Metagenome / Metatranscriptome Family F099614

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099614
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	MIVLRLLYTAAVMVVVIWLLRTGNPVGGLLAVPAAAVWLRREAESGRLAARVRRAHRH
Number of Associated Samples	69
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.11 %
% of genes near scaffold ends (potentially truncated)	30.10 %
% of genes from short scaffolds (< 2000 bps)	93.20 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil (21.359 % of family members)
Environment Ontology (ENVO)	Unclassified (25.243 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.63% β-sheet: 0.00% Coil/Unstructured: 38.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13669	Glyoxalase_4	3.88
PF13476	AAA_23	2.91
PF07040	DUF1326	2.91
PF00106	adh_short	1.94
PF02627	CMD	1.94
PF13561	adh_short_C2	1.94
PF00301	Rubredoxin	1.94
PF07736	CM_1	1.94
PF04107	GCS2	1.94
PF01842	ACT	1.94
PF02798	GST_N	1.94
PF02749	QRPTase_N	1.94
PF10590	PNP_phzG_C	0.97
PF09334	tRNA-synt_1g	0.97
PF00293	NUDIX	0.97
PF00583	Acetyltransf_1	0.97
PF13489	Methyltransf_23	0.97
PF03129	HGTP_anticodon	0.97
PF02922	CBM_48	0.97
PF10057	MpsC	0.97
PF01738	DLH	0.97
PF01326	PPDK_N	0.97
PF02371	Transposase_20	0.97
PF03492	Methyltransf_7	0.97
PF06348	DUF1059	0.97
PF01926	MMR_HSR1	0.97
PF00248	Aldo_ket_red	0.97
PF05988	DUF899	0.97
PF01551	Peptidase_M23	0.97
PF00482	T2SSF	0.97
PF12681	Glyoxalase_2	0.97
PF13683	rve_3	0.97
PF11139	SfLAP	0.97
PF08241	Methyltransf_11	0.97
PF07883	Cupin_2	0.97
PF00291	PALP	0.97
PF08840	BAAT_C	0.97
PF12697	Abhydrolase_6	0.97
PF03413	PepSY	0.97
PF01370	Epimerase	0.97
PF01425	Amidase	0.97
PF13555	AAA_29	0.97
PF00561	Abhydrolase_1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	2.91
COG0157	Nicotinate-nucleotide pyrophosphorylase	Coenzyme transport and metabolism [H]	1.94
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	1.94
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	1.94
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	1.94
COG4401	Chorismate mutase AroH	Amino acid transport and metabolism [E]	1.94
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.97
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.97
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.75 %
Unclassified	root	N/A	41.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.75 %
Unclassified	root	N/A	41.75 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	22.33 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	22.33 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.94 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	4.85 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	2.91 %
Capillimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae	2.91 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.91 %
Capillimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium	2.91 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples	1.94 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.94 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1.94 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.97 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	2.91 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.94 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1.94 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.94 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.97 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.97 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.97 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.75 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	2.91 %
uncultured Solirubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1.94 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	1.94 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.94 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	1.94 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.97 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.97 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.97 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.97 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105143025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	730	Open in IMG/M
3300000956\|JGI10216J12902_100080632	Not Available	1009	Open in IMG/M
3300001305\|C688J14111_10213736	Not Available	600	Open in IMG/M
3300002568\|C688J35102_117700110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300002568\|C688J35102_118079746	Not Available	528	Open in IMG/M
3300002568\|C688J35102_118156685	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300002568\|C688J35102_118204938	Not Available	538	Open in IMG/M
3300002568\|C688J35102_118521223	Not Available	568	Open in IMG/M
3300002568\|C688J35102_118934991	Not Available	615	Open in IMG/M
3300002568\|C688J35102_118985540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	622	Open in IMG/M
3300002568\|C688J35102_119687557	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300002568\|C688J35102_119906105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	810	Open in IMG/M
3300002568\|C688J35102_119989877	Not Available	838	Open in IMG/M
3300002568\|C688J35102_120237418	Not Available	942	Open in IMG/M
3300002568\|C688J35102_120371376	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300002568\|C688J35102_120581646	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300002568\|C688J35102_120661538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1312	Open in IMG/M
3300002568\|C688J35102_120673488	Not Available	1331	Open in IMG/M
3300002568\|C688J35102_120718418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1412	Open in IMG/M
3300004081\|Ga0063454_101037417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300004081\|Ga0063454_101161354	Not Available	636	Open in IMG/M
3300004081\|Ga0063454_101893149	Not Available	525	Open in IMG/M
3300004153\|Ga0063455_100211584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	972	Open in IMG/M
3300004153\|Ga0063455_100605897	Not Available	714	Open in IMG/M
3300004463\|Ga0063356_100366176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1832	Open in IMG/M
3300004479\|Ga0062595_100689108	Not Available	818	Open in IMG/M
3300004479\|Ga0062595_102357628	Not Available	526	Open in IMG/M
3300004480\|Ga0062592_102377528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300005093\|Ga0062594_100863066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	848	Open in IMG/M
3300005093\|Ga0062594_101392007	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300005329\|Ga0070683_101847480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300005337\|Ga0070682_100468775	Not Available	969	Open in IMG/M
3300005337\|Ga0070682_101677527	Not Available	551	Open in IMG/M
3300005338\|Ga0068868_101763910	Not Available	584	Open in IMG/M
3300005365\|Ga0070688_101558281	Not Available	539	Open in IMG/M
3300005441\|Ga0070700_100046537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2681	Open in IMG/M
3300005547\|Ga0070693_100436721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	916	Open in IMG/M
3300005718\|Ga0068866_11389602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300006031\|Ga0066651_10433619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	698	Open in IMG/M
3300006175\|Ga0070712_102034182	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300006755\|Ga0079222_10033118	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300006755\|Ga0079222_10316086	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300006804\|Ga0079221_10050092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1868	Open in IMG/M
3300006954\|Ga0079219_10612038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	801	Open in IMG/M
3300009098\|Ga0105245_11378954	Not Available	755	Open in IMG/M
3300009148\|Ga0105243_10960794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	854	Open in IMG/M
3300010044\|Ga0126310_10788683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	729	Open in IMG/M
3300010045\|Ga0126311_11901451	Not Available	505	Open in IMG/M
3300010371\|Ga0134125_10547007	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300010371\|Ga0134125_11984476	Not Available	633	Open in IMG/M
3300010396\|Ga0134126_12780891	Not Available	531	Open in IMG/M
3300010403\|Ga0134123_12662841	Not Available	568	Open in IMG/M
3300011107\|Ga0151490_1623894	Not Available	527	Open in IMG/M
3300012212\|Ga0150985_112009566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	781	Open in IMG/M
3300012212\|Ga0150985_112202287	Not Available	659	Open in IMG/M
3300012212\|Ga0150985_115273844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300012212\|Ga0150985_121807778	Not Available	622	Open in IMG/M
3300012469\|Ga0150984_103837101	Not Available	619	Open in IMG/M
3300012469\|Ga0150984_108182932	Not Available	615	Open in IMG/M
3300012469\|Ga0150984_110763622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1593	Open in IMG/M
3300012915\|Ga0157302_10089258	Not Available	951	Open in IMG/M
3300012955\|Ga0164298_10045862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	2070	Open in IMG/M
3300012958\|Ga0164299_11272600	Not Available	561	Open in IMG/M
3300012958\|Ga0164299_11358530	Not Available	547	Open in IMG/M
3300012958\|Ga0164299_11668411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	505	Open in IMG/M
3300012961\|Ga0164302_10225769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	1172	Open in IMG/M
3300012985\|Ga0164308_10869848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	791	Open in IMG/M
3300012988\|Ga0164306_10115529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1778	Open in IMG/M
3300014325\|Ga0163163_12432816	Not Available	582	Open in IMG/M
3300014497\|Ga0182008_10055998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1949	Open in IMG/M
3300015209\|Ga0167629_1015725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2810	Open in IMG/M
3300015371\|Ga0132258_10648194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium	2655	Open in IMG/M
3300015371\|Ga0132258_11793460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1546	Open in IMG/M
3300015372\|Ga0132256_101296502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	841	Open in IMG/M
3300015374\|Ga0132255_102511172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	787	Open in IMG/M
3300018433\|Ga0066667_12319030	Not Available	503	Open in IMG/M
3300019767\|Ga0190267_11549070	Not Available	514	Open in IMG/M
3300025899\|Ga0207642_10747392	Not Available	619	Open in IMG/M
3300025908\|Ga0207643_10066462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2068	Open in IMG/M
3300025927\|Ga0207687_10240129	Not Available	1435	Open in IMG/M
3300025935\|Ga0207709_10410563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1037	Open in IMG/M
3300025938\|Ga0207704_11203543	Not Available	646	Open in IMG/M
3300025961\|Ga0207712_11302829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	649	Open in IMG/M
3300027725\|Ga0209178_1327030	Not Available	569	Open in IMG/M
3300027775\|Ga0209177_10086100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	970	Open in IMG/M
3300028587\|Ga0247828_10031462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2176	Open in IMG/M
3300028589\|Ga0247818_10661171	Not Available	722	Open in IMG/M
3300028590\|Ga0247823_11232114	Not Available	560	Open in IMG/M
3300028592\|Ga0247822_11462389	Not Available	576	Open in IMG/M
3300028784\|Ga0307282_10394133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670	Open in IMG/M
3300028807\|Ga0307305_10575349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300028824\|Ga0307310_10699842	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300028881\|Ga0307277_10051485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1679	Open in IMG/M
3300030336\|Ga0247826_10231278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1286	Open in IMG/M
3300030336\|Ga0247826_10237124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1272	Open in IMG/M
3300030336\|Ga0247826_11240827	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031152\|Ga0307501_10033737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1064	Open in IMG/M
3300031901\|Ga0307406_11751571	Not Available	551	Open in IMG/M
3300031938\|Ga0308175_101772687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300032013\|Ga0310906_10333234	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	981	Open in IMG/M
3300032074\|Ga0308173_11926962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	557	Open in IMG/M
3300033550\|Ga0247829_10439766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1076	Open in IMG/M
3300033550\|Ga0247829_11767408	Not Available	510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.73%
Host-Associated	Host-Associated	24.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.73%
Plants	Host-Associated → Plants	24.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.68%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.57%
Loam	Environmental → Terrestrial → Soil → Loam	28.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.36%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	21.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	11.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	21.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015209	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G3B, Proglacial river margin, by glacier terminus)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1051430252	3300000364	Soil	MIALRLAYTVAVMGLVIWLLRTGNAAGGLLVVPAAAVWLRHEAESGRLATRLGRARRH*
JGI10216J12902_1000806321	3300000956	Soil	MIVLRLGYTAAVMVVVIWLLRTGNPVGGLLLVPAAAVWLRREAESGRLAARARRALRL*
C688J14111_102137361	3300001305	Soil	LALRLAYTAVVMVLVIELLRGGNPVGGLLAVPAAAVWLRREAESGRLAGRFHRSHHE*
C688J35102_1177001102	3300002568	Soil	MILLRLLYTAVVMVAVIALLRSGNALGGLLIVPAAAVWLRNEAESGRLLARLRGAQRR*
C688J35102_1180797461	3300002568	Soil	MIVLRLLYTTAVMSEVIWLLRTGNPVGGLLVVPAAAVWLRREAESGRLAARVRRTLRQ*
C688J35102_1181566852	3300002568	Soil	MIVLRLLYTAAVMVVVIWLLRTGNPLGGLLLAPAAAVWLRREAESGRLTARVRRTLRQ*
C688J35102_1182049381	3300002568	Soil	MIVLRVLDMAAVMVVVLWLSRTGKRVGGLLLVPTAAVWVRRGAESGRLAGRVRRTLRQ*
C688J35102_1185212231	3300002568	Soil	MILLRLAYTAAVMVLVVWLLRTGRPLAGLLLVPLAAIWLRQEAESGRLKQRVRRALHL*
C688J35102_1189349911	3300002568	Soil	VVVIFLRLLYTAAVMVVVIWLLRTRNPVAGLLLVPAAAVWLRREAESGRLAA
C688J35102_1189855401	3300002568	Soil	MIMLRLAYTAAVMVVVIWLLRTGNPVGGLLIVPAAAVWLRHEAESGRLATRLRRASRQ*
C688J35102_1196875571	3300002568	Soil	MIILRLAYTAVVMVIVVWLLRAGNPVGGLVVIPALAVWLRRDAESGRLAARVRRATHQ*
C688J35102_1199061052	3300002568	Soil	LTPAFARRMLPVMIVLRLLYTAAVMVVVLWLLRTGNPLGALLIVPAAAVWLRHEAESGRLATRLRRASRR*
C688J35102_1199898771	3300002568	Soil	MLVVRLLYTTAVMAMVIWLLRTGNPVGGLLIVPAAAIWLRREAESGRLAARLRRASHR*
C688J35102_1202374181	3300002568	Soil	MIVLRLAYTAAVMVVVIWLLRTGNPVGGLFLVPAAAVWLRREAESGRLSARVRRALGQ*
C688J35102_1203713762	3300002568	Soil	MVIVRLVYTAAVMVIVVSLLRAGNPVGGLVIVPAVAVWLRRDAESGRLAARVRRAIHQ*
C688J35102_1205816461	3300002568	Soil	MIAVRLLYTAAVMVVVIWLLRAGNPVGGLLLVPAAAVWLRREAESGRLAARLRRRLPH*
C688J35102_1206615382	3300002568	Soil	MFAVRLLYVAAVMTVVILLLRAGNPVGGLLIVPAVAVWLRREAESGRLAGRVRRAHRH*
C688J35102_1206734881	3300002568	Soil	MVIVRFVYTAVVMVIVVWLLRAGNPVGGLVIVPAMAVWLRRDAESGRLAARVRRAIHQ*
C688J35102_1207184182	3300002568	Soil	MIVLRLLYTAAVMVLAIWLLRTGNPLGGLLLLPVAAVLLRREVESGRLAARMRRALR*
Ga0063454_1010374172	3300004081	Soil	DDAPPMEDRMAVIVLRLVYTAVVMAVVIGLLRAGNPLGGLVLAPAAAVWLRREAESGRLAGRLNRAIHR*
Ga0063454_1011613541	3300004081	Soil	MILVRLAYTAAVMVLVVWLLRTGRPLAGLLLVPLAAIWLRQEAESGRLKQRVRRALHL*
Ga0063454_1018931492	3300004081	Soil	MIILRPAYTAVVMVIVVWLLRAGNPVGGLVVIPALAVWLRRDAESGRLAARVRRATHQ*
Ga0063455_1002115841	3300004153	Soil	MILVRLLYTAVVMVAVIGLLRSGNALGGLLIVPAVAVWLRNEAESGRLLARLRGAQRR*
Ga0063455_1006058972	3300004153	Soil	MLALRLAYTAVVMVLVIELLRGGNPVGGLLAVPAAAVWLRREAESGRLAARFRSHHE*
Ga0063356_1003661762	3300004463	Arabidopsis Thaliana Rhizosphere	MIALRLLYTAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRLLQH*
Ga0062595_1006891081	3300004479	Soil	MFVLRLLYTAAVMVVVISFLRAGNPVAGLVLAPAAAVLLRREAESGRLAARVRRALR*
Ga0062595_1023576282	3300004479	Soil	MFPREDPLNMIVLRLLYTAAVMVVVIWLLRTGNPVGGLLLVPAAAVWLRREAESGRLAARVHRAHRH*
Ga0062592_1023775281	3300004480	Soil	SPDALVMIALRLAYTVAVMGLVIWLLRTGNAVGGLLVVPAAAVWLRHEAESGRLATRLGRARRH*
Ga0062594_1008630661	3300005093	Soil	LAYTAAVMVIVVWLLRSGNPLGGLVLVPAAAVWLRREAESGRLAARARRAIHH*
Ga0062594_1013920072	3300005093	Soil	MIVVRVLYTLAVMAVVIALLRAGNPVAGLVVVPAAAVWLRRRAESGALAALLRR*
Ga0070683_1018474801	3300005329	Corn Rhizosphere	WLLRTGNPLGGLLVVPAAAVWLRHEAESGRLATRLRRARRH*
Ga0070682_1004687752	3300005337	Corn Rhizosphere	MMIVRLVYTAVVMVIVVWLLRTGNPVGGLVVVPAVAVWLRRDAESGRLTARVRRAIHH*
Ga0070682_1016775272	3300005337	Corn Rhizosphere	MLVLRLVYTAAVMVVVVWLLRSGNPVEGLLLVPAAAVWLRTEAESGRLAARVRRAPRQ*
Ga0068868_1017639101	3300005338	Miscanthus Rhizosphere	MIVVRVLYTLAVMAVVVALLRAGNPVAGLVVVPAAAVWLRRRAESGAHAALLRR*
Ga0070688_1015582811	3300005365	Switchgrass Rhizosphere	MMIVRLVYTAVVMVIVVWLLRAGNPVGGLVVVPAVAVWLRRDAESGRLTARVRRAIHH*
Ga0070700_1000465372	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MIIVRLAYTAAVMVIVVWLLRSGNPLGGLVLVPAAAVWLRREAESGRLAARARRAIHH*
Ga0070693_1004367212	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LLRLAYTAAVMVVVIWLLRSGNPVGGLLIVPALAVWLRREAESGRLQARLRRH*
Ga0068866_113896022	3300005718	Miscanthus Rhizosphere	MMVLRVVYTAAVMVVVIWLLRAGNPVGGLLLVPAAAVLVRREAESGRLAARVRRALRH*
Ga0066651_104336192	3300006031	Soil	MLPLRLLYTAAVMTLVIWLLKTGNPLGGLVIVPALAVWLRRAVESGRLLRSR*
Ga0070712_1020341822	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AMIIARLVYTTVVMVIVVALLRGGNPVGGLLVVPAAAVWLRREAETGRLGARARRALHHE
Ga0079222_100331183	3300006755	Agricultural Soil	MVVVIWLLRTGTPVGGLLIVPALAVWFRREAESGRLQARVRRALRH*
Ga0079222_103160861	3300006755	Agricultural Soil	MIAVRLLYTAAVMAIVIWLLRSGNPVGGLLVVPAAAVWLRRDAESGRLAARVRRARHR*
Ga0079221_100500924	3300006804	Agricultural Soil	MILLRLAYTAAVMVVVIWLLRSGNPVGGLLIVPALAVWLRREAESGRLQARLRRH*
Ga0079219_106120382	3300006954	Agricultural Soil	MILLRLAYTAAVMVVVIWLLRTGNPLGGLLIVPALAVWFRREAESGRLQARVRRALRH*
Ga0105245_113789541	3300009098	Miscanthus Rhizosphere	VMVVVICLLRTGNPVGGLLIVPAAAVWLRREAESGRLAARIHRTLRN*
Ga0105243_109607941	3300009148	Miscanthus Rhizosphere	GVLGWRILWSMMVLRVVYTAAVMVVVIWLLRAGNPVGGLLLVPAAAVLVRREAESGRLAARVRRALRH*
Ga0126310_107886832	3300010044	Serpentine Soil	MIVLRLAYTAAVMVVVIWLLRTGNPLAGLLVVPAAAVWVRHEAESGRLATRLRRASRR*
Ga0126311_119014511	3300010045	Serpentine Soil	MIVVRLLYTAAVMVVVIWLLRTGNPVGGLFVVPATAVWLRREAESGRLAGRVRRARPH*
Ga0134125_105470072	3300010371	Terrestrial Soil	MIVVRVLYTLAVMAVVIALLRAGNPVAGLVVVPAAAVWLRRRAESGALAARLRR*
Ga0134125_119844762	3300010371	Terrestrial Soil	GPRAPHSERGLDAGLPSPDALDVILLRLAYTAAVMVVVISLLRSGNPVGGLLIVPATAVWLRQEAASGRLATRLRRALRQ*
Ga0134126_127808911	3300010396	Terrestrial Soil	MFPREDPLNMIVLRLLYTAAVMVVVIWLLRTGNPIGGLLLVPAAAVWLRREAESGRLAARVHRAHRH*
Ga0134123_126628411	3300010403	Terrestrial Soil	MLVLRLVYTAAVMVVVVWLLRSGNPVGGLLLVPAAAVWLRTEAESGRLAARVRRAPRQ*
Ga0151490_16238941	3300011107	Soil	MIVLRLLYTAAVMVVVIWLLRTGNPVGGLLAVPAAAVWLRREAESGRLAARVRRAHRH*
Ga0150985_1120095662	3300012212	Avena Fatua Rhizosphere	LIFLRLFYTAAVMVLVIWLLETGRPLGGLLIVPAAAVWLRHAAESGRLAQRFHRSPAP*
Ga0150985_1122022872	3300012212	Avena Fatua Rhizosphere	MIIVRLVYTAAVMVIVVWLLRTGNPVGGLVVVPAVAVWLRRDAESGRLAARVRRAIHQ*
Ga0150985_1152738443	3300012212	Avena Fatua Rhizosphere	MEDRVAMIVLRLVYTAVVMAVVIGLLRAGNPLGGLVLAPAAAVWLRREVESGRLAGRLHRARHR*
Ga0150985_1218077781	3300012212	Avena Fatua Rhizosphere	HASSKQDRLVMGIVRFVYSAAVMVIVVWLLRAGNPVGGLVIVPAMAVWLRRDAESGRLAARVRRAIHQ*
Ga0150984_1038371011	3300012469	Avena Fatua Rhizosphere	MIVLRLLYTAAVMVVVFWLLRAGNRVGGLLFVPAAAVLLRREAESGRLVARVRRALR*
Ga0150984_1081829321	3300012469	Avena Fatua Rhizosphere	TAVVMAVVIGLLRAGNPLGGLVLAPAAAVWLRREVESGRLAGRLHRARHR*
Ga0150984_1107636223	3300012469	Avena Fatua Rhizosphere	MLALRLAYTAVVMVLVIELLRGGNPVGGLLAVPAAAVWLRREAESGRLAGRFHRSHHE*
Ga0157302_100892582	3300012915	Soil	MIALRLAYTGAVMVVVIWLLRTGNPVGGLFVVPAAAVWLRREAESGRLSARVRRALRH*
Ga0164298_100458622	3300012955	Soil	MVVARLAYTAAVMVVVLWLLETGRPLGGLLIVPLAAVWLRHEAESGRLLGRIRRTTRV*
Ga0164299_112726002	3300012958	Soil	MIVLRLLYTAAVMVVVIWLLRTGNPVGGLLLVPAAAVWLRREAESGRLAARVHRAHRN*
Ga0164299_113585302	3300012958	Soil	MVVARLAYTAAVMVVVLWLLETGRPLGGLLIVPLAAVWLRHEAESGRLLGRIRRMTRI*
Ga0164299_116684111	3300012958	Soil	DLDCRQPSRDARVVILLRFAYTAAVMVVVIWLLRTGNPIGGLLVVPAGAVWLRREAESGRLSARARRVLHR*
Ga0164302_102257691	3300012961	Soil	VFLLLRVAYTVAVMVLVVWLLKSGRPLGGLLMVPAAAIWLRHEAESGRLMDRVRRVSKHV
Ga0164308_108698481	3300012985	Soil	MVVARLAYTAAVMVVVLWLLETGRPLGGLLIVPLAAVWLRHEAESGRLLGRIRRMTRV*
Ga0164306_101155292	3300012988	Soil	MVVARLAYTAAVMVVVLWLLETGRPLGGLLIVPLAAVWLRHEAESGRLLGRVRRMTRV*
Ga0163163_124328161	3300014325	Switchgrass Rhizosphere	VVMVIVVWLLRAGNPVGGLVVVPAVAVWLRRDAESGRLTARVRRAIHH*
Ga0182008_100559983	3300014497	Rhizosphere	MFVLRLLYTAAVMVVVISFLRAGNPVAGLLLVPTAAVLLRREAESGRLAARVRRALR*
Ga0167629_10157253	3300015209	Glacier Forefield Soil	MILVRLAFTAAVMVLVLWLLETGRPVGGLLVVPLAAVWLRREAESGRLTQRVRRIARV*
Ga0132258_106481944	3300015371	Arabidopsis Rhizosphere	MIVLRLLYTAVVMVVVIWMLRAGNPVAGLLVVPAAAVWLRREAESGRLATRVRRALRQ*
Ga0132258_117934602	3300015371	Arabidopsis Rhizosphere	MIALRFAYTAAVMVVVIWLLRTGNPVGGLFVVPAAAVWLRREAESGRLSARVRRALRH*
Ga0132256_1012965021	3300015372	Arabidopsis Rhizosphere	MIALRLAYTAAVMVVVIWLLRTGNPVGGLFVVPAAAVWLRREAESGRLSARVRRALRH*
Ga0132255_1025111721	3300015374	Arabidopsis Rhizosphere	MLMLRLLYTAAVMVVVVWLLRSGNPVGGLLLVPAAAVLLRREAESGRLAARVR
Ga0066667_123190302	3300018433	Grasslands Soil	MLPLRLLYTAAVMTLVIWLLKTGNPLGGLVIVPALAVWLRRAVESGRLLRSR
Ga0190267_115490701	3300019767	Soil	LRLLSMAAVMVVVIWLLRSGNPVGGLIIVPAAAVWLRREAESGRLAARVRRTLRQ
Ga0207642_107473922	3300025899	Miscanthus Rhizosphere	MIVVRVLYTLAVMAVVIALLRAGNPVAGLVVVPAAAVWLRRRAESGALAALLRR
Ga0207643_100664622	3300025908	Miscanthus Rhizosphere	MIIVRLAYTAAVMVIVVWLLRSGNPLGGLVLVPAAAVWLRREAESGRLAARARRAIHH
Ga0207687_102401294	3300025927	Miscanthus Rhizosphere	MMIVRLVYTAVVMVIVVWLLRAGNPVGGLVVVPAVAVWLRRDAESGRLTARVRRAIHH
Ga0207709_104105633	3300025935	Miscanthus Rhizosphere	GVLGWRILWSMMVLRVVYTAAVMVVVIWLLRAGNPVGGLLLVPAAAVLVRREAESGRLAARVRRALRH
Ga0207704_112035431	3300025938	Miscanthus Rhizosphere	LAVMAVVIALLRAGNPVAGLVVVPAAAVWLRRRAESGALAALLRR
Ga0207712_113028292	3300025961	Switchgrass Rhizosphere	MMIVRLVYTAVVMVIVVWLLRAGNPVGGLVVVPAVAVWLRRDAESGRLT
Ga0209178_13270302	3300027725	Agricultural Soil	MILLRLAYTAAVMVVVIWLLRSGNPVGGLLIVPALAVWLRREAESGRLQARLRRH
Ga0209177_100861002	3300027775	Agricultural Soil	MILLRLAYTAAVMVVVIWLLRTGNPLGGLLIVPALAVWFRREAESGRLQARVRRALRH
Ga0247828_100314622	3300028587	Soil	VIALRLLYTAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRMLQH
Ga0247818_106611712	3300028589	Soil	MADPGLVIALRLLYTAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRLLQH
Ga0247823_112321142	3300028590	Soil	MVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRLLQH
Ga0247822_114623891	3300028592	Soil	LLYTAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRLLQH
Ga0307282_103941331	3300028784	Soil	MIVLRLAYTAAVMVVVIWLLRTGNPLGGLLIVPAAAVWLRHEAESGRLATRLRRARRRA
Ga0307305_105753491	3300028807	Soil	LADPLVVIVLRLLYTAAVMVVVIWLLRTGNPVGGLLLVQAAAVWLRREAESGRLAARVRRAPRP
Ga0307310_106998421	3300028824	Soil	DSGLLSPDALVMLVLRLVYTAAVMVVVIWLLRTGNPLGGLLIVPAAAVWLRHEAESGRLATRLRRARRRA
Ga0307277_100514852	3300028881	Soil	MIALRLAYTAAVMVVVIWLLRSGNPLGGLLIVPAAAVWLRHEAESGRLAMRLRRARRH
Ga0247826_102312783	3300030336	Soil	MMILRLVYMAAVMIVIVWLLRTGNPVGGLLLVPAAAVCLRREAESGRLARRARRVLDHF
Ga0247826_102371241	3300030336	Soil	VIALRLLYTAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRLLQH
Ga0247826_112408272	3300030336	Soil	MIVVRVLYTLAVMAVVVALLRAGNPVAGLVVVPAAAVWLRRRAESGALAALLRR
Ga0307501_100337372	3300031152	Soil	MLVLRLVYTAAVMVVVIWLLRTGNPLGGLLIVPAAAVWLRHEAESGRLATRLRRASRR
Ga0307406_117515711	3300031901	Rhizosphere	VPRLLYTAAVMVVVIWLLRAGNPVGGLLLVPAAAVLLRREAESGRLATRVRRALR
Ga0308175_1017726872	3300031938	Soil	AAVMVLVIWLLRTGNPVDGLLIVPAAAVWLRREAESGRLAARVRRAPRH
Ga0310906_103332342	3300032013	Soil	MIVLRLVYTAAVMVVVVWLLRAGNPVGGLLVVPAAAVWLRREAESGRLAARAGRALRR
Ga0308173_119269621	3300032074	Soil	VVMIVLRLAYTAAVMAVVIWLLRTGNPLGGLLIVPAAAVWLRHEAESGRLATRLRRASRR
Ga0247829_104397662	3300033550	Soil	TAAVMVAVIWLLRAGNPVGGLVVVPAAAVWLRRKAESGELATRARRMLQH
Ga0247829_117674081	3300033550	Soil	MIIARLVYTAAVMVIVVWLLRTGNPVGGLVIVPAVAILLRRDAESGRLAARVRRAVHQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099614

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences