Metagenome Family F099535

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099535
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	67 residues
Representative Sequence	MSWRPHQTTSRRKIITLQEWAVYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR
Number of Associated Samples	62
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.14 %
% of genes near scaffold ends (potentially truncated)	24.27 %
% of genes from short scaffolds (< 2000 bps)	81.55 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.165 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (35.922 % of family members)
Environment Ontology (ENVO)	Unclassified (32.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (84.466 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.67% β-sheet: 0.00% Coil/Unstructured: 63.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01656	CbiA	12.62
PF01402	RHH_1	8.74
PF13614	AAA_31	4.85
PF10263	SprT-like	3.88
PF00140	Sigma70_r1_2	2.91
PF12728	HTH_17	1.94
PF04542	Sigma70_r2	1.94
PF13586	DDE_Tnp_1_2	0.97
PF13730	HTH_36	0.97
PF01609	DDE_Tnp_1	0.97
PF00534	Glycos_transf_1	0.97
PF11251	DUF3050	0.97
PF14076	DUF4258	0.97
PF00856	SET	0.97
PF00115	COX1	0.97
PF09140	MipZ	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	4.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.94
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.94
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.94
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.97
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.97
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.97
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.97
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.97
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
All Organisms	root	All Organisms	38.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
cellular organisms	root	All Organisms → cellular organisms	38.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.89 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.77 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.97 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.97 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6.80 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.97 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.97 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.85 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.97 %
Candidatus Poribacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria	0.97 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.97 %
Methanomicrobia	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
unclassified Candidatus Poribacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
Methanomicrobiales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	0.97 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	0.97 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.97 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
Acidiphilium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	0.97 %
unclassified Methanomicrobiales	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales	0.97 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	0.97 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → environmental samples	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %
Acidiphilium multivorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum	0.97 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
Acidiphilium multivorum AIU301	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum → Acidiphilium multivorum AIU301	0.97 %
methanogenic archaeon mixed culture ISO4-G1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → environmental samples → methanogenic archaeon mixed culture ISO4-G1	0.97 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	0.97 %
