NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099107

Metagenome / Metatranscriptome Family F099107

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099107
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 58 residues
Representative Sequence MEWIRRVFRSEIRESHVGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN
Number of Associated Samples 71
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 88.35 %
% of genes near scaffold ends (potentially truncated) 21.36 %
% of genes from short scaffolds (< 2000 bps) 65.05 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(27.184 % of family members)
Environment Ontology (ENVO) Unclassified
(39.806 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(84.466 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 65.52%    β-sheet: 0.00%    Coil/Unstructured: 34.48%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF04519Bactofilin 6.80
PF02698DUF218 5.83
PF13489Methyltransf_23 3.88
PF09335SNARE_assoc 1.94
PF13419HAD_2 1.94
PF12838Fer4_7 1.94
PF03738GSP_synth 0.97
PF13620CarboxypepD_reg 0.97
PF14437MafB19-deam 0.97
PF01734Patatin 0.97
PF01087GalP_UDP_transf 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG1664Cytoskeletal protein CcmA, bactofilin familyCytoskeleton [Z] 6.80
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 5.83
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 5.83
COG0398Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 familyFunction unknown [S] 1.94
COG0586Membrane integrity protein DedA, putative transporter, DedA/Tvp38 familyCell wall/membrane/envelope biogenesis [M] 1.94
COG1238Uncharacterized membrane protein YqaA, VTT domainFunction unknown [S] 1.94
COG0754Glutathionylspermidine synthase, CHAP domainAmino acid transport and metabolism [E] 0.97
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 0.97
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 0.97
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 0.97

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000597|AF_2010_repII_A1DRAFT_10128798All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300000655|AF_2010_repII_A100DRAFT_1038231All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300005167|Ga0066672_10070819All Organisms → cellular organisms → Bacteria2060Open in IMG/M
3300005167|Ga0066672_10101675All Organisms → cellular organisms → Bacteria1754Open in IMG/M
3300005167|Ga0066672_10244610All Organisms → cellular organisms → Bacteria1154Open in IMG/M
3300005171|Ga0066677_10000410All Organisms → cellular organisms → Bacteria → Acidobacteria14130Open in IMG/M
3300005171|Ga0066677_10210128All Organisms → cellular organisms → Bacteria → Acidobacteria1092Open in IMG/M
3300005176|Ga0066679_10527422All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium769Open in IMG/M
3300005179|Ga0066684_10063918All Organisms → cellular organisms → Bacteria2156Open in IMG/M
3300005184|Ga0066671_10005169All Organisms → cellular organisms → Bacteria → Acidobacteria4739Open in IMG/M
3300005332|Ga0066388_100717219All Organisms → cellular organisms → Bacteria1605Open in IMG/M
3300005332|Ga0066388_101506290All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300005332|Ga0066388_104277614All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300005332|Ga0066388_106884152All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300005447|Ga0066689_10001021All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia9382Open in IMG/M
3300005450|Ga0066682_10149755All Organisms → cellular organisms → Bacteria → Acidobacteria1485Open in IMG/M
3300005454|Ga0066687_10315860All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300005471|Ga0070698_101912105All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300005537|Ga0070730_10060873All Organisms → cellular organisms → Bacteria2690Open in IMG/M
3300005556|Ga0066707_10735019All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005561|Ga0066699_10051936All Organisms → cellular organisms → Bacteria2523Open in IMG/M
3300005561|Ga0066699_10074931All Organisms → cellular organisms → Bacteria2164Open in IMG/M
3300005587|Ga0066654_10007497All Organisms → cellular organisms → Bacteria3926Open in IMG/M
3300005764|Ga0066903_100240927All Organisms → cellular organisms → Bacteria2775Open in IMG/M
3300005764|Ga0066903_100242876All Organisms → cellular organisms → Bacteria2765Open in IMG/M
3300005764|Ga0066903_100680632All Organisms → cellular organisms → Bacteria1807Open in IMG/M
3300005764|Ga0066903_101206985All Organisms → cellular organisms → Bacteria1405Open in IMG/M
3300006755|Ga0079222_10008512All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3605Open in IMG/M
3300006791|Ga0066653_10102967All Organisms → cellular organisms → Bacteria → Acidobacteria1306Open in IMG/M
3300006800|Ga0066660_10252812All Organisms → cellular organisms → Bacteria → Acidobacteria1379Open in IMG/M
3300006804|Ga0079221_10000341All Organisms → cellular organisms → Bacteria12444Open in IMG/M
3300006804|Ga0079221_10286793All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300006806|Ga0079220_10100761All Organisms → cellular organisms → Bacteria1497Open in IMG/M
3300006854|Ga0075425_100032331All Organisms → cellular organisms → Bacteria → Proteobacteria5810Open in IMG/M
3300006954|Ga0079219_10306383All Organisms → cellular organisms → Bacteria → Acidobacteria988Open in IMG/M
3300009012|Ga0066710_101238803All Organisms → cellular organisms → Bacteria1156Open in IMG/M
3300009088|Ga0099830_11755158All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300009792|Ga0126374_10474065All Organisms → cellular organisms → Bacteria → Acidobacteria895Open in IMG/M
3300010043|Ga0126380_10613823All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300010047|Ga0126382_10980039All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300010048|Ga0126373_10041668All Organisms → cellular organisms → Bacteria → Acidobacteria4041Open in IMG/M
3300010048|Ga0126373_10418509All Organisms → cellular organisms → Bacteria1368Open in IMG/M
3300010048|Ga0126373_12416334All Organisms → cellular organisms → Bacteria585Open in IMG/M
3300010048|Ga0126373_13010011All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300010322|Ga0134084_10047754All Organisms → cellular organisms → Bacteria1252Open in IMG/M
3300010358|Ga0126370_10014731All Organisms → cellular organisms → Bacteria4328Open in IMG/M
3300010358|Ga0126370_10041960All Organisms → cellular organisms → Bacteria2849Open in IMG/M
3300010358|Ga0126370_10475132All Organisms → cellular organisms → Bacteria → Acidobacteria1049Open in IMG/M
3300010358|Ga0126370_10986543All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300010358|Ga0126370_11499101All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300010358|Ga0126370_12093295All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300010359|Ga0126376_10974354All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300010360|Ga0126372_11041845All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300010361|Ga0126378_10389832All Organisms → cellular organisms → Bacteria → Acidobacteria1505Open in IMG/M
3300010361|Ga0126378_10605613All Organisms → cellular organisms → Bacteria → Acidobacteria1210Open in IMG/M
3300010361|Ga0126378_10890377All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300010361|Ga0126378_11385105All Organisms → cellular organisms → Bacteria796Open in IMG/M
3300010376|Ga0126381_100171180All Organisms → cellular organisms → Bacteria2875Open in IMG/M
3300010398|Ga0126383_10008909All Organisms → cellular organisms → Bacteria7168Open in IMG/M
3300012209|Ga0137379_10007756All Organisms → cellular organisms → Bacteria10175Open in IMG/M
3300012285|Ga0137370_10983295All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300012401|Ga0134055_1184918All Organisms → cellular organisms → Bacteria → Acidobacteria513Open in IMG/M
3300012971|Ga0126369_11121782All Organisms → cellular organisms → Bacteria876Open in IMG/M
3300012971|Ga0126369_12023640All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300014150|Ga0134081_10153884All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300017959|Ga0187779_10024096All Organisms → cellular organisms → Bacteria → Acidobacteria3481Open in IMG/M
3300017959|Ga0187779_11086476All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300017961|Ga0187778_10000241All Organisms → cellular organisms → Bacteria40070Open in IMG/M
3300017972|Ga0187781_10084761All Organisms → cellular organisms → Bacteria2191Open in IMG/M
3300018086|Ga0187769_10016090All Organisms → cellular organisms → Bacteria4874Open in IMG/M
3300018431|Ga0066655_10214002All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300018431|Ga0066655_11143691All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300018433|Ga0066667_10001331All Organisms → cellular organisms → Bacteria → Acidobacteria9188Open in IMG/M
3300018433|Ga0066667_10008871All Organisms → cellular organisms → Bacteria4704Open in IMG/M
3300021476|Ga0187846_10016468All Organisms → cellular organisms → Bacteria3474Open in IMG/M
3300021476|Ga0187846_10230524All Organisms → cellular organisms → Bacteria → Acidobacteria772Open in IMG/M
3300021560|Ga0126371_10013878All Organisms → cellular organisms → Bacteria → Acidobacteria7329Open in IMG/M
3300021560|Ga0126371_10494919All Organisms → cellular organisms → Bacteria → Acidobacteria1370Open in IMG/M
3300021560|Ga0126371_11840098All Organisms → cellular organisms → Bacteria726Open in IMG/M
3300021560|Ga0126371_12622408All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300021560|Ga0126371_13580484All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300026277|Ga0209350_1000367All Organisms → cellular organisms → Bacteria → Acidobacteria27455Open in IMG/M
3300026309|Ga0209055_1110365All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300026310|Ga0209239_1286286All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300026312|Ga0209153_1001019All Organisms → cellular organisms → Bacteria10515Open in IMG/M
3300026314|Ga0209268_1157216All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300026315|Ga0209686_1157771All Organisms → cellular organisms → Bacteria → Acidobacteria679Open in IMG/M
3300026317|Ga0209154_1238951All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300026547|Ga0209156_10012573All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5414Open in IMG/M
3300027725|Ga0209178_1007825All Organisms → cellular organisms → Bacteria3364Open in IMG/M
3300027725|Ga0209178_1133810All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300027765|Ga0209073_10047343All Organisms → cellular organisms → Bacteria1399Open in IMG/M
3300027787|Ga0209074_10169180All Organisms → cellular organisms → Bacteria800Open in IMG/M
3300027857|Ga0209166_10012664All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5408Open in IMG/M
3300031545|Ga0318541_10003639All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6242Open in IMG/M
3300031546|Ga0318538_10214392All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300031564|Ga0318573_10599765All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300031572|Ga0318515_10447093All Organisms → cellular organisms → Bacteria691Open in IMG/M
3300031754|Ga0307475_10310952All Organisms → cellular organisms → Bacteria1265Open in IMG/M
3300031820|Ga0307473_11474104All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300031831|Ga0318564_10427854All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300032180|Ga0307471_100032034All Organisms → cellular organisms → Bacteria → Acidobacteria4068Open in IMG/M
3300032783|Ga0335079_10106787All Organisms → cellular organisms → Bacteria3168Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil27.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil19.42%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil8.74%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil7.77%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.85%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.91%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.91%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.91%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.91%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.94%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.94%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm1.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.97%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005184Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012401Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026547Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1012879813300000597Forest SoilMEWLRRVLRSEIHESHVGIALILCLLVMTAMSIALVWQAQIIANQRDAIRWLEHVKLGN*
AF_2010_repII_A100DRAFT_103823123300000655Forest SoilMEWLRRVLRSEIHESHVGIALILCLLVMSAMSIALVWQAQIIANQRDAIRWLEHVKLGN*
Ga0066672_1007081933300005167SoilMERIRRAFRSEVRESHLGIALIFCLILMSAMSIALLWQAQIIANQRDAIRWLEQLKGN*
Ga0066672_1010167523300005167SoilMGWIRRVFRSEIRESHVGLALIFCLLIMSVMSIALLWQAQIIANQRDTIRLLEQLKVGN*
Ga0066672_1024461013300005167SoilMEWIRRVFRSEIRESHVALALIFCLVILSAMSVALVWQAQIIANQREAIRWLEQLKAGN*
Ga0066677_1000041083300005171SoilMEWIRRMLRSEIRESHVGFALILCLLVMSAMSIALVWQAQIIANQRDAIRWLERVKLGN*
Ga0066677_1021012813300005171SoilMEWIRRVFRSEIRESHVALALIFCLVIMSAMSVALVWQAQIIANQREAIRWLEQLKAGN*
Ga0066679_1052742213300005176SoilMERIRRAFRSEVRESHLGIALIFCLILMSAMSIALLWQAQIIANQRDAIRWLEQLKMGN*
Ga0066684_1006391843300005179SoilMEWIRRVFRSEIRESHVAVALIFCLVIMSAMSVALVWQAQIIANQREAIRWLEQLKAGN*
Ga0066671_1000516963300005184SoilMEWIRRVFRSEIRESHVGLALIFSLLIMSLMSIALVWQAQIIANQRDTIRLLEQLKVGN*
Ga0066388_10071721923300005332Tropical Forest SoilMEWIRRVFRSEIRESHIGVALILCLLIMSMMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0066388_10150629013300005332Tropical Forest SoilMEWLRRVLRSEIHESHVGIALVVCLLLMSAMSIALVWQAQIIANQRDAIRWLEHVKAGN*
Ga0066388_10427761423300005332Tropical Forest SoilMEQIRRFFRIQIRESHLGVALIFCLLAMSAMSIALVWQAEIIANQREAIRWLEHMRFGG*
Ga0066388_10688415213300005332Tropical Forest SoilMDWIRRAFRIDIRESHLGTALIFCLLAMGVMSMAIVWQAQIIANQREAIRWLEQLKFGG*
Ga0066689_10001021103300005447SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQ
Ga0066682_1014975523300005450SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQLKLGN*
Ga0066687_1031586013300005454SoilAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRRLEQLKLGN*
Ga0070698_10191210513300005471Corn, Switchgrass And Miscanthus RhizosphereMEWIRRVFRSEIRESHIGVTLIFCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKA
Ga0070730_1006087333300005537Surface SoilMEWIRRVFRSEIRESHIGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0066707_1073501913300005556SoilMERIRRVLRSEIHESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIRWLEQVKLGN*
Ga0066699_1005193633300005561SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQVKLGN*
Ga0066699_1007493133300005561SoilMGWIRRVFRSEIRESHVGLALIFCLLIMSVMSIALLWQAQIIANQRDTI
Ga0066654_1000749713300005587SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQLKLG
Ga0066903_10024092753300005764Tropical Forest SoilMEWMRRVFRSEIRESNVGVALIVCLIVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0066903_10024287633300005764Tropical Forest SoilMEWIRRVFRSEIRESHLGVALIVCLMVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0066903_10068063213300005764Tropical Forest SoilMEWIRRVFRSEIRESHIGVALILCLIIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0066903_10120698513300005764Tropical Forest SoilMEWIRRAFRIDIRESHLGTALVFCLIAMSVMSIAIVWQAQIIANQREAIRWLEQLKFGG*
Ga0079222_1000851263300006755Agricultural SoilMEWIRRVFRSEIRESHVGIALILCLLIMSAMSVALVWQAQVIANQRDTIRWLEQLKAGN*
Ga0066653_1010296723300006791SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIGLLWQAQIIANQRDAIRWLEQLKLGN*
Ga0066660_1025281223300006800SoilMEWIRRVFRSEIRESHVALALIFCLVILSAMSVALVWQAQIIANQREAIQWLVRLKFGG*
Ga0079221_1000034193300006804Agricultural SoilMEWIRRVFRSEIRESHVGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0079221_1028679323300006804Agricultural SoilMEWIRRNLRVQIRESYVGTALIFCLLVMSIMSIALVWQAQIIANQRESIRWLEQIKFGG*
Ga0079220_1010076133300006806Agricultural SoilRVQIRESYVGTALIFCLLVMSIMSIALVWQAQIIANQRESIRWLEQIKFGG*
Ga0075425_10003233183300006854Populus RhizosphereMEWIRRVFRSEIRESHIGVTLIFCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0079219_1030638323300006954Agricultural SoilMEWIRRVFRSEIRESHVGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKA
Ga0066710_10123880323300009012Grasslands SoilMEWIRRMLRCEIRESHVAFALILCLLVMSAMSIALVWQAQIIANQRDAIRWLERVKLGN
Ga0099830_1175515813300009088Vadose Zone SoilMEWIRRVFRSEIRESHVGLALIFCLLIMGVMSIALVWQAQIIANQRDAIRWLEQLKFGN*
Ga0126374_1047406513300009792Tropical Forest SoilMEWLRRVLRSEIHESHVGIALIVCLLLMSAMSIALVWQAQIIANQRDAIRWLEHVKAGN*
Ga0126380_1061382313300010043Tropical Forest SoilMEQIRRFLRIQIRESYVGVALIFCLLAMSVMSVALVWQAQIIANQRESIRWLEQVKFGG*
Ga0126382_1098003923300010047Tropical Forest SoilPTMEWIRRVFRSEIRESYVGLALIFCLIIMSVMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0126373_1004166823300010048Tropical Forest SoilMEWLRRVLRSEIHESHVGIALIVCLLLMSAMSIALVWQAQIIANQRDAIRWLEHLKDGN*
Ga0126373_1041850913300010048Tropical Forest SoilMDWIRRAFRIDTRESHLGTALIFCLLAMGVMSMAIVWQAQIIANQREAIRWLEQLKFGG*
Ga0126373_1241633423300010048Tropical Forest SoilMEWIRRVFRSEIRESHLGVALIVCLIVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0126373_1301001123300010048Tropical Forest SoilMEWIRRVFRSEIRESHIGVALIVCLIIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0134084_1004775413300010322Grasslands SoilEIRESHVALALIFCLVIMSAMSVALVWQAQIIANQREAIRWLEQLKAGN*
Ga0126370_1001473133300010358Tropical Forest SoilMEQIRRVLRIQIRESHLGVALIFCLLAMSAMSIALVWQAQIIANQREAIRWLEQAKFGG*
Ga0126370_1004196013300010358Tropical Forest SoilMQQIRRFLRIQIRESHLGLALIFCLLAMSAMSIALVWQAQIIANQRESIRWLEQVKFGG*
Ga0126370_1047513223300010358Tropical Forest SoilMEWIRRVFRSEIRESNIGVALIVCLIIMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0126370_1098654313300010358Tropical Forest SoilMEWIRRVFRSEIRESHIGVALIVCLIIMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0126370_1149910113300010358Tropical Forest SoilTMEWIRRVFRSEIRESHLGVALILCLMVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN
Ga0126370_1209329513300010358Tropical Forest SoilMEWIRRAFRSEIRESHLGVALIFCLMVMSAMSIALIWQAQIIANQRDAIRW
Ga0126376_1097435413300010359Tropical Forest SoilMEQIRRALRIQIRESHLGVALIVCLLAMSAMSIALVWQAQIIANQREAIRWLEQMKFGG*
Ga0126372_1104184513300010360Tropical Forest SoilMEWLRRVLRSEIHESHVGIALILCLLAMSAMSIALVWQAQIIANQRDAIRWLEHVKLGN*
Ga0126378_1038983213300010361Tropical Forest SoilMEWLRRVLRSEIHESHVGIALILCLLDMSAMSIALVWQAQIIANQRDAIRWLEHVKLGN*
Ga0126378_1060561313300010361Tropical Forest SoilMPSIRRILRSEIRESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIRWLEQLKLRN*
Ga0126378_1089037723300010361Tropical Forest SoilMEQIRRFFRIQIRESHLGVALIFCLLAMSAMSIALVWQAGIIANQREAI
Ga0126378_1138510513300010361Tropical Forest SoilMPWIRRILRSEIRESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIRWLEQVKLRN*
Ga0126381_10017118033300010376Tropical Forest SoilMEWLRCVLRSEIHESHVGIALIVCLLLMSAMSIALVWQAQIIANQREAIRWLEHLKDGN*
Ga0126383_1000890913300010398Tropical Forest SoilPTMEWIRRVFRSEIRESHLGVALIVCLMVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0137379_1000775613300012209Vadose Zone SoilMEWIRRVFRSEIRESHVGVTLIFCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN*
Ga0137370_1098329513300012285Vadose Zone SoilMEWIRRAFRSEIHESHVGIALILCLLFMSAMSIALLWQAQIIANQRDAIRWLEQLKLGN*
Ga0134055_118491823300012401Grasslands SoilRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQVKLGN*
Ga0126369_1112178223300012971Tropical Forest SoilMEWLRRVLWSKIHESHVGIALIVCLLLMSAMSIALVWQAQIIANQRDAIRWLEHLKDGN*
Ga0126369_1202364013300012971Tropical Forest SoilMEQIRRALRIQIRESHLGVALIFCLLAMSAMSIALVWQAQIIANQREAIHWLEQVKFGG*
Ga0134081_1015388423300014150Grasslands SoilMEWIRRMLRSEIRESHVGFALILCLLVMSAMSIALVWQAQIIANQRDAIRWLERV
Ga0187779_1002409623300017959Tropical PeatlandMEWIRRAFRIPASESHVGFMLVLCLLIMSAMSVALVWQAEIIASQREAIRWLEQLKLGG
Ga0187779_1108647613300017959Tropical PeatlandMEWIRRALRVQIRESHLGVVLILCLLTMSAMSIALVWQAQIIASQREAIRWLEQLKLGG
Ga0187778_10000241353300017961Tropical PeatlandMEWIRRAFRVPASESHVGFVLAISLFIMSAMSVALIWQAQIIADQREAIRWLEHMKLGS
Ga0187781_1008476123300017972Tropical PeatlandMEWIRRAFRVPASESHVGFVLAISLLIMSAMSVALIWQAQIIADQREAIRWLEHLKLGS
Ga0187769_1001609043300018086Tropical PeatlandMQWLRRALRIPASESQVGFALVLSLLVMCAMSIALIWQAEIIASQREAIRWLEHLKMGT
Ga0066655_1021400223300018431Grasslands SoilMEWIRRMLRSEIRESHVGFALILCLLVMSAMSIALVWQAQIIANQRDAIRWLERIKLGN
Ga0066655_1114369113300018431Grasslands SoilMEWIRRVFRSEIRESHVAVALIFCLVIMSAMSVALVWQAQIIANQREAIRWLEQLKAGN
Ga0066667_1000133123300018433Grasslands SoilMEWIRRMLRSEIRESHVGFALILCLLVMSAMSIALVWQAQIIANQRDAIRWLERVKLGN
Ga0066667_1000887113300018433Grasslands SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQLKLGN
Ga0187846_1001646813300021476BiofilmMEWIRRLLRIQASESHITLALVLCLLVMSVMSIALVWQAQIIANQRDAIRWLENLKLGG
Ga0187846_1023052413300021476BiofilmMEWIRRVCRIEIRESHLGVALIICLLLMSVMSIAIVWQAQVIANQRDAIRWLEQIKFGS
Ga0126371_1001387843300021560Tropical Forest SoilMEWLRRVLRSEIHESHVGIALVVCLLLMSAMSIALVWQAQIIANQRDAIRWLEHVKAGN
Ga0126371_1049491923300021560Tropical Forest SoilMEWIRRVFRSEIRESHLGVALIVCLMVMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN
Ga0126371_1184009813300021560Tropical Forest SoilMEWIRRVFRSEIRESNIGVALIVCLIIMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN
Ga0126371_1262240813300021560Tropical Forest SoilMEWIRRVFRSEIRESHLGVALILCLMIMSAMSIALVWQAQIIANQRDAIRWLEQLKAGN
Ga0126371_1358048413300021560Tropical Forest SoilMEWIRRVFRSEIRESHIGVALILCLIIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN
Ga0209350_1000367233300026277Grasslands SoilMEWIRRAFRSEIHESHVGIALILCLLVMAAMSIALLWQAQIIANQRDAIRWLEQVKLGN
Ga0209055_111036513300026309SoilMGWIRRVFRSEIRESHVGLALIFCLLIMSVMSIALLWQAQIIANQRDTIRLLEQLKVGN
Ga0209239_128628623300026310Grasslands SoilMEWIRRVFRSEIRESHVGLALIFSLLIMSLMSIALVWQAQIIANQRDTIRLLEQLKVGN
Ga0209153_100101943300026312SoilMERIRRAFRSEVRESHLGIALIFCLILMSAMSIALLWQAQIIANQRDAIRWLEQLKMGN
Ga0209268_115721613300026314SoilFRSEIRESHVALALIFCLVILSAMSVALVWQAQIIANQREAIRWLEQLKAGN
Ga0209686_115777113300026315SoilMEWIRRVFRSEIRESHVALALIFCLVIMSAMSVALVWQAQIIANQREAIRWLEQLKAGN
Ga0209154_123895113300026317SoilMERIRRAFRSEVRESHLGIALIFCLILMSAMSIALLWQAQIIANQRDAIRWLEQLKGN
Ga0209156_1001257383300026547SoilWIRRAFRSEIHESHVGIALILCLLVLAAMSIALLWQAQIIANQRDAIRWLEQLKLGN
Ga0209178_100782533300027725Agricultural SoilMEWIRRVFRSEIRESHVGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN
Ga0209178_113381023300027725Agricultural SoilMEWIRRNLRVQIRESYVGTALIFCLLVMSIMSIALVWQAQIIANQRESIRWLEQIKFGG
Ga0209073_1004734333300027765Agricultural SoilRVQIRESYVGTALIFCLLVMSIMSIALVWQAQIIANQRESIRWLEQIKFGG
Ga0209074_1016918013300027787Agricultural SoilMEWIRRVFRSEIRESHVGIALILCLLIMSAMSVALVWQAQVIANQRDTIRWLEQLKAGN
Ga0209166_1001266463300027857Surface SoilMEWIRRVFRSEIRESHIGVALILCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN
Ga0318541_1000363963300031545SoilMPSIRRILRSEIRESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIRWLEQVKLRN
Ga0318538_1021439223300031546SoilMPSIRRILRSEIRESHVGIALMLCLLVMAAMSIALVWQAQIIANQRDAIRWLEQVKLRN
Ga0318573_1059976513300031564SoilMPSIRRILRSEIRESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIRWLE
Ga0318515_1044709323300031572SoilMPSIRRILRSEIRESHVGIALMLCLLVMAAMSIALVWQAQIIANQRDAIRWLE
Ga0307475_1031095223300031754Hardwood Forest SoilMEWMRRVLRSEVHESHVGIALILCLLVMSAMSIALVWQAQIIANQRDAIRWLEHVKLGN
Ga0307473_1147410413300031820Hardwood Forest SoilMEWIRRVFRSEIRESHIGVTLIFCLLIMSAMSVALVWQAQIIANQRDAIRWLEQLKAGN
Ga0318564_1042785413300031831SoilMPSIRRILRSEIRESHVGIALILCLLVMAAMSIALVWQAQIIANQRDAIR
Ga0307471_10003203423300032180Hardwood Forest SoilMEWIRRVFRSEIRESHIGVALIFCLLIMSAMSVALAWQAQIISNQRDAIRWLEQLKAGN
Ga0335079_1010678743300032783SoilMDWIRRALRIPASESHVGFVLVLCLLIMSAMSIALVWQAEIIASQREAIRWLEQLKLGG

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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