Metagenome / Metatranscriptome Family F099568

Basic Information
Family ID	F099568
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	39 residues
Representative Sequence	AMRADPAFQEALKSEQANKLVEKIDSTYMRPADFSPMK
Number of Associated Samples	94
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.77 %
% of genes near scaffold ends (potentially truncated)	89.32 %
% of genes from short scaffolds (< 2000 bps)	89.32 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Most Common Taxonomy
Group	Bacteria (80.583 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (12.621 % of family members)
Environment Ontology (ENVO)	Unclassified (32.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.282 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.76% β-sheet: 0.00% Coil/Unstructured: 74.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12704	MacB_PCD	5.83
PF14329	DUF4386	4.85
PF03551	PadR	3.88
PF05163	DinB	2.91
PF12867	DinB_2	2.91
PF00578	AhpC-TSA	1.94
PF07045	DUF1330	1.94
PF07978	NIPSNAP	1.94
PF02517	Rce1-like	1.94
PF00072	Response_reg	0.97
PF00756	Esterase	0.97
PF06441	EHN	0.97
PF02812	ELFV_dehydrog_N	0.97
PF02567	PhzC-PhzF	0.97
PF01042	Ribonuc_L-PSP	0.97
PF16576	HlyD_D23	0.97
PF00118	Cpn60_TCP1	0.97
PF00535	Glycos_transf_2	0.97
PF01402	RHH_1	0.97
PF02371	Transposase_20	0.97
PF04191	PEMT	0.97
PF08818	DUF1801	0.97
PF01341	Glyco_hydro_6	0.97
PF04389	Peptidase_M28	0.97
PF13533	Biotin_lipoyl_2	0.97
PF12681	Glyoxalase_2	0.97
PF13649	Methyltransf_25	0.97
PF07883	Cupin_2	0.97
PF00857	Isochorismatase	0.97
PF13437	HlyD_3	0.97
PF16483	Glyco_hydro_64	0.97
PF01047	MarR	0.97
PF13282	DUF4070	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	3.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	3.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	3.88
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.91
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	1.94
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.94
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.97
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	0.97
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	0.97
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.97
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.97
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.97
COG5297	Cellulase/cellobiase CelA1	Carbohydrate transport and metabolism [G]	0.97
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.58 %
Unclassified	root	N/A	18.45 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.97 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	32.04 %
Unclassified	root	N/A	18.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.97 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.50 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.68 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.68 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.97 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.97 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.68 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.85 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.85 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	1.94 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.97 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.85 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.97 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	0.97 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.97 %
Silvibacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium dinghuense	0.97 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.97 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.50 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.85 %
Granulicella sp. S156	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	0.97 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.97 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.97 %
Silvibacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium dinghuense	0.97 %
Acidobacteriaceae bacterium KBS 89	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	0.97 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.97 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.97 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_104969265	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10084409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300001593\|JGI12635J15846_10225485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1220	Open in IMG/M
3300002245\|JGIcombinedJ26739_100011528	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7230	Open in IMG/M
3300004082\|Ga0062384_100644393	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300004635\|Ga0062388_102398055	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300005541\|Ga0070733_10931679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300005542\|Ga0070732_10025776	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	3331	Open in IMG/M
3300005591\|Ga0070761_10131202	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300005591\|Ga0070761_10806849	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300005610\|Ga0070763_10558037	Not Available	660	Open in IMG/M
3300005712\|Ga0070764_10198164	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300005712\|Ga0070764_10669550	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300005764\|Ga0066903_107482808	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300006162\|Ga0075030_101165394	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300006176\|Ga0070765_101328386	Not Available	678	Open in IMG/M
3300006176\|Ga0070765_102130411	Not Available	524	Open in IMG/M
3300009088\|Ga0099830_10516952	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300009521\|Ga0116222_1522054	Not Available	520	Open in IMG/M
3300009624\|Ga0116105_1235371	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300009645\|Ga0116106_1287459	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300009665\|Ga0116135_1454328	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300009665\|Ga0116135_1459241	Not Available	524	Open in IMG/M
3300009698\|Ga0116216_10651708	Not Available	633	Open in IMG/M
3300009759\|Ga0116101_1004854	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300009762\|Ga0116130_1080577	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300009792\|Ga0126374_11764694	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010048\|Ga0126373_11466595	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300010343\|Ga0074044_10493689	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300010358\|Ga0126370_11880986	Not Available	581	Open in IMG/M
3300010359\|Ga0126376_12080012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300010361\|Ga0126378_13259941	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	516	Open in IMG/M
3300010376\|Ga0126381_100795404	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1358	Open in IMG/M
3300012357\|Ga0137384_10240413	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300012930\|Ga0137407_11997863	Not Available	553	Open in IMG/M
3300014165\|Ga0181523_10367788	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	804	Open in IMG/M
3300014168\|Ga0181534_10100284	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1450	Open in IMG/M
3300014199\|Ga0181535_10578887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300014201\|Ga0181537_11136640	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300014489\|Ga0182018_10383241	Not Available	754	Open in IMG/M
3300014495\|Ga0182015_10781758	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300014501\|Ga0182024_10077217	All Organisms → cellular organisms → Bacteria	4990	Open in IMG/M
3300014657\|Ga0181522_10263008	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300015241\|Ga0137418_11132182	Not Available	555	Open in IMG/M
3300015371\|Ga0132258_10675532	All Organisms → cellular organisms → Bacteria	2599	Open in IMG/M
3300017822\|Ga0187802_10182245	Not Available	806	Open in IMG/M
3300017822\|Ga0187802_10343159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	586	Open in IMG/M
3300017931\|Ga0187877_1362389	Not Available	549	Open in IMG/M
3300017972\|Ga0187781_10156275	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300018030\|Ga0187869_10440385	Not Available	620	Open in IMG/M
3300018034\|Ga0187863_10635219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300018035\|Ga0187875_10072226	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300018040\|Ga0187862_10120496	All Organisms → cellular organisms → Bacteria	1797	Open in IMG/M
3300018047\|Ga0187859_10893528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300018062\|Ga0187784_11166099	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300020580\|Ga0210403_10214487	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300021170\|Ga0210400_11375216	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300021403\|Ga0210397_10194126	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 89	1447	Open in IMG/M
3300021420\|Ga0210394_11645905	Not Available	539	Open in IMG/M
3300021560\|Ga0126371_11211501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300021560\|Ga0126371_12534680	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	621	Open in IMG/M
3300022732\|Ga0224569_106530	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300025414\|Ga0208935_1043859	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300026817\|Ga0207775_109241	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	767	Open in IMG/M
3300027590\|Ga0209116_1023127	All Organisms → cellular organisms → Bacteria → Acidobacteria	1292	Open in IMG/M
3300027619\|Ga0209330_1015828	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	1685	Open in IMG/M
3300027684\|Ga0209626_1054488	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300027692\|Ga0209530_1233663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300027829\|Ga0209773_10064741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1487	Open in IMG/M
3300027842\|Ga0209580_10103141	Not Available	1380	Open in IMG/M
3300027853\|Ga0209274_10292595	All Organisms → cellular organisms → Bacteria → Acidobacteria	836	Open in IMG/M
3300027855\|Ga0209693_10527840	Not Available	563	Open in IMG/M
3300027879\|Ga0209169_10167730	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300027884\|Ga0209275_10354521	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300027895\|Ga0209624_10476761	Not Available	831	Open in IMG/M
3300028016\|Ga0265354_1009670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	924	Open in IMG/M
3300028572\|Ga0302152_10039532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1475	Open in IMG/M
3300028747\|Ga0302219_10258438	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300028806\|Ga0302221_10048526	All Organisms → cellular organisms → Bacteria	1953	Open in IMG/M
3300029701\|Ga0222748_1128802	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300029910\|Ga0311369_11164548	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300029914\|Ga0311359_10355082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium dinghuense	1180	Open in IMG/M
3300029914\|Ga0311359_10439985	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300029943\|Ga0311340_10155862	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300029951\|Ga0311371_12129401	Not Available	589	Open in IMG/M
3300029999\|Ga0311339_10050973	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5557	Open in IMG/M
3300029999\|Ga0311339_10076949	All Organisms → cellular organisms → Bacteria	4260	Open in IMG/M
3300029999\|Ga0311339_11895284	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300030053\|Ga0302177_10107121	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1612	Open in IMG/M
3300030054\|Ga0302182_10125020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1121	Open in IMG/M
3300030058\|Ga0302179_10012034	All Organisms → cellular organisms → Bacteria	4433	Open in IMG/M
3300030518\|Ga0302275_10644485	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300030617\|Ga0311356_10845585	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031028\|Ga0302180_10004718	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	10072	Open in IMG/M
3300031258\|Ga0302318_10184781	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	996	Open in IMG/M
3300031753\|Ga0307477_11134925	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	509	Open in IMG/M
3300031754\|Ga0307475_10753618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300031942\|Ga0310916_11237032	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	616	Open in IMG/M
3300031962\|Ga0307479_10056218	All Organisms → cellular organisms → Bacteria	3790	Open in IMG/M
3300032001\|Ga0306922_11112973	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	809	Open in IMG/M
3300032783\|Ga0335079_10539119	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300032895\|Ga0335074_11189311	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300034163\|Ga0370515_0313527	Not Available	663	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.79%
Aquatic	Environmental → Aquatic	23.30%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.31%
Freshwater	Environmental → Aquatic → Freshwater	22.33%
Peat	Environmental → Terrestrial → Peat	17.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Sediment	0.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.18%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.33%
Loam	Environmental → Terrestrial → Soil → Loam	20.39%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	17.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.42%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	17.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.68%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.83%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.62%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	10.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.85%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.97%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.97%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028016	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1	Host-Associated	Open in IMG/M
3300028572	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030518	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099568

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1049692652	3300000559	Soil	ADPEFQALVKSEQVDRLVEKIDTTYMHSTDFSPMK*
AF_2010_repII_A001DRAFT_100844091	3300000793	Forest Soil	LADPEVEEAIKSEEANKLVEKIDRMYMRSTDFSPMK*
JGI12635J15846_102254851	3300001593	Forest Soil	EMRADPATQELLKSEQADKLLEKVDSTYMRSTDFSPMK*
JGIcombinedJ26739_1000115284	3300002245	Forest Soil	MLALSGPDPEFQEVIKSEQTNKLVEKIDSTYMRPTGFSPLK*
Ga0062384_1006443931	3300004082	Bog Forest Soil	WDAMFADPAFQEMMKSEQAGKLVDKVDVTYMRPTDFSAMK*
Ga0062388_1023980551	3300004635	Bog Forest Soil	EEAKKNWDAMRADPATQEMLKSEQADKLVEKVDSTYMRPEDFSPMK*
Ga0070733_109316792	3300005541	Surface Soil	EEAKKNWDAMRADPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK*
Ga0070732_100257763	3300005542	Surface Soil	ADPEVREAIKSEEANKLVEKIDRTYMRPTDFSPK*
Ga0070761_101312023	3300005591	Soil	DPEFQEVIKSEQTNKLVEKIDSTYMRPTDYSPLK*
Ga0070761_108068491	3300005591	Soil	AFRADPEFQEVLKAEQANKTVEKIDATYMRPTDFSPMK*
Ga0070763_105580371	3300005610	Soil	WEAMFNDPGFAEIVKDEAAEKLVEGVDSTYMDPTDFSPMN*
Ga0070764_101981641	3300005712	Soil	KKNWDAMMADPEFQDVIKAEQAEKLVEKVDVTYMRATDFSLIK*
Ga0070764_106695501	3300005712	Soil	DPAFQEVLKSEQKERLLERADTTYMQPEDFSPMK*
Ga0066903_1074828081	3300005764	Tropical Forest Soil	AMLADPEVQEAIKSEQANKLVEKIDRTYMRSTDFSPMK*
Ga0075030_1011653942	3300006162	Watersheds	DPEVQEAIKSEQGANKLVEKINRTYMRSPDFSPMK*
Ga0070765_1013283861	3300006176	Soil	EEEKKNWDAMVADPEFQQDVIKAEQTEKTVEKVDVSHMSPTDFSAIQ*
Ga0070765_1021304112	3300006176	Soil	DPEFQEVIKSGPANKLVEQTDSTYMRPTDFSPLK*
Ga0099830_105169521	3300009088	Vadose Zone Soil	DPAFQEMVKSEQTEKLIEKVDSTYMHPTDFSPMK*
Ga0116222_15220541	3300009521	Peatlands Soil	MRADPATQEMLKSEEADKLLEKVDSTYMRPEDFSPMK*
Ga0116105_12353712	3300009624	Peatland	ADPKTQEAIKAEEAEKRVEKVDVTYMRPTDFSPMK*
Ga0116106_12874591	3300009645	Peatland	KKNWDAMRADPDFQELIRENSEQASKLVEKVDVLYMRPTDFSPMK*
Ga0116135_14543281	3300009665	Peatland	NWDAMRADPDVQELIKSEQADKLVEKIDSTYMRPEDFSPMK*
Ga0116135_14592411	3300009665	Peatland	DAMLADPEVQEAIKSEEANKLVEKIDRTYMRPEDFSPMK*
Ga0116216_106517081	3300009698	Peatlands Soil	WDAMRADPGFQEMLKSEQTDKLVEKVDTTYMHPTDFSPMK*
Ga0116101_10048543	3300009759	Peatland	WDAMRADPAVQEMIKSEKADNLVEKIDSTYMRPEDFSPMK*
Ga0116130_10805771	3300009762	Peatland	KKNWDAMLPDPEVLEAIKSEEANKLVEKIDRMYMRSTDFSPMK*
Ga0126374_117646941	3300009792	Tropical Forest Soil	KNWDAMLADPETQEAIKSEEASKPVEKIDRTYMRSTDFSPMK*
Ga0126373_114665953	3300010048	Tropical Forest Soil	ADPEVQEAIKSEQANKLVEKIDRTYMRSTDFSPMK*
Ga0074044_104936893	3300010343	Bog Forest Soil	DAMLADPEVQEAIKSEEANKLVEKIDRVYMRSTDFSPMK*
Ga0126370_118809862	3300010358	Tropical Forest Soil	LADPEVQAAIKSEEADKLVEKIDRAYMRPTDFSPK*
Ga0126376_120800123	3300010359	Tropical Forest Soil	DAMLADPEVQEAIKSEQANKLVEKIDRTYMPPTDFSPMK*
Ga0126378_132599411	3300010361	Tropical Forest Soil	ADPEVQEAIKSEQTNKLVEKIDRTYMRSTDFSPLK*
Ga0126381_1007954044	3300010376	Tropical Forest Soil	MLADPEVQEAIKSEEANKLVEKIDRTYMRSTDFSPMK*
Ga0137384_102404132	3300012357	Vadose Zone Soil	MRADPVTQEMIKSEQADKLVEKIDSTYVRPEDFSPMK*
Ga0137407_119978631	3300012930	Vadose Zone Soil	EEAKKNWDAMRADPDFQELIRKNSEPATKLVEKVDVTYMRPTDFSPMK*
Ga0181523_103677883	3300014165	Bog	VADPEFQDVIKSEQANKLVEKEDSTYMHPADFSPMK*
Ga0181534_101002842	3300014168	Bog	AKKNWDAMFADPGFAEVINSEKAEKTVESVDPTYMRPTDFSPAK*
Ga0181535_105788872	3300014199	Bog	ADPATQELLKSEQADKLLEKVDSTYMRPTDFSPMK*
Ga0181537_111366402	3300014201	Bog	EEAKKNWDGFRHDPAFQEEIKSEQANKLVEKIDSTYMSPTDFSPLK*
Ga0182018_103832413	3300014489	Palsa	AEMFADPAFQSMMKEEQTDKLVQKVDDIYMHPSDFSATK*
Ga0182015_107817582	3300014495	Palsa	MFADPDFQEMAKSEQANKLVEKVDATYMHPTDFSPMQ*
Ga0182024_100772173	3300014501	Permafrost	MRADPDFQALIKENSEPASKLVEKVDVMYMRPTDFSPMK*
Ga0181522_102630082	3300014657	Bog	MADPEFQEVLKSEQANKLVEKIDSTYMRPTDFSPIK*
Ga0137418_111321821	3300015241	Vadose Zone Soil	AMLADPEVQEAIKSEQANKLVEKIDRTYMRSSDFSPMK*
Ga0132258_106755323	3300015371	Arabidopsis Rhizosphere	DPEFQELIKAEQANKLTEKIDRTYMRPTDFSPMK*
Ga0187802_101822451	3300017822	Freshwater Sediment	KKNWEAMHADPGFQKIVKSEQAEKLVEKVDSVYMHPTDFSLMK
Ga0187802_103431592	3300017822	Freshwater Sediment	ADPEVQEAIKSEEANKLVEKIDRMYMRSTDFSPMK
Ga0187877_13623891	3300017931	Peatland	WDAFGADPGFQEVVKAEQADRLVEKVDSTYMHPTDFSPMK
Ga0187781_101562754	3300017972	Tropical Peatland	MMADPEFQGVIKAEQANKLVEKIDRTYMRPTDFSPMK
Ga0187869_104403851	3300018030	Peatland	PNRQEAKEHWDAMRADPLFQEMLKSEQTEKRVENIEATYMHPTDFSPMK
Ga0187863_106352191	3300018034	Peatland	KKNWDAMRTDPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK
Ga0187875_100722263	3300018035	Peatland	ADPEFQEMLRSEQTEKLVEKIDSTYMHPSDFSPLK
Ga0187862_101204961	3300018040	Peatland	EEAKKNWDAMRADPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK
Ga0187859_108935281	3300018047	Peatland	KKNWDAMRADPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK
Ga0187784_111660993	3300018062	Tropical Peatland	ADPEVQEAIKSEQANKLVEKIDRTYMRSTDFSPMK
Ga0210403_102144872	3300020580	Soil	ADPGFQEVLKTEQADKTVEKIDVTYMHPTDFSPMK
Ga0210400_113752161	3300021170	Soil	GDRDAMRSDPEFQEIAKSEQADKLVEKVDVTYMHPTDFSPTK
Ga0210397_101941261	3300021403	Soil	RADPDFQAMLKSEQTEKTVEKIDATYMRPTDFSPMK
Ga0210394_116459052	3300021420	Soil	MRADPGFQEMLKSEQTEKTVEKIDSTYMRPTDFSRMK
Ga0126371_112115012	3300021560	Tropical Forest Soil	FHADPRFQEYVKAEEAEKLIDKVDSTYMRPTDFSLTR
Ga0126371_125346802	3300021560	Tropical Forest Soil	MLADPEVQEAIKSEQANKLVEKIDRTYMRSTDFSPMK
Ga0224569_1065301	3300022732	Rhizosphere	RADPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK
Ga0208935_10438592	3300025414	Peatland	AKKNWDAMRADPATQELLKSEQADKLLEKVDSTYMRPEDFSPAK
Ga0207775_1092411	3300026817	Tropical Forest Soil	EEAKKNWDAMLADAEVQEAIKSEEANKLVEKIDRTYMRSTDFSPMK
Ga0209116_10231272	3300027590	Forest Soil	DAMRADPAFQEVLKAEQANKTVEKIDETYMRPTDFSPMK
Ga0209330_10158283	3300027619	Forest Soil	MMADPEFQEVMKSEQANKLVEKIDSTYMRPTGFSPLK
Ga0209626_10544881	3300027684	Forest Soil	MLADSEVREAIKSEETNKLVEKIDRTYMRPTDFSPK
Ga0209530_12336632	3300027692	Forest Soil	EEMRADPATQELLKSEQADKLLEKVDSTYMRSTDFSPMK
Ga0209773_100647413	3300027829	Bog Forest Soil	MGDPEFQEVLKSERATKLVEKIDSTYMRPTDFSPMK
Ga0209580_101031412	3300027842	Surface Soil	KNWDAMRADSDFQELIRKNSEPASKLVEKVDVMYMRPTDFSPMK
Ga0209274_102925952	3300027853	Soil	WDGMRADPEFQEVLKAEQANKTVEKIDETYMRPTDFSPMK
Ga0209693_105278402	3300027855	Soil	WEAMFNDPGFAEIVKDEAAEKLVEGVDSTYMDPTDFSPMN
Ga0209169_101677302	3300027879	Soil	GDAMMADPEFQDVIKAEQAEKLVEKVDVTYMRATDFSLIK
Ga0209275_103545212	3300027884	Soil	ADPEFQNVIKDEQAEKLVEKVDVTYMRPTDFSMIK
Ga0209624_104767612	3300027895	Forest Soil	MMADPEFQAVIKSEQVNKLVEKVDSTYMHPADFSPMK
Ga0265354_10096702	3300028016	Rhizosphere	MRGDPATQELLKSEQADKLLEKVDSTYMRPEDFSPMK
Ga0302152_100395323	3300028572	Bog	MRADPATQEMIKSEQADKLVEKIDSTYMRPEDFSPMK
Ga0302219_102584382	3300028747	Palsa	FRTDPAFQEELKSEQANKLVEKVDSTYMRPTDFSPMK
Ga0302221_100485264	3300028806	Palsa	WDAMEADPEFLEMVKSEQTVKLVQKVDSTFMLPTDFSPMK
Ga0222748_11288021	3300029701	Soil	KNWDAMFADPAFQEMMKSEQADKLVEKVDVTYMHPMDFSQMK
Ga0311369_111645482	3300029910	Palsa	MMADPEFQDVIKAEQAEKLVEKVDVTYMRATDFSLIK
Ga0311359_103550823	3300029914	Bog	EAKKNWDAMRADPATQEMIKSEQADKLVEKIDTTYMRPEDFSPMK
Ga0311359_104399852	3300029914	Bog	MRADPATQEMIKSERADKLVEKVDSTYMRPEDFSPMK
Ga0311340_101558621	3300029943	Palsa	MLADPEFQEMMKLEQTEKLVEKVDSTYMHPADFSPMK
Ga0311371_121294011	3300029951	Palsa	AMRADPAFQEALKSEQANKLVEKIDSTYMRPADFSPMK
Ga0311339_100509732	3300029999	Palsa	MGSGQTPEFQELLKAKQANKTVEKIGETYMRPTDFSPMK
Ga0311339_100769493	3300029999	Palsa	MLADPEFQEMMKLEQTEKLVEKVDSTYMHPADFSR
Ga0311339_118952841	3300029999	Palsa	AMRADPATQEMIKSEQADKLVEKIDSTYMRPEDFSPMK
Ga0302177_101071211	3300030053	Palsa	DAMLADPEVQEAIKSEEANKLVEKIDRMYMRSTDFSPMK
Ga0302182_101250203	3300030054	Palsa	AKKNWDAMLADPEFQEMMKLEQTEKLVEKVDSTYMHPADFSR
Ga0302179_100120342	3300030058	Palsa	MGSGQTPEFQEVLKAEQANKTVEKIGETYMRPTDFSPMK
Ga0302275_106444851	3300030518	Bog	AMRADPATQEMIKSEQADKLVENIDSTYMRPADFSPMK
Ga0311356_108455851	3300030617	Palsa	ADPDFQEVIRKNSDPATKLVEKVDVTYMRPTDFSPIK
Ga0302180_100047186	3300031028	Palsa	GSGQTPEFQELLKAEQANKTVEKIGETYMRPTDFSPMK
Ga0302318_101847811	3300031258	Bog	ADPATQEMIKSEQADKLVENIDSTYMRPADFSPMK
Ga0307477_111349251	3300031753	Hardwood Forest Soil	ADPDFQELIRKNAEQANKLVEKVDVTYMRPTDFSPMK
Ga0307475_107536181	3300031754	Hardwood Forest Soil	EAKKNWDAMRADPDFQELMRKNSEQASKLVEKVDVMYMRPTDFSPMK
Ga0310916_112370322	3300031942	Soil	LADPEVQEAIKSEQANKLVEKIDRTYMRSTDFSPMK
Ga0307479_100562185	3300031962	Hardwood Forest Soil	MRADPDFQELIRKNSEQASKLVEKVDVMYMRPTDFSPMK
Ga0306922_111129731	3300032001	Soil	LADPEVQEAIKSEEANKLVEKIDRTYMRPTDFSPK
Ga0335079_105391193	3300032783	Soil	LHADPGFQEIVKSEQAEKLVEKVDSVYRHPADFSPMK
Ga0335074_111893112	3300032895	Soil	PDFQEIVRKNSDPATKLVDKIDVLYMRPTDFSPMK
Ga0370515_0313527_548_661	3300034163	Untreated Peat Soil	ADPDFQALIKESSDPARKLVEKVDVMYMRPTDFSRMK

Hidden Markov Model


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