Streptomyces cinerochromogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cinerochromogenes	0.97 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	0.97 %
Acidiphilium multivorum AIU301	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum → Acidiphilium multivorum AIU301	0.97 %
methanogenic archaeon mixed culture ISO4-G1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → environmental samples → methanogenic archaeon mixed culture ISO4-G1	0.97 %
Streptomyces cinerochromogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cinerochromogenes	0.97 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.17 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Chloroflexi bacterium 13_1_20CM_50_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	1.94 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	0.97 %
Acidiphilium multivorum AIU301	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum → Acidiphilium multivorum AIU301	0.97 %
methanogenic archaeon mixed culture ISO4-G1	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → environmental samples → methanogenic archaeon mixed culture ISO4-G1	0.97 %
Streptomyces cinerochromogenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cinerochromogenes	0.97 %
Candidatus Poribacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	0.97 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.97 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886007\|SwRhRL2b_contig_2165533	Not Available	945	Open in IMG/M
2162886007\|SwRhRL2b_contig_811314	Not Available	1637	Open in IMG/M
3300000041\|ARcpr5oldR_c023987	Not Available	555	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100207371	Not Available	589	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100682622	Not Available	519	Open in IMG/M
3300000955\|JGI1027J12803_104850012	Not Available	716	Open in IMG/M
3300000955\|JGI1027J12803_105785355	Not Available	808	Open in IMG/M
3300001431\|F14TB_105135468	Not Available	724	Open in IMG/M
3300005179\|Ga0066684_10626439	Not Available	723	Open in IMG/M
3300005289\|Ga0065704_10097088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cinerochromogenes	2402	Open in IMG/M
3300005289\|Ga0065704_10191483	Not Available	1187	Open in IMG/M
3300005289\|Ga0065704_10216599	Not Available	1089	Open in IMG/M
3300005289\|Ga0065704_10307669	Not Available	874	Open in IMG/M
3300005289\|Ga0065704_10319376	Not Available	848	Open in IMG/M
3300005294\|Ga0065705_10108777	Not Available	5027	Open in IMG/M
3300005294\|Ga0065705_10135531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	2304	Open in IMG/M
3300005294\|Ga0065705_10196004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → Acidiphilium multivorum → Acidiphilium multivorum AIU301	1463	Open in IMG/M
3300005294\|Ga0065705_10432686	Not Available	845	Open in IMG/M
3300005294\|Ga0065705_10639103	Not Available	664	Open in IMG/M
3300005294\|Ga0065705_10718137	Not Available	636	Open in IMG/M
3300005294\|Ga0065705_10736464	Not Available	636	Open in IMG/M
3300005294\|Ga0065705_10747640	Not Available	627	Open in IMG/M
3300005294\|Ga0065705_10980600	Not Available	507	Open in IMG/M
3300005295\|Ga0065707_10418205	Not Available	833	Open in IMG/M
3300005295\|Ga0065707_10423077	Not Available	828	Open in IMG/M
3300005295\|Ga0065707_10574881	Not Available	705	Open in IMG/M
3300005295\|Ga0065707_10632863	Not Available	672	Open in IMG/M
3300005446\|Ga0066686_10360528	All Organisms → cellular organisms → Bacteria → Proteobacteria	992	Open in IMG/M
3300005471\|Ga0070698_100121959	All Organisms → cellular organisms → Bacteria → Proteobacteria	2565	Open in IMG/M
3300005937\|Ga0081455_10010026	All Organisms → cellular organisms → Bacteria	9678	Open in IMG/M
3300006049\|Ga0075417_10033748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	2135	Open in IMG/M
3300006049\|Ga0075417_10044728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1890	Open in IMG/M
3300006049\|Ga0075417_10753782	Not Available	502	Open in IMG/M
3300006058\|Ga0075432_10608442	Not Available	501	Open in IMG/M
3300006194\|Ga0075427_10012459	Not Available	1291	Open in IMG/M
3300006797\|Ga0066659_10446158	Not Available	1027	Open in IMG/M
3300006844\|Ga0075428_100019081	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	7583	Open in IMG/M
3300006844\|Ga0075428_100147054	All Organisms → cellular organisms → Bacteria	2561	Open in IMG/M
3300006844\|Ga0075428_100192708	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300006844\|Ga0075428_101542930	Not Available	695	Open in IMG/M
3300006844\|Ga0075428_101726566	Not Available	653	Open in IMG/M
3300006845\|Ga0075421_100051464	All Organisms → cellular organisms → Bacteria	5211	Open in IMG/M
3300006845\|Ga0075421_101208629	Not Available	842	Open in IMG/M
3300006846\|Ga0075430_100577083	Not Available	928	Open in IMG/M
3300006846\|Ga0075430_100798322	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300006852\|Ga0075433_10468666	Not Available	1110	Open in IMG/M
3300006880\|Ga0075429_100407455	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300006880\|Ga0075429_101623938	Not Available	562	Open in IMG/M
3300006904\|Ga0075424_101192255	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300006969\|Ga0075419_10327696	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300007255\|Ga0099791_10389941	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300007265\|Ga0099794_10132877	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1257	Open in IMG/M
3300009012\|Ga0066710_101534795	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300009094\|Ga0111539_11299689	All Organisms → cellular organisms → Bacteria → Proteobacteria	844	Open in IMG/M
3300009094\|Ga0111539_13244691	Not Available	524	Open in IMG/M
3300009100\|Ga0075418_12865164	Not Available	526	Open in IMG/M
3300009137\|Ga0066709_101839681	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300009147\|Ga0114129_10868852	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → environmental samples → methanogenic archaeon mixed culture ISO4-G1	1145	Open in IMG/M
3300009156\|Ga0111538_10233466	Not Available	2330	Open in IMG/M
3300009162\|Ga0075423_10438943	Not Available	1371	Open in IMG/M
3300009162\|Ga0075423_10767648	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300009162\|Ga0075423_13068499	Not Available	512	Open in IMG/M
3300010041\|Ga0126312_10662398	Not Available	752	Open in IMG/M
3300010041\|Ga0126312_11067065	Not Available	592	Open in IMG/M
3300010322\|Ga0134084_10142517	Not Available	800	Open in IMG/M
3300010333\|Ga0134080_10234510	Not Available	805	Open in IMG/M
3300012096\|Ga0137389_10138461	Not Available	1981	Open in IMG/M
3300012199\|Ga0137383_10760074	Not Available	708	Open in IMG/M
3300012199\|Ga0137383_10917252	Not Available	640	Open in IMG/M
3300012201\|Ga0137365_10089609	All Organisms → cellular organisms → Bacteria → Proteobacteria	2317	Open in IMG/M
3300012201\|Ga0137365_10103371	Not Available	2144	Open in IMG/M
3300012203\|Ga0137399_11462719	Not Available	570	Open in IMG/M
3300012204\|Ga0137374_10177148	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300012204\|Ga0137374_10410651	Not Available	1073	Open in IMG/M
3300012205\|Ga0137362_10745355	Not Available	841	Open in IMG/M
3300012349\|Ga0137387_10189162	Not Available	1476	Open in IMG/M
3300012349\|Ga0137387_10486419	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300012351\|Ga0137386_11168974	Not Available	540	Open in IMG/M
3300012356\|Ga0137371_10146717	Not Available	1849	Open in IMG/M
3300012358\|Ga0137368_10131899	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300012359\|Ga0137385_10181316	Not Available	1844	Open in IMG/M
3300012360\|Ga0137375_11079474	Not Available	625	Open in IMG/M
3300012532\|Ga0137373_10152185	Not Available	1951	Open in IMG/M
3300012685\|Ga0137397_11040050	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300012922\|Ga0137394_10985318	Not Available	701	Open in IMG/M
3300012923\|Ga0137359_10754335	Not Available	845	Open in IMG/M
3300012930\|Ga0137407_10484693	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300013306\|Ga0163162_11195605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	863	Open in IMG/M
3300015264\|Ga0137403_10038859	All Organisms → cellular organisms → Bacteria	4979	Open in IMG/M
3300015371\|Ga0132258_10097543	All Organisms → cellular organisms → Bacteria	6911	Open in IMG/M
3300018433\|Ga0066667_10518482	All Organisms → cellular organisms → Bacteria → Proteobacteria	985	Open in IMG/M
3300027873\|Ga0209814_10033752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_50_12	2114	Open in IMG/M
3300027873\|Ga0209814_10051521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1718	Open in IMG/M
3300027880\|Ga0209481_10100707	Not Available	1395	Open in IMG/M
3300027880\|Ga0209481_10121588	Not Available	1273	Open in IMG/M
3300027880\|Ga0209481_10280764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	842	Open in IMG/M
3300027907\|Ga0207428_10380804	Not Available	1035	Open in IMG/M
3300027909\|Ga0209382_10039762	All Organisms → cellular organisms → Bacteria	5635	Open in IMG/M
3300027909\|Ga0209382_10196358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2315	Open in IMG/M
3300027909\|Ga0209382_10203317	Not Available	2269	Open in IMG/M
3300027909\|Ga0209382_11513978	All Organisms → cellular organisms → Bacteria → Proteobacteria	668	Open in IMG/M
3300028381\|Ga0268264_10611428	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300032159\|Ga0268251_10520886	Not Available	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.46%
Host-Associated	Host-Associated	48.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.46%
Plants	Host-Associated → Plants	48.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.65%
Phylloplane	Host-Associated → Plants → Phylloplane	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	35.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.74%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Loam	Environmental → Terrestrial → Soil → Loam	1.94%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	35.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.97%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	35.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.30%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	12.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	6.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0559.00004400	2162886007	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFTFLQSRI
SwRhRL2b_0331.00003730	2162886007	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFIFLQSRL
ARcpr5oldR_0239872	3300000041	Arabidopsis Rhizosphere	MCMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
INPhiseqgaiiFebDRAFT_1002073711	3300000364	Soil	MSWRPHKITSQRKIITVQEWADFIGVSKNTILARLKKYQLLYTYDPHDIYSVLNFFKFLLQKRKYPLPPKK*
INPhiseqgaiiFebDRAFT_1006826222	3300000364	Soil	EGKVISMSWHAHQTMSRRKIITVQEWADFIGVSKNTILARLKKYQLLYKYDPHDIYSVLNFFKFLQHRKLPQSQQT*
JGI1027J12803_1048500122	3300000955	Soil	MSWHAHKTTSQRKIITVQEWAAFIGVSKNTILAWMKKYKVAYPKVTYDPHDIYSVLNFFKFLQSRL*
JGI1027J12803_1057853551	3300000955	Soil	IFMSWRKHQTKSQRKIITIQEFANYFSVSKNTMLARLKKYRLLYSYDPHDIYSVFDFFKFLLGKK*
F14TB_1051354682	3300001431	Soil	MKNTLGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTILAHLKKYRLLYEYDPHDIYSVLDFSKFLQKR*
Ga0066684_106264391	3300005179	Soil	MSWKPHNPISRRKIITVQEWASYMGVSKNTILARLKKYQLLYTYDPHDIYSVLNFFKFLQSRKQPKPQKT*
Ga0065704_100970883	3300005289	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFIFLQSRL*
Ga0065704_101914833	3300005289	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILARLKKYQLLYTYDPHDIYSVLNFFKFLQSR*
Ga0065704_102165993	3300005289	Switchgrass Rhizosphere	MSWRPHKTTSQRKIITIQEWANFMGVSKNTIIARLKKYRLLYEYDPHDIYSVLDFFKFLQKR*
Ga0065704_103076692	3300005289	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFIFLQSRI*
Ga0065704_103193761	3300005289	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFTFLQSRI*
Ga0065705_101087775	3300005294	Switchgrass Rhizosphere	VLEGKVKSMSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFTFLQSRI*
Ga0065705_101355314	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGASKNTILAWMKKYKVAYPKVAYDPHDIYSVLKFFTFLQSRI*
Ga0065705_101960042	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFMDVSKNTILARLKKYQLLYTYDPHDIYSVLNFFKFLQSRKQPRPQKP*
Ga0065705_104326861	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRTIITVQEWADFIGVSKNTILARLKRYQLLYAYDPHDIYSVLNFFKFLQSRKQPKPQKI*
Ga0065705_106391032	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFMDVSKNTILARLKKYQLLYPYDPHDIYSVLNFFKFLQSRKQPKQQKT*
Ga0065705_107181372	3300005294	Switchgrass Rhizosphere	MSWHAHKTISQRKIITVQEWADFIGVSKNTILARLKKYRLLYKYDPHDIYSVLNFFNFLQKR*
Ga0065705_107364642	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFMGVSKNTILARLKKYQLLYTYDPHDIYSVLNFFKFLQSR*
Ga0065705_107476401	3300005294	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVTYDPHDIYSVLNFFKFLQSRL*
Ga0065705_109806002	3300005294	Switchgrass Rhizosphere	MLEGKITSMSWRPHKITSRRKIITVQEWADYIGVSKNTILAWRKKYKVAYPKASYDPHDIYSVLVTAQAY
Ga0065707_104182053	3300005295	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFIGVSKNTILARLKRYQLLYAYDPHDIYSVLNFFKFLQSRKQPKPQKI
Ga0065707_104230772	3300005295	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFKFLQTR*
Ga0065707_105748811	3300005295	Switchgrass Rhizosphere	SQRKIITVQEWADFTGASKNTILAWMKKYKVAYPKVAYDPHDIYSVLKFFTFLQSRI*
Ga0065707_106328631	3300005295	Switchgrass Rhizosphere	NVLEGKVKSMSWHAHKTTSQRKIITVQEWADFMDVSKNTILARLKRYQLLYTYDPHGIYSVLNFFRFLQSRKQPQPQKP*
Ga0066686_103605282	3300005446	Soil	MCMSWRPHQTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLNFFKFLQSR*
Ga0070698_1001219595	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	DVLEGKVISMSWRAHKTKSQRKIITVQEWADYIGVSKNTILARLKKYRLLYKYDPRDIYSVLDFFTFLLQR*
Ga0081455_100100263	3300005937	Tabebuia Heterophylla Rhizosphere	MSWRPHKTKTARKIITLQEWANYIGVSKNTIIARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
Ga0075417_100337482	3300006049	Populus Rhizosphere	MSWRPHQTTSRRKIITLQEWADYMGVSKNTIIARLKKYRLLYEYDPHDIYSVLDFSKFLLKR*
Ga0075417_100447283	3300006049	Populus Rhizosphere	MSMSWRPHKTKTARKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR*
Ga0075417_107537822	3300006049	Populus Rhizosphere	MSWRAHKTTSQRKIITIQEWADFIGVSKNTILARLKKYQLLTYDPHDIYSVLN
Ga0075432_106084422	3300006058	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLAHLKKYRLLYEYDPRDIYSVLNFSKFLQKR*
Ga0075427_100124592	3300006194	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRNIYSVLNFSKFLQKR*
Ga0066659_104461581	3300006797	Soil	MSMSWRPHQTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLN
Ga0075428_1000190819	3300006844	Populus Rhizosphere	MSWRAHKTTSQRKIITIQEWADFIGVSKNTILARLKKYQLLTYDPHDIYSVLNFFKFLQER*
Ga0075428_1001470544	3300006844	Populus Rhizosphere	MKNALGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTILAHLKKYRLLYEYDPHDIYSVLDFSKFLQKR*
Ga0075428_1001927083	3300006844	Populus Rhizosphere	MFISWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFKFLLQR*
Ga0075428_1015429301	3300006844	Populus Rhizosphere	MSWRAHQTRSNRKLITIQEWADYIGVSKYTIINKLKKYTLVYEYDPRDIYSVLDFFTFLL
Ga0075428_1017265661	3300006844	Populus Rhizosphere	MSWRPHKTTSQRKIITVQEWADYRGVSKNTILARLKKYRLLYKYDPRDIYSVLDFFKFLLQWHSPKR*
Ga0075421_1000514643	3300006845	Populus Rhizosphere	VLEGKVVCMSWRPHQTTSRRKIITLQEWAVYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
Ga0075421_1012086292	3300006845	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRDIYSVLNFSKFLQKR*
Ga0075430_1005770833	3300006846	Populus Rhizosphere	MLEGKVMSMSWRPHKTKTARKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR*
Ga0075430_1007983223	3300006846	Populus Rhizosphere	SDYNVLEGKVVCMSWRPHQTTSRRKIITLQEWAVYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
Ga0075433_104686661	3300006852	Populus Rhizosphere	MKNVLGGTIGVGKRPHSTKSRRKIITIQEWADYLDVNRNTVLAHLKKYRLLYEYDPHDIYSVLD
Ga0075429_1004074551	3300006880	Populus Rhizosphere	MSWRPHQTTSRRKIITLQEWAVYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
Ga0075429_1016239382	3300006880	Populus Rhizosphere	MSWHAHQTMSRRKIITVQEWADFIGVSKNTILARLKKYQLLYKYDPHDIYSVLNFFKFLQHRKLPQSQQT*
Ga0075424_1011922552	3300006904	Populus Rhizosphere	MKNALGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDARDIYSVLNFSKFLQKR*
Ga0075419_103276961	3300006969	Populus Rhizosphere	MKNALGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTILAHLKKYRLLYEYDPHDIYSVLDFFKFLQKR*
Ga0099791_103899412	3300007255	Vadose Zone Soil	MSMSWRPLKTTSRRKIITLQEWADYIGVSKNTILAWSKKYKVAYPKAKYDPHDIYSVLNFFKFLQSR*
Ga0099794_101328772	3300007265	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVFNFFKFLLQR*
Ga0066710_1015347951	3300009012	Grasslands Soil	MLEGKVMCMSWRPHQTTSRRKIITLQEWANYIGVSKNTILARLKKYRLLYKYDPRDIYSVLDFFTFLLKR
Ga0111539_112996892	3300009094	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTVLAHLKKYRLLYEYDPHDIYSVLDFSKFLQKR*
Ga0111539_132446912	3300009094	Populus Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYQLLYAYDPHDIYSILNFF
Ga0075418_128651641	3300009100	Populus Rhizosphere	TIGVGKRPHSTKSRRKIITLQEWADYLDVNRNTILAHLKKYRLLYEYDPHDIYSVLDFSKFLQKR*
Ga0066709_1018396811	3300009137	Grasslands Soil	NHLSDYNVLEGKVMCMSWRPHKTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLNFFKFLQSR*
Ga0114129_108688521	3300009147	Populus Rhizosphere	VGKKPHSTKSHRKIITLQEWADYIGVSKNTIIAHLKKYRLLYEYDPHDIYSVLNFFEFLRQR*
Ga0111538_102334663	3300009156	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRDIYSVLNFSKFLQTR*
Ga0075423_104389432	3300009162	Populus Rhizosphere	MKNILGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRDIYSVLNFSKFLQKR*
Ga0075423_107676481	3300009162	Populus Rhizosphere	NHLSDYNMLEGKVMSMSWRPHKTKTARKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR*
Ga0075423_130684992	3300009162	Populus Rhizosphere	MSWHAHKTTSQRKIITVQEWADFIGVSKNTILAWMKKYKVAYPKVAYDPHDIYSVLNFFIFLQSRI*
Ga0126312_106623981	3300010041	Serpentine Soil	GKHVSDYHVLEGKVISMSWHAHKTTSQRKIITLQEWAAYTGVSKNTILARLKKYQLLFEYDPHDIYSVLNFFTFLQSR*
Ga0126312_110670651	3300010041	Serpentine Soil	MSWHAHKTTSQRKMITVQEWAAYTGVSKNTILARLKKYQLLYKYDPHDIYSV
Ga0134084_101425172	3300010322	Grasslands Soil	MSMSWRHHQTTSRRKIITVQEWAAYIGVSKNTIIARLKKYRLLYEYDPRDIYSVLDFFTFLLKR*
Ga0134080_102345101	3300010333	Grasslands Soil	MSWRPHQTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLNFFKFLQSR*
Ga0137389_101384611	3300012096	Vadose Zone Soil	MCMSWRPHQTTSRRKTITLQEGDYIGVSKNTILARLKKYQLLYEYDPRDIYSVLNFFKFLQKR*
Ga0137383_107600742	3300012199	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYKYDPRDIYSVLD
Ga0137383_109172522	3300012199	Vadose Zone Soil	MSWRPHKTTSRRKIITLQEWADYIGVSKNTILAWRKKYKVAYPKASYDPHDIYSVLNFFKFLQSR*
Ga0137365_100896092	3300012201	Vadose Zone Soil	MSWRPHQTTSRRKIITIQEWAHYIGVSKNTILARLKKYRLLYKYDPRDIYSVLDFFTFLLKR*
Ga0137365_101033713	3300012201	Vadose Zone Soil	MSWHPHKTTSQRKIITVQEWADFTGVSKNTILARLKKYQLLYEYDPHDIYSVLNFFTFLLHR*
Ga0137399_114627192	3300012203	Vadose Zone Soil	MLEGKVTPMSWRPHKTTSRRKIITLQEWADFIGVSKNTILAWSKKYKVAYPKVPYDPHDIYSVLNFFKFLQSR*
Ga0137374_101771483	3300012204	Vadose Zone Soil	VADAMIEAYHHKIKSQRKIITLQEWANYIGVSRNTIHARLKKYQLLYEYDPRDIYSVLNFFKFLQQR*
Ga0137374_104106512	3300012204	Vadose Zone Soil	MSWRPHQTTSRRKIITLQEWADYIGVSKNTILARLKKYQLLYEYDPHDIYSVLNFFTFLLHR*
Ga0137362_107453552	3300012205	Vadose Zone Soil	MSWHPHKTTSQRKIITVQEWADYIGVSKNTILAWMKKYKVAYPKAKYDPHDIYSVLDFFKFLQSRLLPSFKM*
Ga0137387_101891623	3300012349	Vadose Zone Soil	MSWHPHKTTSQRKIITVQEWADYIGVSKNTILARLKKYQLLYEYDPHDIYSVLNFFTFLLHR*
Ga0137387_104864192	3300012349	Vadose Zone Soil	MSMSWRPHKTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLNFFKFLQSR*
Ga0137386_111689741	3300012351	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVFNFLKFLLQR
Ga0137371_101467173	3300012356	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIHEWANYIGVSKNTILARLKKYRLLYEYDPRDIYSVLNFFKFLQSR*
Ga0137368_101318993	3300012358	Vadose Zone Soil	MIEAYHHKIKSQRKIITLQEWANYIGVSRNTIHARLKKYQLLYEYDPRDIYSVLNFFKFLQQR*
Ga0137385_101813162	3300012359	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFKFLLKR*
Ga0137375_110794742	3300012360	Vadose Zone Soil	MTMSWRPHQTTSRRKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFKFLLKR*
Ga0137373_101521851	3300012532	Vadose Zone Soil	VADAMIEAYHHKIKSQRKIITLQEWANYIGVSRNTIHARLKKYQLLYEYDPRDIYSVLNFFKFLQQL*
Ga0137397_110400502	3300012685	Vadose Zone Soil	VLEGKIISMSWRPHKTISRRKIITVQEWAGYIGLSKNTVLARLKKYRLLYEYDPRDIYSVLDFFKFLLKR*
Ga0137394_109853182	3300012922	Vadose Zone Soil	VLERKIKSMSWHPHKTTSQRKIITVQEWADYIGVSKNTMLTWMKKYQLLYEYDPHDIFSVLNFFTFLLHR*
Ga0137359_107543351	3300012923	Vadose Zone Soil	MSWRPHQTTSRRKIITVQEWANYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDF
Ga0137407_104846931	3300012930	Vadose Zone Soil	TSRRKIITLQEWAYYIGVSKNTILARLKKYRLLYKYDPHDIYSVLDFFTFLLQR*
Ga0163162_111956053	3300013306	Switchgrass Rhizosphere	MSWHAHKTTSQRKIITVQEWADFTGVSKNTILAWMKKYKVAYPKVAYNPHDIYSVLNFFIFLQSRI*
Ga0137403_100388597	3300015264	Vadose Zone Soil	MSMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVFNFLKFLLQR*
Ga0132258_100975435	3300015371	Arabidopsis Rhizosphere	MLEGKVMCMSWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR*
Ga0066667_105184822	3300018433	Grasslands Soil	MLEGKVMCMSWRPHQTTSRRKIITLQEWADYIGVSKNTILAWSKKYKAAYPKVPYDPHDIYSVLNFFKFLQSR
Ga0209814_100337523	3300027873	Populus Rhizosphere	MSWRPHQTTSRRKIITLQEWADYMGVSKNTIIARLKKYRLLYEYDPHDIYSVLDFSKFLLKR
Ga0209814_100515213	3300027873	Populus Rhizosphere	MLEGKVMSMSWRPHKTKTARKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR
Ga0209481_101007073	3300027880	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRNIYSVLNFSKFLQKR
Ga0209481_101215882	3300027880	Populus Rhizosphere	MSWRAHKTTSQRKIITIQEWADFIGVSKNTILARLKKYQLLTYDPHDIYSVLNFFKFLQE
Ga0209481_102807642	3300027880	Populus Rhizosphere	MFISWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR
Ga0207428_103808043	3300027907	Populus Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLARLKKYRLLYEYDPRDIYSVLNFSKFLQKR
Ga0209382_1003976212	3300027909	Populus Rhizosphere	VLEGKVVCMSWRPHQTTSRRKIITLQEWAVYIGVSKNTILARLKKYRLLYEYDPHDIYSVLDFFKFLLKR
Ga0209382_101963583	3300027909	Populus Rhizosphere	MSMSWRPHKTKTARKIITLQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFRFLQKR
Ga0209382_102033172	3300027909	Populus Rhizosphere	MFISWRPHQTTSRRKIITIQEWADYIGVSKNTILARLKKYRLLYEYDPRDIYSVLDFFKFLLQR
Ga0209382_115139782	3300027909	Populus Rhizosphere	MKNALGGTIGVGKKPHSTKSHRKIITLQEWADYLGVNRNTILAHLKKYRLLYEYDPHDIYSVLDFSKFLQKR
Ga0268264_106114282	3300028381	Switchgrass Rhizosphere	MKNVLGGTIGVGKKPHSTKSRRKIITIQEWADYLGVNRNTVLARLKKYRLLYEYDPRDIYSMLNFSKF
Ga0268251_105208862	3300032159	Agave	HYSYQYCIVTLTMKNALGGTIGVGKKPHSTKSRRKIITLQEWADYLGVNRNTVLAHLKKYRLLYEYDPHDIYSALDFSKFLQKQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099535

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences