ga0137378_112637141	3300012210	Vadose Zone Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVAGLERR
Ga0137358_100108651	3300012582	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRAIINL
Ga0137398_100493855	3300012683	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMA
Ga0137398_110796071	3300012683	Vadose Zone Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVAGLERRRALINGQ
Ga0137397_100422331	3300012685	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAARGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRK
Ga0137397_111894331	3300012685	Vadose Zone Soil	MEKAHLYGALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSIAGLER
Ga0137396_108037441	3300012918	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMET*
Ga0137359_1000382113	3300012923	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAIRGVRRLKKSPKLFIESYH
Ga0137359_117464281	3300012923	Vadose Zone Soil	MEKAHLYEALYLVNRGIDEAVRGVQRLKKSPKLFMEAYHKSM
Ga0137413_103602551	3300012924	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQ
Ga0137419_101011881	3300012925	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMEAYHKSMAGLERRRSIINLQFMLEMRK
Ga0137416_115210952	3300012927	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMET
Ga0137404_120254871	3300012929	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSRINLQFMLEM
Ga0137407_104504013	3300012930	Vadose Zone Soil	MEKSHLYEALYLVNHGIDEAVRGVQRLKKSPKLFME
Ga0181536_101380521	3300014638	Bog	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPGMFMET
Ga0137405_12442811	3300015053	Vadose Zone Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYYK
Ga0137409_111635552	3300015245	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPQLFMETYHKSMAGLERRR
Ga0187817_103832343	3300017955	Freshwater Sediment	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLE
Ga0187816_104796462	3300017995	Freshwater Sediment	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYH
Ga0066655_104028821	3300018431	Grasslands Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERR
Ga0066669_107373321	3300018482	Grasslands Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSM
Ga0179592_101128841	3300020199	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKS
Ga0179592_104556041	3300020199	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMEA
Ga0210407_104217073	3300020579	Soil	MEKAHLYETLYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRS
Ga0210399_105485592	3300020581	Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYK
Ga0210405_1001712310	3300021171	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSMINLQF
Ga0210386_114851191	3300021406	Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVAGL
Ga0210394_1000481814	3300021420	Soil	MEKANLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAALERRRSMPPLRKQKRSKTF
Ga0210394_106381561	3300021420	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAGLERRRSIINLQFMLE
Ga0210410_102757491	3300021479	Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFR
Ga0210409_109591542	3300021559	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMIN
Ga0224561_10280041	3300023030	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRAII
Ga0179589_103596601	3300024288	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEA
Ga0209802_10727533	3300026328	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSRINL
Ga0209158_12611851	3300026333	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLER
Ga0257149_10272771	3300026355	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSIIN
Ga0257173_10431261	3300026360	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEMRKL
Ga0257171_10263252	3300026377	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAG
Ga0257172_10619443	3300026482	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAGLERRRAMIN
Ga0257172_10892761	3300026482	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHK
Ga0257153_10549782	3300026490	Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFRE
Ga0257153_10598601	3300026490	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETY
Ga0257168_10418731	3300026514	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLERRRSRINLQFML
Ga0209648_108123921	3300026551	Grasslands Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRAIIN
Ga0179587_101598914	3300026557	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRR
Ga0179587_102183883	3300026557	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMET
Ga0179587_102982493	3300026557	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSII
Ga0179587_103041103	3300026557	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERR
Ga0179587_109407281	3300026557	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSMI
Ga0208985_10965122	3300027528	Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVLRLKKSPKLFMEAYHKSMAGLERRRA
Ga0209588_10126505	3300027671	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINL
Ga0209178_10208351	3300027725	Agricultural Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLEM
Ga0209180_105938351	3300027846	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMA
Ga0209166_103776901	3300027857	Surface Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLERRRSRINLQ
Ga0209590_101538364	3300027882	Vadose Zone Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMEAYHKSMAGLERRRSIINLQFMLE
Ga0209006_100441911	3300027908	Forest Soil	MQKAHLYEALYLVNHGIDEAVRGVQRLKKAPHAFREVYYKSVA
Ga0222749_107232531	3300029636	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMVGLERRQSIINLQFMLEM
Ga0170834_1103322151	3300031057	Forest Soil	MEKAHLYEALFLVNHGIDEAVRGVQRLKKSPKLFMETYHKAMAGLER
Ga0307476_100506991	3300031715	Hardwood Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFMETYHKSMAGLERRRSRINLQFMLE
Ga0307469_106087443	3300031720	Hardwood Forest Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLERRR
Ga0310917_109009361	3300031833	Soil	MEKAHLYEALYLVNHGINEAVRGVQRLKKSPKLFMETYHKSMAGLERR
Ga0307479_104505783	3300031962	Hardwood Forest Soil	MEKAHLYEALFLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLE
Ga0311301_124706101	3300032160	Peatlands Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKCPKLFMETYHKSMAG
Ga0335085_103205163	3300032770	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFTEAYHKALSGLERRRSLIHLQFML
Ga0335085_105035941	3300032770	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMETYHKSMAGLERRRSRI
Ga0335071_121339311	3300032897	Soil	MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPKLFTEAYHKALSGLERRRS
Ga0335073_110190792	3300033134	Soil	MEKAHLYEALYLVDHGVDEAVRGIQRSKKSPKLFMETYHKSMAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099014

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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