Metagenome / Metatranscriptome Family F099271

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099271
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	48 residues
Representative Sequence	MSEPKETTPLDAMVAGLNMLYDAMENPPAPPADEDEETETKENRWIH
Number of Associated Samples	66
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.83 %
% of genes near scaffold ends (potentially truncated)	26.21 %
% of genes from short scaffolds (< 2000 bps)	91.26 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (72.816 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (33.010 % of family members)
Environment Ontology (ENVO)	Unclassified (70.874 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.029 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.94% β-sheet: 0.00% Coil/Unstructured: 51.06%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF08299	Bac_DnaA_C	14.56
PF01047	MarR	13.59
PF01520	Amidase_3	5.83
PF01555	N6_N4_Mtase	3.88
PF06508	QueC	0.97
PF07589	PEP-CTERM	0.97
PF00176	SNF2-rel_dom	0.97
PF03567	Sulfotransfer_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0593	Chromosomal replication initiation ATPase DnaA	Replication, recombination and repair [L]	14.56
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	5.83
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.88
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.88
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.88
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.97
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	0.97
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.97
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.97
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.97
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.97
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.97
COG0780	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily	Translation, ribosomal structure and biogenesis [J]	0.97
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
All Organisms	root	All Organisms	27.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Viruses	superkingdom	All Organisms → Viruses	25.24 %
cellular organisms	root	All Organisms → cellular organisms	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	7.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	7.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	7.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	6.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.97 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	72.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	16.50 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	6.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.94 %
Verrucomicrobia phage P8625	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	0.97 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10077587	Not Available	1490	Open in IMG/M
3300000115\|DelMOSum2011_c10050281	All Organisms → Viruses → Predicted Viral	1654	Open in IMG/M
3300000115\|DelMOSum2011_c10086128	All Organisms → Viruses → Predicted Viral	1073	Open in IMG/M
3300000115\|DelMOSum2011_c10092844	All Organisms → Viruses → Predicted Viral	1011	Open in IMG/M
3300000115\|DelMOSum2011_c10115645	Not Available	849	Open in IMG/M
3300001346\|JGI20151J14362_10097549	Not Available	1023	Open in IMG/M
3300005942\|Ga0070742_10023405	Not Available	1646	Open in IMG/M
3300006029\|Ga0075466_1049727	All Organisms → Viruses → Predicted Viral	1240	Open in IMG/M
3300006484\|Ga0070744_10234656	Not Available	520	Open in IMG/M
3300006803\|Ga0075467_10334806	Not Available	798	Open in IMG/M
3300006803\|Ga0075467_10695043	Not Available	518	Open in IMG/M
3300006803\|Ga0075467_10714966	Not Available	510	Open in IMG/M
3300006920\|Ga0070748_1101614	All Organisms → Viruses → Predicted Viral	1096	Open in IMG/M
3300006920\|Ga0070748_1129564	Not Available	947	Open in IMG/M
3300007229\|Ga0075468_10124938	Not Available	796	Open in IMG/M
3300007231\|Ga0075469_10048087	All Organisms → Viruses → Predicted Viral	1293	Open in IMG/M
3300007231\|Ga0075469_10056711	All Organisms → Viruses → Predicted Viral	1162	Open in IMG/M
3300007231\|Ga0075469_10196060	Not Available	541	Open in IMG/M
3300007276\|Ga0070747_1040397	All Organisms → Viruses → Predicted Viral	1816	Open in IMG/M
3300007276\|Ga0070747_1053480	Not Available	1544	Open in IMG/M
3300007276\|Ga0070747_1102195	All Organisms → Viruses → Predicted Viral	1056	Open in IMG/M
3300007276\|Ga0070747_1199927	Not Available	704	Open in IMG/M
3300007276\|Ga0070747_1232795	Not Available	643	Open in IMG/M
3300007276\|Ga0070747_1285494	Not Available	569	Open in IMG/M
3300007276\|Ga0070747_1288533	Not Available	565	Open in IMG/M
3300007276\|Ga0070747_1304676	Not Available	547	Open in IMG/M
3300007276\|Ga0070747_1329794	Not Available	522	Open in IMG/M
3300007540\|Ga0099847_1057253	Not Available	1219	Open in IMG/M
3300007555\|Ga0102817_1129376	Not Available	561	Open in IMG/M
3300007558\|Ga0102822_1029879	All Organisms → Viruses → Predicted Viral	1304	Open in IMG/M
3300007715\|Ga0102827_1008651	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2325	Open in IMG/M
3300008995\|Ga0102888_1107192	Not Available	571	Open in IMG/M
3300008999\|Ga0102816_1152295	Not Available	717	Open in IMG/M
3300009002\|Ga0102810_1173865	Not Available	662	Open in IMG/M
3300009024\|Ga0102811_1129699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	943	Open in IMG/M
3300009071\|Ga0115566_10093425	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1947	Open in IMG/M
3300009071\|Ga0115566_10377035	Not Available	822	Open in IMG/M
3300009074\|Ga0115549_1077322	Not Available	1139	Open in IMG/M
3300009074\|Ga0115549_1106604	Not Available	934	Open in IMG/M
3300009076\|Ga0115550_1102515	All Organisms → Viruses → Predicted Viral	1055	Open in IMG/M
3300009079\|Ga0102814_10711024	Not Available	553	Open in IMG/M
3300009080\|Ga0102815_10075913	Not Available	1835	Open in IMG/M
3300009423\|Ga0115548_1156107	Not Available	718	Open in IMG/M
3300009426\|Ga0115547_1272030	Not Available	528	Open in IMG/M
3300009433\|Ga0115545_1102364	All Organisms → Viruses → Predicted Viral	1035	Open in IMG/M
3300009435\|Ga0115546_1163725	Not Available	780	Open in IMG/M
3300009440\|Ga0115561_1232940	Not Available	692	Open in IMG/M
3300009442\|Ga0115563_1230671	Not Available	697	Open in IMG/M
3300009505\|Ga0115564_10228667	Not Available	956	Open in IMG/M
3300009505\|Ga0115564_10628049	Not Available	504	Open in IMG/M
3300009507\|Ga0115572_10806169	Not Available	504	Open in IMG/M
3300010316\|Ga0136655_1230952	Not Available	551	Open in IMG/M
3300010392\|Ga0118731_102928946	Not Available	632	Open in IMG/M
3300013010\|Ga0129327_10514369	Not Available	650	Open in IMG/M
3300020166\|Ga0206128_1003733	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Verrucomicrobia phage P8625	12407	Open in IMG/M
3300020166\|Ga0206128_1041859	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2306	Open in IMG/M
3300020166\|Ga0206128_1042581	All Organisms → cellular organisms → Bacteria	2280	Open in IMG/M
3300020166\|Ga0206128_1100417	All Organisms → Viruses → Predicted Viral	1253	Open in IMG/M
3300020182\|Ga0206129_10387714	Not Available	530	Open in IMG/M
3300020185\|Ga0206131_10152080	Not Available	1212	Open in IMG/M
3300021378\|Ga0213861_10177023	Not Available	1183	Open in IMG/M
3300022072\|Ga0196889_1073038	Not Available	645	Open in IMG/M
3300022178\|Ga0196887_1017448	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2178	Open in IMG/M
3300022178\|Ga0196887_1024865	All Organisms → Viruses → Predicted Viral	1734	Open in IMG/M
3300022178\|Ga0196887_1038248	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1290	Open in IMG/M
3300022178\|Ga0196887_1141055	Not Available	500	Open in IMG/M
3300022208\|Ga0224495_10305500	Not Available	640	Open in IMG/M
3300023699\|Ga0228695_1042053	Not Available	647	Open in IMG/M
3300024180\|Ga0228668_1053701	Not Available	793	Open in IMG/M
3300024236\|Ga0228655_1051523	Not Available	943	Open in IMG/M
3300024247\|Ga0228675_1023419	Not Available	1468	Open in IMG/M
3300024320\|Ga0233398_1001597	All Organisms → cellular organisms → Bacteria	8514	Open in IMG/M
3300024320\|Ga0233398_1025754	All Organisms → Viruses → Predicted Viral	1651	Open in IMG/M
3300024320\|Ga0233398_1149597	Not Available	515	Open in IMG/M
3300024346\|Ga0244775_10120994	Not Available	2218	Open in IMG/M
3300024346\|Ga0244775_10302870	Not Available	1325	Open in IMG/M
3300024346\|Ga0244775_10750207	Not Available	784	Open in IMG/M
3300024346\|Ga0244775_10868178	Not Available	718	Open in IMG/M
3300025508\|Ga0208148_1112576	Not Available	571	Open in IMG/M
3300025543\|Ga0208303_1036057	Not Available	1282	Open in IMG/M
3300025570\|Ga0208660_1070745	Not Available	818	Open in IMG/M
3300025594\|Ga0209094_1054604	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1022	Open in IMG/M
3300025621\|Ga0209504_1032980	All Organisms → Viruses → Predicted Viral	1763	Open in IMG/M
3300025640\|Ga0209198_1196997	Not Available	515	Open in IMG/M
3300025645\|Ga0208643_1080332	Not Available	931	Open in IMG/M
3300025645\|Ga0208643_1117274	Not Available	710	Open in IMG/M
3300025645\|Ga0208643_1175687	Not Available	523	Open in IMG/M
3300025652\|Ga0208134_1027483	Not Available	2041	Open in IMG/M
3300025652\|Ga0208134_1063597	All Organisms → Viruses → Predicted Viral	1121	Open in IMG/M
3300025652\|Ga0208134_1165966	Not Available	542	Open in IMG/M
3300025654\|Ga0209196_1182237	Not Available	556	Open in IMG/M
3300025696\|Ga0209532_1155894	Not Available	700	Open in IMG/M
3300025816\|Ga0209193_1032097	Not Available	1563	Open in IMG/M
3300025816\|Ga0209193_1139369	Not Available	571	Open in IMG/M
3300025860\|Ga0209119_1175640	Not Available	855	Open in IMG/M
3300025892\|Ga0209630_10061685	All Organisms → Viruses → environmental samples → uncultured marine virus	2174	Open in IMG/M
3300025892\|Ga0209630_10104769	Not Available	1518	Open in IMG/M
3300025892\|Ga0209630_10458688	Not Available	536	Open in IMG/M
3300026483\|Ga0228620_1114364	Not Available	539	Open in IMG/M
3300027525\|Ga0208437_1094077	Not Available	692	Open in IMG/M
3300027751\|Ga0208304_10038047	Not Available	1897	Open in IMG/M
3300027757\|Ga0208671_10355906	Not Available	512	Open in IMG/M
3300028135\|Ga0228606_1034823	Not Available	1367	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	45.63%
Pelagic	Environmental → Aquatic → Marine → Pelagic	25.24%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.65%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	10.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.83%
Sediment	Environmental → Aquatic → Marine → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	44.66%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	25.24%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	11.65%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	10.68%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.83%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.97%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	33.01%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	19.42%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	11.65%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	9.71%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	5.83%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	5.83%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	5.83%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.85%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.94%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.97%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300005942	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.757	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006920	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12	Environmental	Open in IMG/M
3300007229	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA	Environmental	Open in IMG/M
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007540	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG	Environmental	Open in IMG/M
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental	Open in IMG/M
3300007558	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.733	Environmental	Open in IMG/M
3300007715	Estuarine microbial communities from the Columbia River estuary - metaG S.751	Environmental	Open in IMG/M
3300008995	Estuarine microbial communities from the Columbia River estuary - metaG 1551A-3	Environmental	Open in IMG/M
3300008999	Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545	Environmental	Open in IMG/M
3300009002	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573	Environmental	Open in IMG/M
3300009024	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705	Environmental	Open in IMG/M
3300009071	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405	Environmental	Open in IMG/M
3300009074	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430	Environmental	Open in IMG/M
3300009076	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511	Environmental	Open in IMG/M
3300009079	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009423	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009440	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300013010	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNA	Environmental	Open in IMG/M
3300020166	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1	Environmental	Open in IMG/M
3300020182	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300021378	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131	Environmental	Open in IMG/M
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental	Open in IMG/M
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300023699	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 81R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024180	Seawater microbial communities from Monterey Bay, California, United States - 82D	Environmental	Open in IMG/M
3300024236	Seawater microbial communities from Monterey Bay, California, United States - 67D	Environmental	Open in IMG/M
3300024247	Seawater microbial communities from Monterey Bay, California, United States - 36D_r	Environmental	Open in IMG/M
3300024320	Seawater microbial communities from Monterey Bay, California, United States - 38D	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025570	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025594	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430 (SPAdes)	Environmental	Open in IMG/M
3300025621	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 (SPAdes)	Environmental	Open in IMG/M
3300025640	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)	Environmental	Open in IMG/M
3300025645	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300025654	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental	Open in IMG/M
3300025860	Pelagic Microbial community sample from North Sea - COGITO 998_met_03 (SPAdes)	Environmental	Open in IMG/M
3300025892	Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)	Environmental	Open in IMG/M
3300026483	Seawater microbial communities from Monterey Bay, California, United States - 23D	Environmental	Open in IMG/M
3300027525	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705 (SPAdes)	Environmental	Open in IMG/M
3300027751	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)	Environmental	Open in IMG/M
3300027757	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759 (SPAdes)	Environmental	Open in IMG/M
3300028135	Seawater microbial communities from Monterey Bay, California, United States - 7D	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100775873	3300000101	Marine	MGYTTKIKITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
DelMOSum2011_100502813	3300000115	Marine	MGYTTKNEITMSEPKETTQLDAMVAGLKMLYDAMENPPAPPADEEEETETKENRWIH*
DelMOSum2011_100861283	3300000115	Marine	MSETKETPLDAMVAGLNMLYDAMENPPQPTDEEEETETKENRWIH*
DelMOSum2011_100928442	3300000115	Marine	MSEPKETPLDAMVAGLNMLYDAMENPPQPTDEEEETETKENKWIH*
DelMOSum2011_101156452	3300000115	Marine	MGYTTKNEITMSEPKETTPLDAMVEGLKMLYEAMENPPAPPADEDEETETKENRWIH*
JGI20151J14362_100975491	3300001346	Pelagic Marine	MSEPKETTPLDAMVAGLNKLYDAMEGTPAPPADEDEETEIKENRWI
Ga0070742_100234055	3300005942	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMEAPPAPPADEEEETETKENKWIH*
Ga0075466_10497274	3300006029	Aqueous	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0070744_102346562	3300006484	Estuarine	MSEPKETPLDAMVAGLNLLYDAMENPPEPPADEEEETETKENKWIH*
Ga0075467_103348063	3300006803	Aqueous	MSEPKETTPLDAMVAGLNMLYDAMENPPAPTADEDEETETKENRWIR*
Ga0075467_106950432	3300006803	Aqueous	MSEPKETTPLDAMVAGLNMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0075467_107149662	3300006803	Aqueous	MGYTTKNEITMSEPKETTPLDAMVAGLNMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0070748_11016144	3300006920	Aqueous	MSEQKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0070748_11295643	3300006920	Aqueous	MGYTTKIKITMSEPKETTSLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0075468_101249382	3300007229	Aqueous	MSEPKETPLDAMVAGLNLLYDAMESPPAPPADEEEETETKENKWIH*
Ga0075469_100480875	3300007231	Aqueous	MEPKETTPIDAMVAGLNLLYDAMENPPQADEEEETETKEN
Ga0075469_100567113	3300007231	Aqueous	MSEPKETTPLDAMMAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0075469_101960602	3300007231	Aqueous	VMNEPKETTPLDAMVAGLNLLYDAMESPPAPPADEGDDDE*
Ga0070747_10403971	3300007276	Aqueous	PLDAMVAGLKMLYDAMENPPAPPADEEEETETKENRWIH*
Ga0070747_10534805	3300007276	Aqueous	MNEPKETPLDAMVAGLNLLYDAMESPPAPPADEDEETETKENKWIH*
Ga0070747_11021953	3300007276	Aqueous	MEPKETTPIDAMVAGLNLLYDAMENPPQADEEEETETKENKWIH*
Ga0070747_11999271	3300007276	Aqueous	KETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0070747_12327953	3300007276	Aqueous	MEPKETPIDAMVAGLNLLYDAMENPPQADEEEETETKENRWIH*
Ga0070747_12854942	3300007276	Aqueous	MGYTTQNEITMSEPKETTPLDAMVAGLNMLYDAMENPPADEDEETETKENRWIH*
Ga0070747_12885333	3300007276	Aqueous	MSEPKETPLDAMVAGLNLLYDAMDSPPAPPADEEEETE
Ga0070747_13046762	3300007276	Aqueous	MNEPKETTPLDAMVAGLNKLYDAMENPPQADEEEETETKENKWIH*
Ga0070747_13297942	3300007276	Aqueous	MEPKETTTLDAMVAGLNLLYDAMETPPQADEEEETETKENKWIH*
Ga0099847_10572532	3300007540	Aqueous	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0102817_11293761	3300007555	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMENPPAPPADEEEETETKENKW
Ga0102822_10298793	3300007558	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMESPPAPPADEEEETETKENKWIH*
Ga0102827_10086513	3300007715	Estuarine	MNEPKETTPLDAMVVGLNKLYDAMESPPAPPADEEEETETKENKWIH*
Ga0102888_11071923	3300008995	Estuarine	MSEPKETPLDAMVAGLNLLYDAMENPPKPPADEEEETETKENKWIH*
Ga0102816_11522953	3300008999	Estuarine	MEPKETTPLDAMVAGLNLLYDAMENPPKPPADEEEETETKENKWIH*
Ga0102810_11738653	3300009002	Estuarine	MNEPKETPLDAMVAGLNLLYDAMEAPPAPPADEEEETETKENKWIH*
Ga0102811_11296991	3300009024	Estuarine	PLGYTTSKQTVMNEPKETTPLDAMVVGLNKLYDAMESPPAPPADEEEETETKENKWIH*
Ga0115566_100934251	3300009071	Pelagic Marine	SEPKETPLDAMVAGLNMLYDAMENPPQPTDEEEETETKENKWIH*
Ga0115566_103770351	3300009071	Pelagic Marine	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRWIH*
Ga0115549_10773222	3300009074	Pelagic Marine	MGYTTKNEITMSEPKETTPLDAMVVGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0115549_11066042	3300009074	Pelagic Marine	MSEPKETPLDAMVAGLNKLYDAMENPPAPPADEDEETEVKENRWIH*
Ga0115550_11025153	3300009076	Pelagic Marine	MSEPKETPLDAMVAGLNMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0102814_107110242	3300009079	Estuarine	MEPKETTPLDAMVAGLNKLYDAMESPPAPPADEEEETETKENKWIH*
Ga0102815_100759135	3300009080	Estuarine	MSEPKETTPLDAMVVGLNLLYDAMESPPAPPADEDEETETKENKWIH*
Ga0115548_11561071	3300009423	Pelagic Marine	PKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0115547_12720303	3300009426	Pelagic Marine	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEE
Ga0115545_11023642	3300009433	Pelagic Marine	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRWIH*
Ga0115546_11637255	3300009435	Pelagic Marine	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADED
Ga0115561_12329402	3300009440	Pelagic Marine	MNEPKETTPLDAMVAGLNLLYDAMESPPVPPADEEEETETKENRWIH*
Ga0115563_12306713	3300009442	Pelagic Marine	MNEPKETTPLDAMVAGLNLLYDAMESPPAPPADEEEETETKENRWIH*
Ga0115564_102286675	3300009505	Pelagic Marine	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMEKPPQPADEDEETETKENRWIH*
Ga0115564_106280492	3300009505	Pelagic Marine	MEPKETPLDAMVAGLNLLYDAMESPPAPPADEEEETETKENRWIH*
Ga0115572_108061691	3300009507	Pelagic Marine	ADNMSEPKETPLDAMVAGLNMLYDAMENPPQPTDEEEETETKENKWIH*
Ga0136655_12309521	3300010316	Freshwater To Marine Saline Gradient	MGYTTKNEITMSEPKETTPLDAMVEGLKMLYDAMENPPQPTDEEEETETKENRWIH*
Ga0118731_1029289463	3300010392	Marine	SKQHHTNTMGYTTKNEIIMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0129327_105143693	3300013010	Freshwater To Marine Saline Gradient	MGYTTKNQINMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH*
Ga0206128_100373316	3300020166	Seawater	MNEPKETTPIDAMVAGLNLLYDAMENPPQADEDEETETKENRWIH
Ga0206128_10418597	3300020166	Seawater	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH
Ga0206128_10425817	3300020166	Seawater	MSEPKETTPIDAMVAGLNLLYDAMENPPQADEDEETETKENKWIH
Ga0206128_11004172	3300020166	Seawater	MEPKETPLDAMVAGLNLLYDAMENPPQADEEEETETKENKWIH
Ga0206129_103877142	3300020182	Seawater	MSEPKETTTLDAMVAGLNLLYDAMENPPQADEDEETETKENKWIH
Ga0206131_101520804	3300020185	Seawater	MEPKETPIDAMVAGLNLLYDAMENPQQADEEEETETKENKWIH
Ga0213861_101770234	3300021378	Seawater	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPTDEEEETETKENRWIH
Ga0196889_10730384	3300022072	Aqueous	MSEPKETTPLDAMVAGLNKLYDAMENPPAPPADEDP
Ga0196887_10174484	3300022178	Aqueous	MGYTTKIKITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH
Ga0196887_10248656	3300022178	Aqueous	MEPKETTPIDAMVAGLNLLYDAMENPPQADEEEETETKENKWIH
Ga0196887_10382482	3300022178	Aqueous	MEPKETPIDAMVAGLNLLYDAMENPPQADEEEETETKENRWIH
Ga0196887_11410552	3300022178	Aqueous	MSEPKETPLDAMVAGLNLLYDAMESPPAPPADEEEETETKENKWIH
Ga0224495_103055002	3300022208	Sediment	MEPKETTPLDAMVAGLNLLYDAMESPPAPLADEDEETETKENRWIR
Ga0228695_10420533	3300023699	Seawater	MEPKETTTLDAMVAGLNLLYDAMETPPAPPADEEEETETKENKWIH
Ga0228668_10537012	3300024180	Seawater	MEPKETPIDAMVAGLNLLYDAMETPPAPPADEDEETETKENKWIH
Ga0228655_10515231	3300024236	Seawater	MEPKETTPIDAMVAGLNLLYDAMESPPAPPADEDEETETKENKWI
Ga0228675_10234192	3300024247	Seawater	MEPKETPIDAMVAGLNLLYDAMESPPAPPADEDEETETKENKWIH
Ga0233398_100159712	3300024320	Seawater	MEPKETTPLDAMVAGLNLLYDAMESPPAPPADEDEETETKESKWIH
Ga0233398_10257544	3300024320	Seawater	MEPKETTPIDAMVAGLNLLYDAMESPPAPPADEDEETETKENKWIH
Ga0233398_11495971	3300024320	Seawater	MEPKETPIDAMVAGLNLLYDAMESPPAPPADEDEETETKE
Ga0244775_101209946	3300024346	Estuarine	MNEPKETTPLDAMVVGLNKLYDAMESPPAPPADEEEETETKENKWIH
Ga0244775_103028701	3300024346	Estuarine	MVAGLNLLYDAMENPPEPPADEEEETETKENKWIH
Ga0244775_107502074	3300024346	Estuarine	TKQTVMSEPKETPLDAMVAGLNLLYDAMENPPKPPADEEEETETKENKWIH
Ga0244775_108681782	3300024346	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMEAPPAPPADEEEETETKENKWIH
Ga0208148_11125761	3300025508	Aqueous	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH
Ga0208303_10360573	3300025543	Aqueous	MGYTTKNEITMSEPKETTQLDAMVAGLKMLYDAMENPPQPTDEEEETETKENRWIH
Ga0208660_10707452	3300025570	Aqueous	MSEPKETTPLDAMVAGLNKLYDAMENPPAPPADEDEETETKENKWIH
Ga0209094_10546044	3300025594	Pelagic Marine	MSEPKETPLDAMVAGLNKLYDAMENPPAPPADEDEETETKENRWIH
Ga0209504_10329805	3300025621	Pelagic Marine	MSEPKETPLDAMVAGLNMLYDAMENPPQPTDEEEETETKENKWIH
Ga0209198_11969973	3300025640	Pelagic Marine	MNEPKETTPLDAMVAGLNLLYDAMESPPAPPADEEEETETKENRWIH
Ga0208643_10803322	3300025645	Aqueous	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPTDEEEETETKENRWIH
Ga0208643_11172743	3300025645	Aqueous	MGYTTKIKITMSEPKETTSLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH
Ga0208643_11756872	3300025645	Aqueous	MSEPKETTPLDAMVAGLNKLYDAMENPPAPPADEDEETETKENKWIR
Ga0208134_10274836	3300025652	Aqueous	MGYTTKNEINMSEQKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETETKENRWIH
Ga0208134_10635972	3300025652	Aqueous	MSEPKETTPLDAMVAGLNKLYDAMENPPAPPADEDEETETKENRWIH
Ga0208134_11659662	3300025652	Aqueous	MEPKETTTLDAMVAGLNLLYDAMETPPQADEEEETETKENKWIH
Ga0209196_11822374	3300025654	Pelagic Marine	MSEPKETTTLDAMVAGLNLLYDAMESPPAPPADEEEETETKENRWIH
Ga0209532_11558942	3300025696	Pelagic Marine	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRWIH
Ga0209193_10320971	3300025816	Pelagic Marine	MSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRW
Ga0209193_11393691	3300025816	Pelagic Marine	TKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRWIH
Ga0209119_11756405	3300025860	Pelagic Marine	MSEPKETPLDAMVAGLNMLYDAMENPPAPPADEDEETETKENRWIH
Ga0209630_100616854	3300025892	Pelagic Marine	MSEPKETTPLDAMVAGLNKLYDAMEGTPAPPADEDEETEIKENRWIH
Ga0209630_101047693	3300025892	Pelagic Marine	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKENRWIH
Ga0209630_104586881	3300025892	Pelagic Marine	MGYTTKNEITMSEPKETTPLDAMVAGLKMLYDAMENPPAPPADEDEETEIKEN
Ga0228620_11143642	3300026483	Seawater	PKETTPIDAMVAGLNLLYDAMESPPAPPADEDEETETKENKWIH
Ga0208437_10940773	3300027525	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMEAPPAPPADEEEETETK
Ga0208304_100380476	3300027751	Estuarine	MNEPKETTPLDAMVAGLNKLYDAMESPPAPPADEEEETETKENKWIH
Ga0208671_103559063	3300027757	Estuarine	MSEPKETTPLDAMVVGLNLLYDAMESPPAPPADEDEETETKENKWIH
Ga0228606_10348235	3300028135	Seawater	MEPKETTPIDAMVAGLNLLYDAMESPPAPPADEDEETETKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099271

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences