Metagenome / Metatranscriptome Family F099384

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099384
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	94 residues
Representative Sequence	QDELSVRAVEGLKADGVAVPTGKPTAITGADVADATHIFAIGCTLPDAARQSGKAADWSDVPDDQGYGPMRDAIVRHVKRLLDELQR
Number of Associated Samples	86
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	8.74 %
% of genes near scaffold ends (potentially truncated)	90.29 %
% of genes from short scaffolds (< 2000 bps)	89.32 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (8.738 % of family members)
Environment Ontology (ENVO)	Unclassified (35.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.78% β-sheet: 5.22% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF09828	Chrome_Resist	5.83
PF06439	3keto-disac_hyd	5.83
PF12704	MacB_PCD	2.91
PF01790	LGT	1.94
PF06224	HTH_42	1.94
PF07485	DUF1529	1.94
PF09699	Paired_CXXCH_1	1.94
PF00069	Pkinase	1.94
PF04116	FA_hydroxylase	1.94
PF13343	SBP_bac_6	0.97
PF01545	Cation_efflux	0.97
PF00072	Response_reg	0.97
PF00106	adh_short	0.97
PF14417	MEDS	0.97
PF04879	Molybdop_Fe4S4	0.97
PF13435	Cytochrome_C554	0.97
PF13620	CarboxypepD_reg	0.97
PF05199	GMC_oxred_C	0.97
PF04264	YceI	0.97
PF10685	KGG	0.97
PF07987	DUF1775	0.97
PF07876	Dabb	0.97
PF14534	DUF4440	0.97
PF13450	NAD_binding_8	0.97
PF07690	MFS_1	0.97
PF01987	AIM24	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.77
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	1.94
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	1.94
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	1.94
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.97
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.97
COG2013	AIM24 protein, required for mitochondrial respiration	Energy production and conversion [C]	0.97
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.97
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	0.97
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.97
COG4549	Uncharacterized conserved protein YcnI, contains cohesin/reeler-like domain	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.11 %
Unclassified	root	N/A	36.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	22.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.71 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.59 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.94 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.94 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.94 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.97 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.97 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.97 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.97 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.97 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.97 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.97 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	0.97 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.97 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.97 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.97 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.59 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Pyxidicoccus fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus fallax	0.97 %
Gemmatimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	0.97 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.97 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.97 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_108405253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2327	Open in IMG/M
3300000956\|JGI10216J12902_103527738	Not Available	571	Open in IMG/M
3300000956\|JGI10216J12902_111814146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2623	Open in IMG/M
3300003203\|JGI25406J46586_10000232	All Organisms → cellular organisms → Bacteria	24721	Open in IMG/M
3300004114\|Ga0062593_103135614	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	529	Open in IMG/M
3300004153\|Ga0063455_100340092	Not Available	849	Open in IMG/M
3300004156\|Ga0062589_101416983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300004156\|Ga0062589_102310149	Not Available	553	Open in IMG/M
3300004479\|Ga0062595_100818161	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300004480\|Ga0062592_100089040	All Organisms → cellular organisms → Bacteria → Proteobacteria	1865	Open in IMG/M
3300005093\|Ga0062594_102402739	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005289\|Ga0065704_10521097	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300005293\|Ga0065715_10248269	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300005293\|Ga0065715_10670598	Not Available	668	Open in IMG/M
3300005295\|Ga0065707_10235317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300005336\|Ga0070680_100272270	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300005340\|Ga0070689_100399952	Not Available	1161	Open in IMG/M
3300005353\|Ga0070669_100407787	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300005353\|Ga0070669_101627157	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300005466\|Ga0070685_11528103	All Organisms → cellular organisms → Bacteria → Acidobacteria	515	Open in IMG/M
3300005535\|Ga0070684_100163818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2018	Open in IMG/M
3300005539\|Ga0068853_101480842	Not Available	657	Open in IMG/M
3300005543\|Ga0070672_100643382	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300005549\|Ga0070704_100134994	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300005564\|Ga0070664_102070819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300005617\|Ga0068859_101907897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300005617\|Ga0068859_101926300	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300005618\|Ga0068864_101724019	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300005764\|Ga0066903_100771395	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300005841\|Ga0068863_101372166	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300005844\|Ga0068862_102119672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300006042\|Ga0075368_10043664	Not Available	1766	Open in IMG/M
3300006046\|Ga0066652_101328799	Not Available	677	Open in IMG/M
3300006358\|Ga0068871_100146340	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2012	Open in IMG/M
3300006577\|Ga0074050_10100741	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006845\|Ga0075421_100061331	All Organisms → cellular organisms → Bacteria → Proteobacteria	4752	Open in IMG/M
3300006847\|Ga0075431_100047227	All Organisms → cellular organisms → Bacteria	4438	Open in IMG/M
3300006881\|Ga0068865_100063269	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300007076\|Ga0075435_101772048	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300009137\|Ga0066709_104095322	Not Available	530	Open in IMG/M
3300009147\|Ga0114129_11125969	Not Available	981	Open in IMG/M
3300009147\|Ga0114129_12740628	Not Available	587	Open in IMG/M
3300009147\|Ga0114129_13188506	Not Available	534	Open in IMG/M
3300009156\|Ga0111538_10785977	All Organisms → cellular organisms → Bacteria → Proteobacteria	1205	Open in IMG/M
3300009156\|Ga0111538_11679364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300009553\|Ga0105249_12485150	Not Available	590	Open in IMG/M
3300010044\|Ga0126310_10715383	Not Available	761	Open in IMG/M
3300010044\|Ga0126310_10731425	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300010046\|Ga0126384_11892437	Not Available	568	Open in IMG/M
3300010359\|Ga0126376_13060341	Not Available	517	Open in IMG/M
3300010360\|Ga0126372_10314155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1385	Open in IMG/M
3300010373\|Ga0134128_11664969	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300010373\|Ga0134128_12926168	Not Available	526	Open in IMG/M
3300010396\|Ga0134126_11946452	Not Available	643	Open in IMG/M
3300010400\|Ga0134122_12402762	Not Available	574	Open in IMG/M
3300010401\|Ga0134121_10779560	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300010403\|Ga0134123_10093085	All Organisms → cellular organisms → Bacteria	2380	Open in IMG/M
3300011444\|Ga0137463_1188710	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300012189\|Ga0137388_11280076	Not Available	672	Open in IMG/M
3300012479\|Ga0157348_1008313	Not Available	687	Open in IMG/M
3300012958\|Ga0164299_11180917	Not Available	578	Open in IMG/M
3300012971\|Ga0126369_11757628	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300012971\|Ga0126369_12864324	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012986\|Ga0164304_11180447	Not Available	617	Open in IMG/M
3300014326\|Ga0157380_10720204	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005	Open in IMG/M
3300014745\|Ga0157377_10284263	Not Available	1085	Open in IMG/M
3300014745\|Ga0157377_11736341	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300015371\|Ga0132258_10037682	All Organisms → cellular organisms → Bacteria → Acidobacteria	10922	Open in IMG/M
3300015373\|Ga0132257_101506714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus fallax	858	Open in IMG/M
3300015373\|Ga0132257_101856588	Not Available	775	Open in IMG/M
3300015373\|Ga0132257_103718341	All Organisms → cellular organisms → Bacteria → Acidobacteria	555	Open in IMG/M
3300015374\|Ga0132255_103368348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300016357\|Ga0182032_11950259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300017792\|Ga0163161_11096324	Not Available	684	Open in IMG/M
3300018028\|Ga0184608_10331658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300021082\|Ga0210380_10406969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300021344\|Ga0193719_10271548	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300022756\|Ga0222622_11013537	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300023261\|Ga0247796_1027130	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300025923\|Ga0207681_11020238	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300025926\|Ga0207659_10894455	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	763	Open in IMG/M
3300025928\|Ga0207700_11774204	All Organisms → cellular organisms → Bacteria → Acidobacteria	543	Open in IMG/M
3300025932\|Ga0207690_11812393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	509	Open in IMG/M
3300025945\|Ga0207679_11061730	Not Available	743	Open in IMG/M
3300025945\|Ga0207679_11362726	Not Available	651	Open in IMG/M
3300027794\|Ga0209480_10471999	Not Available	511	Open in IMG/M
3300027909\|Ga0209382_10341733	All Organisms → cellular organisms → Bacteria → Proteobacteria	1679	Open in IMG/M
3300028380\|Ga0268265_12113910	Not Available	570	Open in IMG/M
3300028802\|Ga0307503_10569484	Not Available	621	Open in IMG/M
3300030294\|Ga0311349_11951112	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031184\|Ga0307499_10287477	Not Available	537	Open in IMG/M
3300031547\|Ga0310887_10520938	Not Available	719	Open in IMG/M
3300031716\|Ga0310813_11426923	Not Available	643	Open in IMG/M
3300031995\|Ga0307409_100351136	All Organisms → cellular organisms → Bacteria	1392	Open in IMG/M
3300032012\|Ga0310902_11092490	Not Available	558	Open in IMG/M
3300032174\|Ga0307470_10714784	Not Available	765	Open in IMG/M
3300032180\|Ga0307471_101604428	All Organisms → cellular organisms → Bacteria → Acidobacteria	807	Open in IMG/M
3300032180\|Ga0307471_102163575	Not Available	700	Open in IMG/M
3300032211\|Ga0310896_10205468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	972	Open in IMG/M
3300032256\|Ga0315271_11589545	Not Available	563	Open in IMG/M
3300032256\|Ga0315271_11645439	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300033412\|Ga0310810_10063424	All Organisms → cellular organisms → Bacteria	4476	Open in IMG/M
3300033550\|Ga0247829_10295910	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.28%
Host-Associated	Host-Associated	41.75%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.46%
Plants	Host-Associated → Plants	41.75%
Aquatic	Environmental → Aquatic	5.83%
Wastewater	Engineered → Wastewater	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.48%
Freshwater	Environmental → Aquatic → Freshwater	2.91%
Sediment	Environmental → Aquatic → Sediment	2.91%
Roots	Host-Associated → Plants → Roots	1.94%
Peat	Environmental → Terrestrial → Peat	0.97%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.74%
Loam	Environmental → Terrestrial → Soil → Loam	7.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Lake	Environmental → Aquatic → Freshwater → Lake	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.97%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.94%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012479	Unplanted soil (control) microbial communities from North Carolina - M.Soil.1.yng.030610	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023261	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S166-409R-6	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027794	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 6/11/14 C2 DNA (SPAdes)	Engineered	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1084052534	3300000955	Soil	PFRATFRGTSPQDDLSVRAVEGLKADGVAVPIGKPAAITGADVADATHLFAIGCTLPDAARRSGKVADWSDVPDDQGYGPMRDAIVRHVKLLLDELQR*
JGI10216J12902_1035277381	3300000956	Soil	RAVAGLKADGIAIPQGAPTAIGDDDIKSATHIFAIGCSLPAAAISSGKAKDWSDVPDDQGYEAQRDAIVRHVKELLDQLQRGGR*
JGI10216J12902_1118141462	3300000956	Soil	MSTRAVAGLRADGIAIPDGKPSAIAPDDVERATHIFAIGCTLPSVAAKSGKAADWTDVPDDQGYAPMRDAIVRHVTALLDDLQKRGK*
JGI25406J46586_100002324	3300003203	Tabebuia Heterophylla Rhizosphere	VRTVEGLRADGIAIPDGRPRMITDADVSAAAYVFAIGCALPDRIRQSGKAFDWSDVPDDQGYAPMRDAIVRHVNELLDRLERR*
Ga0062593_1031356141	3300004114	Soil	AQDRGLPYRSTFRGTAPQEGLSTRVVDGLRADGLAIPEAKPTALQAGDISAATHIFAIGCVLPAAATQSGKAYDRSDVPDDQGYPAMRDAIVRHVRALLDSLASK*
Ga0063455_1003400922	3300004153	Soil	TFRGTSPQDELSVRAVAGLKADGLAVPSGKPSAITDGDVAGATHIFAIGCTLPDKARRSGKAADWSDVPDDQGYPPMRDAIVRHVTDLLNALAR*
Ga0062589_1014169832	3300004156	Soil	FRGTSPQEALSVRAVAGLKADGVPIPPGAPTAIGDADIKTATHIFAIGCALPAAASSSGKAKDWSDVPDDKGYEGQRDAIVRHVKELLDDLQRRRQ*
Ga0062589_1023101491	3300004156	Soil	YRATFRGTDPQAELSVSALKGLREDGIEIPAGKPTAISTTDVEKATHLFAIGCTLPAAARSSGKAGDWSDVPDGQGYAAMRDAIVRHVTALLDDLQKAR*
Ga0062595_1008181611	3300004479	Soil	PFRATFRGTAPQDDLSVRAVAGLKADGIDVPAGKPSAISDSDVAGATHIFAIGCTLPDKALASGKASDWSDVPDDQGYAPMRDAIVRHVKALLDELKR*
Ga0062592_1000890403	3300004480	Soil	PFRATFRGTSPQDNLSVRAVEGLKADGVVVPSGKPSAISDMDVADATHIFAIGCTLPDKARQSGKAADWSDVPDDQGYGPMRDAIVRHVKLLLDELQRSQKP*
Ga0062594_1024027391	3300005093	Soil	TDPQAELSVSALKGLREDGIEIPGGKPMAISQTDVEKATHVFAIGCTLPAVATSSGKASDWSDVPDGQGYAAMRDAIVRHVTALLDDLQKGR*
Ga0065704_105210971	3300005289	Switchgrass Rhizosphere	EGLKADGIAIPSGKPAAINDEDVAAATHIFAIGCTLPDKARQSGKAADWSDVPDDQGYAPMRDAIVRHVKALLDELQRSKKGARYEKLNDADGCAACR*
Ga0065715_102482693	3300005293	Miscanthus Rhizosphere	RATFRGTSPQDNLSVRAVEGLKADGVVVPSGKPSAISDMDVADATHIFAIGCTLPDKARQSGKAADWSDVPDDQGYGPMRDAIVRHVKLLLDELQRSQKP*
Ga0065715_106705981	3300005293	Miscanthus Rhizosphere	RATFRGTSPQDELSVRAVAGLKEDGIAVPSGKPSAISDGDVANATHIFAIGCTLPDKAGRSGKAHDWSDVPDDKGYGPMRDAIVRHVTELLDDLQKRRK*
Ga0065707_102353171	3300005295	Switchgrass Rhizosphere	YRATFRGTDPQAELSVSALKGLREDGVEVPSGKPAAISLADVEKATHVFAIGCTLPAAAKSSGKASDWNDVADGQGYAAMRDAIVRHVTALLDELQRTSRRP*
Ga0070680_1002722702	3300005336	Corn Rhizosphere	YRATFRGTDPQAELSVSALKGLREDGIEIPGGKPMAISQTDVEKATHVFAIGCTLPAVATSSGKASDWSDVPDGQGYAAMRDAIVRHVTALLDDLQKGR*
Ga0070689_1003999522	3300005340	Switchgrass Rhizosphere	AVEGLKADGVAVPTGKPSAISDTDVAEATHIFAIGCTLPEKAIRSGKSADWSDVPDDQGYGPMRDAIVRHVKALLDELERAKKGA*
Ga0070669_1004077871	3300005353	Switchgrass Rhizosphere	TPQDDLSVRAVEGLKADGVAVPSGKPAAIRGEDVASATHLFAIGCTLPEIARRSGKAADWSDVPDDLGYAPMRDAIVRHVKQLLDELQRSRDPNGA*
Ga0070669_1016271571	3300005353	Switchgrass Rhizosphere	GLPYRATFRGVTPDPELSARALEGLKGDGLAPPSDKPQAIADADIRTATHIFAIGCPLPDQAQRSGKADTWSDVPDNQGYGPMRDAIVVHVKALLDRLAAPGGPGAR*
Ga0070685_115281032	3300005466	Switchgrass Rhizosphere	FRGTTPQDDLSVRAVAGLKADGVAIPDGKPTAIGDADIASATHIFAIGCALPDKAQRSGKAADWSDVPDDQGYGAMRDAIVRHVRQLLDDLAR*
Ga0070684_1001638185	3300005535	Corn Rhizosphere	LSVSALKGLREDGLEIPAGKPSAISGQDVTDATHIFAIGCTLPAHAAASGKAADWSDVPDDKGYAPMRDAIRRHVEQLLDELTARR*
Ga0068853_1014808421	3300005539	Corn Rhizosphere	QDNLSVRAVEGLKADGFAIPSGKPTAISEADVTAATHIFAIGCTLPMAAVKSGKANDWADVPDDQGYAPMRDAIVRHVTALLDDLQTRRQ*
Ga0070672_1006433822	3300005543	Miscanthus Rhizosphere	PQDELSVRAVAGLKEDGVGVPSGKPGAISDGDVANATHIFAIGCTLPDKARRSGKADDWSDVPDDKGYGPMRDAIVRHVKELLDRLSAR*
Ga0070704_1001349943	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	RATFRGTSPQEALSVRAVQGLTADGVAIPKGVPTSLGDADIKSATHIFAIGCALPAAATSSGKARDWSDVPDDKGYEAQRDAIVRHVKQLLDDLQRRGR*
Ga0070664_1020708191	3300005564	Corn Rhizosphere	RTLAGLKADGVPVPNGKPTAISDADVVGATHIFAIGCTLPDKAVRSGKATDWSDVPDDQGYGPMRDAIVRHVNELIDQLHR*
Ga0068859_1019078972	3300005617	Switchgrass Rhizosphere	TFRGTSPQDNLSVRAVEGLKADGVAVPSGKPTAISDKDVVDATHIFAISCTLPDKARQSGKAADWSDVPDDQGYAPMRDAIVRHVQQLLNDLQR*
Ga0068859_1019263001	3300005617	Switchgrass Rhizosphere	RDRGLPYRATFRGTDPQAELSVSALKGLREDGIEIPGGKPMAISQTDVEKATHVFAIGCTLPAVATSSGKASDWSDVPDGQGYAAMRDAIVRHVTALLDDLQKGR*
Ga0068864_1017240191	3300005618	Switchgrass Rhizosphere	FRGTAPQDDLSVRTLAGLKADGVPVPNGKPTAISDADVVGATHIFAIGCTLPDKAVRSGKATDWSDVPDDQGYGPMRDAIVRHVNELIDQLHR*
Ga0066903_1007713953	3300005764	Tropical Forest Soil	YRAIFRGTAPQDELSVRTVAGLKADGVAIPVGKPSAISDQDVAGATHIFAIGCTLPNKAKASGKSEDWSDVPDDQGYGPMRDAIVRHVIALLDNLQKR*
Ga0068863_1013721662	3300005841	Switchgrass Rhizosphere	GTSPQAELSVSALKGLREDGLEIPAGKPSAISDQDVTDATHIFAIGCTLPAHAAASGKAADWSDVPDDKGYAPMRDAIRRHVEQLLDELTARR*
Ga0068862_1021196721	3300005844	Switchgrass Rhizosphere	QDDLSVRTLAGLKADGVPVPNGKPTAISDADVVGATHIFAIGCTLPDKAVRSGKATDWSDVPDDQGYGPMRDAIVRHVNELIDQLHR*
Ga0075368_100436641	3300006042	Populus Endosphere	EGLKADGLAIPSGKPAAISESDVSQATHIFAIGCTLPRAAATSGKAADWTDVPDDQGYGPMRDAIVRHVKALLDDLQAGR*
Ga0066652_1013287992	3300006046	Soil	PQEALSVRAVQGLTADGVPIPQGAPTAIADTDIKGATHIFAIGCTLPAAAKSSGKAKDWSDVPDDKGYDAQRDAIVRHVKELLDDLQRRGL*
Ga0068871_1001463402	3300006358	Miscanthus Rhizosphere	VRTLAGLKADGVPVPNGKPTAISDADVVGATHIFAIGCTLPDKAVRSGKATDWSDVPDDQGYGPMRDAIVRHVNELIDQLHR*
Ga0074050_101007411	3300006577	Soil	FNKLAAERKLTFRATFRGTSPQDDLSVRAVEGLKADGVAVPTGKPSAITGADVADATHIFAIGCTLPDAARRSGKAADWSDVPDDQGYGPMRDAIVRHVTLLLDELQR*
Ga0075421_1000613314	3300006845	Populus Rhizosphere	MSGSSHLGASTIATFRRTHYDCSRICHRATFRGTLPQDDLSVRAVEGLKADGLAVPSGKPSPINDKDVAGATHIFANRLHAAGKALASGKSTDWSDVPDDHGYAPMRDAIGRHVKTLPDDLGR*
Ga0075431_1000472271	3300006847	Populus Rhizosphere	TFRRTHYDCSRICHRATFRGTLPQDDLSVRAVEGLKADGLAVPSGKPSPINDKDVAGATHIFANRLHAAGKALASGKSTDWSDVPDDHGYAPMRDAIGRHVKALPDDLGR*
Ga0068865_1000632695	3300006881	Miscanthus Rhizosphere	DELSVRAVEGLKADGLTIPSGKPAAISDADVRDATHIFAIGCTLPQRALSSGKAADWTDVPDDQGYGPMRDAIVRHVRQLLDDLKR*
Ga0075435_1017720482	3300007076	Populus Rhizosphere	SVRVVAALKADGLAIPSGKPTAISDADVADATHIFAIGCTLPDKATRSGKAGDWSDVPEDQGYGPMRDAIVRHVKQLLDELQR*
Ga0066709_1040953221	3300009137	Grasslands Soil	ATFRGKSPKAELSERTVPALRADGIVVPSGKPSAISEADIDGATHIFAIGCTLPERARASGKAGDWSDVPEDRGYAAMRDTIVAHVKLLLDELQKTRK*
Ga0114129_111259693	3300009147	Populus Rhizosphere	AGLKADGLDVPSGKPAAISDRDVASATHIFAIGCTLPDKAAKSGKAADWSDVPDDQGYGPMRDAIVRHVKQLLDELQRRQQRGA*
Ga0114129_127406281	3300009147	Populus Rhizosphere	RGTAPQDDLSERAVAGLKADGMAIPSGKPTAISDKDVAAATHIFAIGCTLPDNVRRSGKASDWSDVPDDQGYAAMRDAIVRHVKLLLDDLQR*
Ga0114129_131885062	3300009147	Populus Rhizosphere	LPYRATFRGVAPQAELSERAVEALRADGIVVPTGKPAAIGEKDIEGATHIFAIGCALPQKARESGKAADWSDVPEDQGYAPMRDAIVRHVKELLDQLQAAKK*
Ga0111538_107859771	3300009156	Populus Rhizosphere	VRAVEGLKADGGAVPTGKPSAISDTDVADATHIFAIGCTLPEKAVRSGKSADWSDVPDDQGYGPMRDAIVRHVKQLLDALQRSNKGV*
Ga0111538_116793641	3300009156	Populus Rhizosphere	QEALSVRAVQGLTADGVAIPKGVPTSLGDADIKSATHIFAIGCALPAAATSSGKARDWSDVPDDKGYEAQRDAIVRHVKELLDDLQRRGR*
Ga0105249_124851501	3300009553	Switchgrass Rhizosphere	GLKADGVAVPSGKPAAIRGEDVASATHLFAIGCTLPEIARRSGKAADWSDVPDDLGYAPMRDAIVRHVKQLLDELQRSRDPNGA*
Ga0126310_107153831	3300010044	Serpentine Soil	QDELSVRAVEGLKADGVAVPTGKPTAITGADVADATHIFAIGCTLPDAARQSGKAADWSDVPDDQGYGPMRDAIVRHVKRLLDELQR*
Ga0126310_107314252	3300010044	Serpentine Soil	MRCTDGYGLHVVATGDLNKVAAEGGLPYRGTFRGTSPQDDLSARAVAGLKDDGILAPSGKPAAITDDDVASATQIFAIGCALPDKTRRSGKADEWSDVPDDKGYGPMRDAIVAHVEELLDRLAAR*
Ga0126384_118924371	3300010046	Tropical Forest Soil	AGLRADGIAIPDGKPSAIAPDDVARATHIFAIGCPLPTAVTASGKAADWSDVPDDQGYAPMRNAIVRHVTALLDDLQKREK*
Ga0126376_130603412	3300010359	Tropical Forest Soil	ERGLPHRATFRGTTPQDDLSVRAVAGLKADGVAVPTGKPTAISDNDVAGATHIFAIGCTLPDKARRSGKAADWSDVPDDQGYGPMRDAIVTHVRQLLDELQRRKPRYLQ*
Ga0126372_103141551	3300010360	Tropical Forest Soil	KEDGVAIPSGKPAAISDTDVAGATHIFAIGCTLPDNALRSGKAADWSDVPDDRGYAAMRDAIVAHVKQLLDELAAREELVR*
Ga0134128_116649692	3300010373	Terrestrial Soil	AMAVEGLKADGVPIPAGRPTAISDADVAGATHVFAIGCVLPDKARQSGKAEDWSDVPGDNGYAPMRDAIVRHVKQLLDTLASASPRRGALQP*
Ga0134128_129261681	3300010373	Terrestrial Soil	ATFRGTSPQDELSVRAVAGLKEDGVAVPSGKPGAISDGDVANATHIFAIGCTLPDKARRSGKADDWSDVPDDKGYGPMRDAIVRHVKELLDRLSAR*
Ga0134126_119464521	3300010396	Terrestrial Soil	QDELSVRAVAGLKEDGVAVPSGKPGAISDGDVANATHIFAIGCTLPDKARRSGKADDWSDVPDDKGYGPMRDAIVRHVKELLDRLSAR*
Ga0134122_124027622	3300010400	Terrestrial Soil	GLPYRATFRGTDPQAELSVSALKGLREDGIEIPGGTPMAISQTDVEKATHVFAIGCTLPAVATSSGKASDWSDVPDGQGYAAMRDAIVRHVTALLDDLQKGR*
Ga0134121_107795601	3300010401	Terrestrial Soil	VRAVAGLKADGIDVPAGKPSAISDSDVAGATHIFAIGCTLPDKALASGKASDWSDVPDDQGYAPMRDAIVRHVKALLDELKR*
Ga0134123_100930853	3300010403	Terrestrial Soil	FNKLAAERNLPYLATFRGTSPQDALSVRAVQGLTADGVPIPAGAPTAIGDADIRNATHIFAIGCTLPQAAVSSGKAKDWSDVPDDKGYEAQRDAIVRHVKELLDDLQRRK*
Ga0137463_11887102	3300011444	Soil	RGANPQDALSARAIEGLRADGLSIPDQKPTPIAAADVEHVTHIFAIGCVLPKVAASSGKAADWSDVPDDKGYGPMRDAIVTHVRAVLDDIQRRKQ*
Ga0137388_112800761	3300012189	Vadose Zone Soil	ELSVAALKGLREDGIEIPAGKPTAVAPTDVERATHVFAIGCTLPSSATASGKAASWSDVPEGEGYARTRDAIVKHVTALLDELQHSSQMNPT*
Ga0157348_10083132	3300012479	Unplanted Soil	ARAVEGLKADGVAVPMGKPSAISDTDVADATHIFAIGCTLPEKAIRSGKAADWSDVPDDQGYGPMRDAIVRHVKALLDELQRQKRGA*
Ga0164299_111809171	3300012958	Soil	GLKADGIAVPPGKPAAITDSDVSNATHIFAIGCTLPDKAQRSGKAADWSDVPDDHGYDAMRDAIVRHVKELLDRLAAGQPRGLGSLLHSSDTRLLSI*
Ga0126369_117576281	3300012971	Tropical Forest Soil	TPQDDLSVRTVAGLKADGVPIPGGKPAAISDTDVSGATHIFAIGCTLPDKAVRSGKAADWSDVPDDQGYGPMRDAIVRHVTELLDQLALRRGR*
Ga0126369_128643242	3300012971	Tropical Forest Soil	FRATFRGTAPQDDLSVRAVAGLKADGVPIPSGKPSAIADQDIADATHIFAIGCTLPEKAQRSGKASDWSDVPDDQGYGPMRDAIVRHVRALLDQLQQR*
Ga0164304_111804472	3300012986	Soil	RATFRGTAPQEGLSPRVVEGLKGDGVPVPSGTPTALGAGDIETATHIFAIGCTLPAAAVTSGKSDDWSDVPDDQGYAAMRDAIVRHVRSLLDRLAQP*
Ga0157380_107202042	3300014326	Switchgrass Rhizosphere	LSVRAVQGLAADGVTIPQGVPTAIGDADIKSATHIFAIGCALPAAAKSSGKAKDWSDVPDDKGYEGQRDAIVRHVKELLDDLQRRGK*
Ga0157377_102842632	3300014745	Miscanthus Rhizosphere	VRAVEGLKADGVAVPTGKPSAISDTDVAEATHIFAIGCTLPEKAVRSGKSADWSDVPDDQGYGPMRDAIVRHVKALLDELERAKKGA*
Ga0157377_117363412	3300014745	Miscanthus Rhizosphere	VAGLKEDGIAVPSGKPAAISDGDIANATHIFAIGCTLPDKAQRSGKADDWSDVPDDKGYGPMRDAIVRHVKELLDRLQTGRAD*
Ga0132258_100376821	3300015371	Arabidopsis Rhizosphere	ATFRGRSPQDELSERAIAGLKEDGIAVPSGKPTAIGDEDIATATHIFAIGCALPDKARQSGKADDWSDVPDDKGYPAMRDAIVRHVKELLDRLAAR*
Ga0132257_1015067142	3300015373	Arabidopsis Rhizosphere	GLPYRATFRGTSPQDDLSERAVAGLKADGVPIPEGKPSLIAADDVARATHIFAIGCTLPAVATASGKASDWSDVPNDQGYGPMRDAIVRHVTALLDELQKRAK*
Ga0132257_1018565882	3300015373	Arabidopsis Rhizosphere	LPFRATFRGTTPQDNLSVRAVEGLKADGVAVPSGKPAEISDKDVVDATHIFAIGCTLPDKARQSGKAADWSDVPDDQGYAPMRDAIVRHVKQLLDELQRSKQP*
Ga0132257_1037183411	3300015373	Arabidopsis Rhizosphere	GLKADGVAIPSGKPTAISEADVSGATHIFAIGCTLPATAAKSGKARDWTDVPGDQGYAPMRDAIVRHVTALLDELQRRRQ*
Ga0132255_1033683482	3300015374	Arabidopsis Rhizosphere	VSPQEALSVRAVEGLRADGVPIPDGKPTAIGSGDVAGANYIFAIGCVLPRQATESGKAADWSDVPDNKGYGPMRDAI
Ga0182032_119502591	3300016357	Soil	TVAGLTADGVPIPSGKPTAISDADVSGATHIFAIGCTLPDKAMRSGKSADWSDVPDDQGYGPMRDAIVRHVKDLLDQLHR
Ga0163161_110963241	3300017792	Switchgrass Rhizosphere	GLKADGVAIPSGTPTAIGSGDVETATYIFAIGCTLPAAAAKSGKSRDWSDVPEDKGYEGTRDAIVRHVKELLDDLQRRK
Ga0184608_103316582	3300018028	Groundwater Sediment	DNLSVRAVEGLKADGVVVPSGKPAAISDKDVVNATNVFAIGCTLPDKARQSGKASDWSDVPDDQGYVPMRDAIVRHVKQLLDELQRDQQPKGQ
Ga0210380_104069691	3300021082	Groundwater Sediment	TSPQEALSVRAVAGLKADGVAIPQGAPTAIGDADIKGATHIFAIGCTLPAAAVSSGKSKDWADVPDDQGYEAQRDAIVRHVKELLDDLQRRGR
Ga0193719_102715481	3300021344	Soil	PQDELSARAVEGLKADGIVIPVGRPAGITADDVRDATYVFAIGCTLPDHARRSDKAHDWSDVPDDQGYGPMRDAIVRHVTQLLNNLSHAR
Ga0222622_110135372	3300022756	Groundwater Sediment	NLPYRATFRGTSPQEALSVRAVQGLTADGVPIPAGVPTAIGDEDIKTATHIFAIGCTLPKAAVASGKAKDWSDVPDDKGYDAQRDAIVRHVKELLDDLQRRK
Ga0247796_10271301	3300023261	Soil	LPYRATFRGTSPQDELSVRAVAGLKEDGIAVPSGKPSAISDGDVANATHIFAIGCTLPDKAGRSGKAHDWSDVPDDKGYGPMRDAIVRHVTELLDDLQKRRK
Ga0207681_110202381	3300025923	Switchgrass Rhizosphere	GLTADGVPIPAGAPTAIGDADIRTATHIFAIGCTLPQAAVSSGKAKDWSDVPDDKGYEAQRDAIVRHVKELLDDLQRRK
Ga0207659_108944551	3300025926	Miscanthus Rhizosphere	MRHSINWLSSVQATSCAVMRADGIAIPDGKPSAIAPDDVERATHIFAIGCTLPSVATQSGKASDWTDVPDDQGYAPMRDAIVRHVTALLDDLQKRGQ
Ga0207700_117742042	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LSVNAVAGLRADGIAIPGGKPSAIADRDIAMATHIFAIGCTLPSKARESGKAADWSDVPDDQGYGPMRDAIVRHVKALLDALQANAK
Ga0207690_118123931	3300025932	Corn Rhizosphere	MAVEGLKADGVPIPAGRPTAISDADVAGATHVFAIGCVLPDKARQSGKAEDWSDVPGDNGYAPMRDAIVRHVKQLLDTLASASPRRGALQP
Ga0207679_110617302	3300025945	Corn Rhizosphere	QDELSVRAVAGLKEDGIAVPSGKPSAISDGDVANATHIFAIGCTLPDKAGRSGKAHDWSDVPDDKGYGPMRDAIVRHVTELLDDLQKRRK
Ga0207679_113627261	3300025945	Corn Rhizosphere	VSALKGLREDGLEIPAGKPSAISGQDVTDATHIFAIGCTLPAHAAASGKAADWSDVPDDKGYAPMRDAIRRHVEQLLDELTARR
Ga0209480_104719991	3300027794	Wastewater Effluent	ERGLAARATFRGVDPQDALSVRAVAGLKEDGLTIPDGRPTAIAASDVTAATHIFAIGCALPASATKSGKASSWDDVPDDQGYGPMRDAIVRHVRALIDTLR
Ga0209382_103417333	3300027909	Populus Rhizosphere	SRICHRATFRGTLPQDDLSVRAVEGLKADGLAVPSGKPSPINDKDVAGATHIFANRLHAAGKALASGKSTDWSDVPDDHGYAPMRDAIGRHVKALPDDLGR
Ga0268265_121139101	3300028380	Switchgrass Rhizosphere	RFASGAARLELRGARIKDLYRATFRGTSPQEALSVRAVQGLTADGVAIPKGVPTSLGDADIKSATHIFAIGCALPAAATSSGKARDWSDVPDDKGYEAQRDAIVRHVKELLDDLQRRGR
Ga0307503_105694842	3300028802	Soil	FRGTAPQDDLSVRAVAGLKADGITVPSGKPAGITDADVAHATHIFAIGCTLPVNARASGKADDWSDVPDDQGYAPMRDAIVRHVKELLDRLASHGPAPR
Ga0311349_119511121	3300030294	Fen	PDRAIFRGTTPQEALSMSAVAGLRADGLAIPDGKPTAIAGTDISQATHIFAIGCVLPSAAVASGKSSDWSDVPDDQGYAATRDAILRHVKTLLDELQRQRKLITPSA
Ga0307499_102874772	3300031184	Soil	PYRATFRGTAPQAELSQRTVDALRADGVIVPDGKPTAIADADVERATHIFAIGCSLPDNARRSGKAADWSDVPEDRGYPAMRDAIVKHVVQLLDDLQTSRK
Ga0310887_105209381	3300031547	Soil	TSPQDDVSVRAVEGLKADGVAVPTGKPAAITDADVADATHIFAIGCTLPDAARRSGKAADWSDVPDDQGYGPMRDAIVRHVKLLLDELQR
Ga0310813_114269232	3300031716	Soil	TFRGTAPQDDLSVRAVAGLKADGLPIPSGKPAAVSEADVTAATHIFAIGCTLPAAAVRSGKAADWTDVPDDQGYAPMRDAIVRHVKALLDDLEKRRQ
Ga0307409_1003511361	3300031995	Rhizosphere	LPYRATFRGTAPQDDLSVRAVAGLQADGLSIPAGKPSAISDDDIAQATHIFAIGCNLPDKARRSGRADDWSDVPDDRGYGPMRDAIVRHVKELLDRLLAGSPARLRVQRTGPKHHLKSLNTQ
Ga0310902_110924902	3300032012	Soil	GVDPQDALSVRAVAGLKEDGLLIPEGRPTAIAAPDVSAATHVFAIGCVLPASATQSGKASSWDDVPDDQGYGPMRDAIVRHVRALIETLR
Ga0307470_107147841	3300032174	Hardwood Forest Soil	DLSVRAVAGLKADGVPVPSGRPAAISDRDVADATHIFAIGCTLPEKALRSGKAADWSDVPDDQGYAPMRDAIVRHVKQLLDELQK
Ga0307471_1016044281	3300032180	Hardwood Forest Soil	ATFRGTAPQENLSVRAVEGLKADGLAIPSGKPAAISDNDISSATHMFAIGCTLPDKARASGKAADWSDVPDDQGYGPMRDAIVRHVKALLDELAR
Ga0307471_1021635752	3300032180	Hardwood Forest Soil	FRGTAPQDELSVRAVEGLKADGLAIPSGKPAAISDADVSDATHIFAIGCTLPQRALLSGKAADWSDVPDDKGYGPMRDAIVRHVRQLLDELNR
Ga0310896_102054681	3300032211	Soil	GTSPQEALSVRAVQGLTADGVAIPKGVPTSLGDADIKSATHIFAIGCALPAAATSSGKARDWSDVPDDKGYEAQRDAIVRHVKELLDDLQRRGR
Ga0315271_115895452	3300032256	Sediment	VSALKGLREDGVEVPTGKPTAICAEDVVGATHIFAIGCTLPAQAQASGKASDWSDVPDDKGYGPMRDAIRRHVEFLLNELAKPR
Ga0315271_116454392	3300032256	Sediment	TFRGTSPQEALSTRAVDGLRADHVAVPDGRPTAIADGDVARATHIFAIGCTLPAAAIASGKAADWSDVPDDQGYPAMRDAIVRHVQTLLDDLQRRHK
Ga0310810_100634246	3300033412	Soil	ATFRGTNPQDELSVRAVAGLKEDGIAVPSGKPAAISDGDIANATHIFAIGCTLPDKAQRSGKADDWSDVPDDKGYGPMRDAIVRHVKELLDRLQTGRAD
Ga0247829_102959102	3300033550	Soil	VAIPQGAPTAIGEADIKTATHIFAIGCALPAAAVSSGKAKDWSDVPDDKGYEAQRDAIVRHVRELLDDLQRRSQYVAGLLPAAGSSLGSGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099384

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences