Metagenome / Metatranscriptome Family F099642

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099642
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	117 residues
Representative Sequence	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT
Number of Associated Samples	59
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	25.24 %
% of genes near scaffold ends (potentially truncated)	28.16 %
% of genes from short scaffolds (< 2000 bps)	76.70 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.107 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil (22.330 % of family members)
Environment Ontology (ENVO)	Unclassified (51.456 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.573 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.29% β-sheet: 23.29% Coil/Unstructured: 53.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00293	NUDIX	3.88
PF13407	Peripla_BP_4	2.91
PF00903	Glyoxalase	1.94
PF05974	DUF892	1.94
PF00106	adh_short	0.97
PF00497	SBP_bac_3	0.97
PF08281	Sigma70_r4_2	0.97
PF12680	SnoaL_2	0.97
PF01478	Peptidase_A24	0.97
PF00011	HSP20	0.97
PF13377	Peripla_BP_3	0.97
PF13541	ChlI	0.97
PF00076	RRM_1	0.97
PF03631	Virul_fac_BrkB	0.97
PF02518	HATPase_c	0.97
PF09594	GT87	0.97
PF14361	RsbRD_N	0.97
PF00216	Bac_DNA_binding	0.97
PF07040	DUF1326	0.97
PF01789	PsbP	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	1.94
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.97
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.97
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
All Organisms	root	All Organisms	36.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
cellular organisms	root	All Organisms → cellular organisms	36.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.80 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	3.88 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	3.88 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.97 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.97 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	3.88 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.97 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.97 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.88 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.97 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.97 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.88 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.97 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	0.97 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.11 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.85 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.88 %
Rhizobium sp. 2MFCol3.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. 2MFCol3.1	0.97 %
Ktedonobacter sp. SOSP1-52	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. SOSP1-52	0.97 %
Blastococcus sp. LR1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. LR1	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1015429	Not Available	736	Open in IMG/M
3300001867\|JGI12627J18819_10010633	Not Available	3619	Open in IMG/M
3300001867\|JGI12627J18819_10040586	Not Available	1940	Open in IMG/M
3300001867\|JGI12627J18819_10051576	Not Available	1717	Open in IMG/M
3300001867\|JGI12627J18819_10093638	Not Available	1243	Open in IMG/M
3300001867\|JGI12627J18819_10103217	Not Available	1177	Open in IMG/M
3300001867\|JGI12627J18819_10124695	Not Available	1057	Open in IMG/M
3300001867\|JGI12627J18819_10127708	Not Available	1042	Open in IMG/M
3300001867\|JGI12627J18819_10139315	Not Available	991	Open in IMG/M
3300001867\|JGI12627J18819_10188973	Not Available	833	Open in IMG/M
3300005434\|Ga0070709_10122990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1762	Open in IMG/M
3300005435\|Ga0070714_100322797	Not Available	1444	Open in IMG/M
3300005435\|Ga0070714_101054644	Not Available	792	Open in IMG/M
3300005436\|Ga0070713_100039663	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3824	Open in IMG/M
3300005602\|Ga0070762_10180763	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1281	Open in IMG/M
3300005764\|Ga0066903_106425116	Not Available	613	Open in IMG/M
3300005921\|Ga0070766_10803817	Not Available	641	Open in IMG/M
3300006028\|Ga0070717_10054206	All Organisms → cellular organisms → Bacteria	3307	Open in IMG/M
3300006175\|Ga0070712_100857117	Not Available	782	Open in IMG/M
3300006176\|Ga0070765_100039778	All Organisms → cellular organisms → Bacteria	3752	Open in IMG/M
3300006893\|Ga0073928_10001454	All Organisms → cellular organisms → Bacteria	45367	Open in IMG/M
3300006893\|Ga0073928_10004381	All Organisms → cellular organisms → Bacteria	20977	Open in IMG/M
3300010048\|Ga0126373_10624006	Not Available	1132	Open in IMG/M
3300012202\|Ga0137363_10125095	Not Available	1989	Open in IMG/M
3300012202\|Ga0137363_10499457	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300012971\|Ga0126369_13544489	Not Available	511	Open in IMG/M
3300016341\|Ga0182035_10713202	Not Available	875	Open in IMG/M
3300016357\|Ga0182032_11664400	Not Available	556	Open in IMG/M
3300016422\|Ga0182039_10247288	Not Available	1451	Open in IMG/M
3300020140\|Ga0179590_1038093	Not Available	1208	Open in IMG/M
3300020140\|Ga0179590_1099147	Not Available	784	Open in IMG/M
3300020581\|Ga0210399_10868509	Not Available	733	Open in IMG/M
3300020582\|Ga0210395_10368007	Not Available	1081	Open in IMG/M
3300021046\|Ga0215015_10599316	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1281	Open in IMG/M
3300021168\|Ga0210406_10094182	All Organisms → cellular organisms → Bacteria	2549	Open in IMG/M
3300021168\|Ga0210406_10129983	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300021168\|Ga0210406_10379595	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300021168\|Ga0210406_10609686	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300021168\|Ga0210406_10742338	Not Available	752	Open in IMG/M
3300021170\|Ga0210400_10078132	Not Available	2599	Open in IMG/M
3300021178\|Ga0210408_10041647	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3606	Open in IMG/M
3300021361\|Ga0213872_10062301	Not Available	1685	Open in IMG/M
3300021384\|Ga0213876_10006551	All Organisms → cellular organisms → Bacteria	6350	Open in IMG/M
3300021405\|Ga0210387_10086071	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2604	Open in IMG/M
3300021432\|Ga0210384_11796654	Not Available	519	Open in IMG/M
3300021439\|Ga0213879_10102310	Not Available	804	Open in IMG/M
3300021444\|Ga0213878_10112376	Not Available	1112	Open in IMG/M
3300021479\|Ga0210410_10774264	Not Available	844	Open in IMG/M
3300021559\|Ga0210409_10746225	Not Available	851	Open in IMG/M
3300021559\|Ga0210409_11059970	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300021560\|Ga0126371_10277389	Not Available	1798	Open in IMG/M
3300022557\|Ga0212123_10000995	All Organisms → cellular organisms → Bacteria	83103	Open in IMG/M
3300022557\|Ga0212123_10002902	All Organisms → cellular organisms → Bacteria	38374	Open in IMG/M
3300024288\|Ga0179589_10016307	Not Available	2364	Open in IMG/M
3300024288\|Ga0179589_10073674	Not Available	1344	Open in IMG/M
3300025905\|Ga0207685_10098895	Not Available	1243	Open in IMG/M
3300025915\|Ga0207693_10236052	Not Available	1436	Open in IMG/M
3300025915\|Ga0207693_10414848	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300025929\|Ga0207664_10614338	Not Available	976	Open in IMG/M
3300025939\|Ga0207665_10512814	Not Available	928	Open in IMG/M
3300027061\|Ga0209729_1002479	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300027061\|Ga0209729_1015278	Not Available	902	Open in IMG/M
3300027061\|Ga0209729_1022361	Not Available	768	Open in IMG/M
3300027061\|Ga0209729_1029436	Not Available	679	Open in IMG/M
3300027326\|Ga0209731_1017511	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300027502\|Ga0209622_1028154	Not Available	997	Open in IMG/M
3300027502\|Ga0209622_1030204	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300027502\|Ga0209622_1035826	Not Available	890	Open in IMG/M
3300027502\|Ga0209622_1037740	Not Available	868	Open in IMG/M
3300027648\|Ga0209420_1042576	Not Available	1385	Open in IMG/M
3300027884\|Ga0209275_10129627	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1320	Open in IMG/M
3300027889\|Ga0209380_10141639	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1403	Open in IMG/M
3300028906\|Ga0308309_10038725	All Organisms → cellular organisms → Bacteria	3346	Open in IMG/M
3300029636\|Ga0222749_10839205	Not Available	502	Open in IMG/M
3300030923\|Ga0138296_1786879	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300031022\|Ga0138301_1563184	Not Available	858	Open in IMG/M
3300031022\|Ga0138301_1685552	Not Available	1932	Open in IMG/M
3300031057\|Ga0170834_103075678	Not Available	618	Open in IMG/M
3300031231\|Ga0170824_125138803	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300031715\|Ga0307476_10050482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2834	Open in IMG/M
3300031715\|Ga0307476_10102759	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300031715\|Ga0307476_10220030	Not Available	1382	Open in IMG/M
3300031715\|Ga0307476_10644474	Not Available	785	Open in IMG/M
3300031715\|Ga0307476_11077717	Not Available	590	Open in IMG/M
3300031718\|Ga0307474_10043447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3315	Open in IMG/M
3300031718\|Ga0307474_10095900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. LR1	2216	Open in IMG/M
3300031718\|Ga0307474_10168148	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300031718\|Ga0307474_10982130	Not Available	668	Open in IMG/M
3300031718\|Ga0307474_11507581	Not Available	529	Open in IMG/M
3300031753\|Ga0307477_10061673	Not Available	2584	Open in IMG/M
3300031753\|Ga0307477_10078045	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300031754\|Ga0307475_10258260	Not Available	1396	Open in IMG/M
3300031754\|Ga0307475_10263363	Not Available	1382	Open in IMG/M
3300031754\|Ga0307475_10538107	Not Available	937	Open in IMG/M
3300031754\|Ga0307475_11342140	Not Available	553	Open in IMG/M
3300031823\|Ga0307478_10058295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. 2MFCol3.1	2884	Open in IMG/M
3300031823\|Ga0307478_10253960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1429	Open in IMG/M
3300031823\|Ga0307478_11284189	Not Available	609	Open in IMG/M
3300031962\|Ga0307479_10053737	All Organisms → cellular organisms → Bacteria	3878	Open in IMG/M
3300031962\|Ga0307479_10818543	Not Available	906	Open in IMG/M
3300031962\|Ga0307479_11785122	Not Available	567	Open in IMG/M
3300031962\|Ga0307479_11841183	Not Available	556	Open in IMG/M
3300032898\|Ga0335072_10336359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. SOSP1-52	1664	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.06%
Host-Associated	Host-Associated	1.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.17%
Aquatic	Environmental → Aquatic	3.88%
Plants	Host-Associated → Plants	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.88%
Roots	Host-Associated → Plants → Roots	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.31%
Loam	Environmental → Terrestrial → Soil → Loam	36.89%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	26.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	22.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	19.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	2.91%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_10154291	3300001084	Forest Soil	MNTLTSKADAMGQQFFYLEYKVTPKRSLTRVTGTEAVTIELPFKQVAHWRQQQPERYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEQEIHSASVLSQPVFVMEERDCDYEDDGIRAWFVA*
JGI12627J18819_100106332	3300001867	Forest Soil	MSEQFFYIQYKVTPRRTLNRATGNEAITIQLPVKHVVDWKLQQPDRYLTDEEIAIELTQAVAVATADRFVVLTPRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA*
JGI12627J18819_100405862	3300001867	Forest Soil	MNTLTSKTDTMRQEFFYLEYKVKPKLPLTRATGNEAITIELPADHVVDWKHQQPNRYLTDEEIAIELTQAVAIATADKFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDDGIRAWFVA*
JGI12627J18819_100515762	3300001867	Forest Soil	MRLFGPKTGTISQQFLYVQFKVTPKGTLTRATGSETVAIELPAKHVADWKLQLPGRYLTDEEIAIELTQGVATAAADRFVVLTHRPLKEWKSTQPRFLPERLSVMDERECEYKDNGIRAWFIGSGVLT*
JGI12627J18819_100936383	3300001867	Forest Soil	MKLMNTLTSKAETMRQEFFYLEYKVTPKLTLTRATGNAAVTIELPADHVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSERLFVMHERDCDYEDDGIRAWFVA*
JGI12627J18819_101032171	3300001867	Forest Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT*
JGI12627J18819_101246953	3300001867	Forest Soil	HPKTGTMSQQFLYVQFKVTPKGTLTRATGRETVATELPAKHVADWKRQRPGRYLTDEEIAIELTQGVAITTADRFVVLSHDPLKEQEIHSGRFLPERLPVMDERECDYEDNGIRAWFIGAGVLT*
JGI12627J18819_101277082	3300001867	Forest Soil	MSEQFFYIQYKVTPRRTLTRATGNEAITIELPIKHVIDWKRQQADRYLTDEEIAIELTQAIAIATADRFVVLTPRPIKAQEIHSGRLLSQCFFVMPERDCDYEDDDIRAWFVA*
JGI12627J18819_101393152	3300001867	Forest Soil	MSQQFRYGQFKVTPKGTLTRATGSETVAVELPVRHVADWKLQRPARYLTDEEIAIELTQGIAIAVADRFVVLTGDPLKEREIHSARFLPERLPILNERDCDYEDNAIRAWFIGPGVLI*
JGI12627J18819_101889732	3300001867	Forest Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVSDWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMNERDCDYEDNGIKAWFIGLGALT*
Ga0070709_101229902	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFIYLQFRVAPKKTLTRTTGSETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPSMDERECDYEDNGIRAWFIGSGVLT*
Ga0070714_1003227973	3300005435	Agricultural Soil	MNTLTSKVDTVRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCDYEDDGIRAWFVA*
Ga0070714_1010546441	3300005435	Agricultural Soil	AFDPKTAIMSQQFIYLQFRVAPKKTLTRTTGSETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGSGVLT*
Ga0070713_1000396631	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNTLTSKADTIRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCDYEDDGIRAWFVA*
Ga0070762_101807631	3300005602	Soil	ENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA*
Ga0066903_1064251162	3300005764	Tropical Forest Soil	MSEQFFYIQYKVTPRRTLTRGTGNEAITIELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSAMPERDCDYEDDDIRAWFVA*
Ga0070766_108038172	3300005921	Soil	GKLECFALLQSAKAENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA*
Ga0070717_100542064	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVSDWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT*
Ga0070712_1008571171	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFLYVQFKVTPKGTLTRATGSETVAIELPAKHVADWKLQRPGRYLTDEEIAIELTQGVATGTADRFVVLTHRPLKEREIHSAGFLPDRLPIMNERDCDYEDNGIRAWFIISLCRRQLLQP*
Ga0070765_1000397781	3300006176	Soil	MFRTPQSAKAENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEGEIHSSKFMSERLPLMNERECDYEDNGIRAWFSA*
Ga0073928_1000145438	3300006893	Iron-Sulfur Acid Spring	MNTLTSKADAMRQEFFYLEYKVTPKRSLTRVTGTEAITIELPFTQVAHWRQQQPERYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEQEIHSASVLSQPVFVTEERDCDYEDDGIRAWFVA*
Ga0073928_100043812	3300006893	Iron-Sulfur Acid Spring	MSAQFVYLQFNVTPKGSLSRGCGNGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEREIHSSKFMSERLPLMNERECDYEDNGIRAWFSAQHD*
Ga0126373_106240062	3300010048	Tropical Forest Soil	MSEQFFYIQYKVTPRRTLTRATGNEAITIELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSAMPERDCDYEDDDIRAWFVA*
Ga0137363_101250952	3300012202	Vadose Zone Soil	MNTLTSKADTMSQESFYLEYKVSPKRTLTRATGNEAVTIELPAEHVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDDGIRAWFVA*
Ga0137363_104994572	3300012202	Vadose Zone Soil	MRQESFYLEYKVTPKRSLTRVKGTEAVTIELPFKQVAHWRQQQPDRYLTDEEPAIELTQAVAIATTDRFVVLTQRPIKEREIHSGTLLSQPLFVMNERDCDYENDGIRAWFVA*
Ga0126369_135444891	3300012971	Tropical Forest Soil	MSEQFFYIQYKVTPRRTLTRGTGNEAITIELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSVMPERDCDYEDDDIRAWFVA*
Ga0182035_107132022	3300016341	Soil	MSKQFFYINYKVTPKRTLACATGNEAITIELPVGHVIDWKIQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSQHLFVMHERDCDYQDNGIR
Ga0182032_116644001	3300016357	Soil	FLYVQYKVTPKRTLARATGIEAVAIELPFKHVARWKHQQPDRYLTDEEIAIELTQAIAVATADRFVVLTHRPIKEQEIHSGKLLSGRLFIMSQRDCDYEDDGIRAWFLD
Ga0182039_102472882	3300016422	Soil	MSQPFLYVQYKVTPKRTLARATGIEAVAIELPFKHVARWKHQQPDRYLTDEEIAIELTQAIAVATADRFVVLTHRPIKEQEIHSGRLLSGRLFIMSERDCDYEDDGIRAWFLD
Ga0179590_10380931	3300020140	Vadose Zone Soil	SLSRGCGSGAIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEGEIHSSKFMSQRLPLMNERECDYEDNGIRAWFSAEQD
Ga0179590_10991471	3300020140	Vadose Zone Soil	MRQESFYLEYKVSPKRTLTRATGNEAVTIELPAEHVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDDGIRAWFVA
Ga0210399_108685091	3300020581	Soil	MNTLTSKADTIRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHER
Ga0210395_103680072	3300020582	Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVSDWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT
Ga0215015_105993162	3300021046	Soil	MSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSSDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA
Ga0210406_100941822	3300021168	Soil	MSQQFLYVQFKVTPKGTLTRASGSETVAIELPVKGVADWKLQRPDRYLTDEEIAIELTQGVAIAVADRFVVLSGDPLKEREIHSARFLPEHLAIMNERDCDYEDNGIRAWFIGAVVLT
Ga0210406_101299833	3300021168	Soil	MSQQFLYVQFKVTPKGTLTRTNGSETVAIELPVKHVADWKLRQPSRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEREIHSASLIPDRLLIMNERDCDYEDNGIRAWFIGPGVLT
Ga0210406_103795953	3300021168	Soil	VRETENMSAQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRSSSDEEIAIDLAQVVAIATAQKFVTLTHGPLMEGEIHSSKFMSERLPLMNERECDYEDNGIRAWFSASYGDAHIRFARS
Ga0210406_106096862	3300021168	Soil	VNTLTSNADTIRQESFYLEYKVALKRSLTRVTGTEAVTIELPFKQVAHWRQQQPDRYLTDEEIAIELTQAVAIATADRFVVLTQCPIREGEIHSGTLLSQPLFVMNERDCDYEDDGIRAWFVA
Ga0210406_107423382	3300021168	Soil	FEVTPKGTLTRATGRETVAIELPAKHVADWKLERPDRYLNDEEIAIELTQGAAIAAADRFVVLTQQPLKEREIHSARFLPERLLIMNERDCDYEDNGIRAWFIGAGVLT
Ga0210400_100781321	3300021170	Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAKHVSDWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHKRECDYEDNGIRAWFIGAGVLT
Ga0210408_100416471	3300021178	Soil	MNTLTSKADTIRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCDYEDDGIRAW
Ga0213872_100623012	3300021361	Rhizosphere	MNYTLTQKTDTMSQEFFYLEYKVTPKRTLTRVTGAEAVTIELPFKQVAHWKQQQPDRYLTDEEIAVELTQPVAIATADRFVVLTQRPIKEREIHSGRLLPQPFFVMNERDCDYEDDGIRAWFVA
Ga0213876_100065512	3300021384	Plant Roots	MSEQFFYIQYKVTPRRTLARGTGSEAITIELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSAMPERDCDYEDDDIRAWFVA
Ga0210387_100860714	3300021405	Soil	MNTLTSKADTIRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCDYEDDG
Ga0210384_117966541	3300021432	Soil	QFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRSSSDEEIAIDLAQVVAIAAAQKFVTLTHSPLKEGEIHLSKFMSERLPLMNERECDYEDNGIRAWFSA
Ga0213879_101023101	3300021439	Bulk Soil	GTEAVTIELPFKQVTHWKQQQPDRYLTDEEIAVELTQPVAIATADRFVVLTQRPIKEREIHSGRLLPQPFFVMNERDCDYEDDGIRAWFVA
Ga0213878_101123761	3300021444	Bulk Soil	MSQPFLYVQYKVTPKRTLARATGIEAVAIELPFKHVARWKHQQPDRYLTDEEIAIELTQAIAVATADRFVVLTPRPIKEQEIHSGRLLSGRLFIMSERDC
Ga0210410_107742642	3300021479	Soil	MNLMNTLTSKADAMRREFFYLEYKVTPKRGLTRVTGAEAVTIELPFKQVAHWKQQQPERYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEQEIHSASVLSQPVFVMEERDCDYEDDGIRAWFVA
Ga0210409_107462251	3300021559	Soil	ADTIRRDFFHLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCDYEDDGIRAWFVA
Ga0210409_110599702	3300021559	Soil	AFDPKTAIMSQQFLYVQFKVTPKGTLTRATGSETVAIELPAKHVADWKLQRPGRYLTDEEIAIELTQGVATGTADRFVVLTHRPLKEREIHSAGFLPDRLPIMNERDCDYEDNGIRAWFIISLCRRQLLQP
Ga0126371_102773893	3300021560	Tropical Forest Soil	MSEQFFYIQYKVTPRRTLTRGTGNEAITIELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSAMPERDCDYEDDDIRAWFVA
Ga0212123_1000099571	3300022557	Iron-Sulfur Acid Spring	MNTLTSKADAMRQEFFYLEYKVTPKRSLTRVTGTEAITIELPFTQVAHWRQQQPERYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEQEIHSASVLSQPVFVTEERDCDYEDDGIRAWFVA
Ga0212123_1000290211	3300022557	Iron-Sulfur Acid Spring	MSAQFVYLQFNVTPKGSLSRGCGNGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEREIHSSKFMSERLPLMNERECDYEDNGIRAWFSAQHD
Ga0179589_100163073	3300024288	Vadose Zone Soil	MRQESFYLEYKVSPKRTLTRATGNEAVTIELPAEHVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDGI
Ga0179589_100736743	3300024288	Vadose Zone Soil	MSQQFLYVQFKVTPKGTLARASGSETVAIELPVKDVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTQKPLKEREIHSARFLPEHLAIMNERDCDYEDNGIRAWFMGSGVLT
Ga0207685_100988953	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFLYVQFKVTPKGTLTRATGRDTVAIELPAEHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT
Ga0207693_102360521	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFIYLQFRVAPKKTLTRTTGSETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMHERECDYEDNGIRAWFIGAGVLT
Ga0207693_104148481	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNTLTSKADTIRRDFFYLEYKVTPKLTLARATGNEAITIELPADRVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLAQRLFVMHERDCD
Ga0207664_106143381	3300025929	Agricultural Soil	AFASRAFDPKTAIMSQQFIYLQFRVAPKKTLTRTTGSETVAIELPAKHVADWKLQRPDRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPSMDERECDYEDNGIRAWFIGSGVLT
Ga0207665_105128141	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSQQFLYVQFKVTPKGTLTRATGSETVAIELPAKHVADWKRQRPGRHLTDEEIAIELTQGVAITTADRFVVLSHDPLKEQEIHSGRFLPERLPVMDERECDYEDNGIRAWFIGAGVLT
Ga0209729_10024792	3300027061	Forest Soil	MSQQFIYLQFRVAPKKTLTRTTGSETVAIELPLEHVTGWKLRHPGRYLTDKEIAIELTQGVAIAAADRFVVLSHDPLKEQEIHSGTVLSNLLPIVNERDCDYEDDGIRAWFIISLCRRQLLQP
Ga0209729_10152781	3300027061	Forest Soil	MSEQFFYIQYKVTPRRTLNRATGNEAITIQLPVKHVVDWKLQQPDRYLTDEEIAIELTQAVAVATADRFVVLTPRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA
Ga0209729_10223611	3300027061	Forest Soil	MRLFGPKTGTISQQFLYVQFKVTPKGTLTRATGSETVAIELPAKHVADWKLQLPGRYLTDEEIAIELTQGVATAAADRFVVLTHRPLKEWKSTQPRFLPERLSVMDERECEYKDNGIRAWFIGSGVLT
Ga0209729_10294361	3300027061	Forest Soil	YAFARPAFDPKTGTMSQQFLYGQFKVTPKGTLTRATGSETVAVELPVRHVADWKLQRPARYLTDEEIAIELTQGIAIAVADRFVVLTGDPLKEREIHSARFLPERLPILNERDCDYEDNAIRAWFIGPGVLI
Ga0209731_10175112	3300027326	Forest Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAEHVVNWKQQHPGRYLIDEEIAIELTQGVAIAAADRFVVLSHDPLKEQEIHSARFLPERLPVMDERECDYEDNGIRA
Ga0209622_10281542	3300027502	Forest Soil	MSQQFLYVQFKVTPKGILTRANGSETLAIELPVKHVADWKLRQPGRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLPIMNERDCDYEDNGIKAWFIGLRVLI
Ga0209622_10302042	3300027502	Forest Soil	MSQQFRYGQFKVTPKGTLTRATGSETVAVELPVRHVADWKLQRPARYLTDEEIAIELTQGVAIAAADRFVVLSHDPLKEQEIHSARFLPERLPVMDERECDYEDNGIRAWFIISLCRRQLLQP
Ga0209622_10358262	3300027502	Forest Soil	ETMRQEFFYLEYKVTPKLTLTRATGNAAVTIELPADHVVDWKHQQPDRYLTDEEIAIELTQAVAIATADRFVVLTHRPIKEQEIHSGRLLSERLFVMHERDCDYEDDGIRAWFVA
Ga0209622_10377402	3300027502	Forest Soil	MSEQFFYIQYKVTPRRTLNRATGNEAITIQLPVKHVVDWKLQQPDRYLTDEEIAIELTQAVAVATADRFVVLTPRPIKEQEIHSGRLLSQRLFVVHE
Ga0209420_10425762	3300027648	Forest Soil	MNTLTSKADAMGQQFFYLEYKVTPKRSLTRVTGTEAVTIELPFKQVAHWRQQQPERYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEQEIHSASVLSQPVFVMEERDCDYEDDGIRAWFVA
Ga0209275_101296273	3300027884	Soil	KGKLECFALLQSAKAENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA
Ga0209380_101416393	3300027889	Soil	MVPHQIPIFSLWLRQPHKGKLECFALLQSAKAENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA
Ga0308309_100387251	3300028906	Soil	MFRTPQSAKAENMSAQFVYLQFKVTPKGSLSRSCGSETIAIELPSKHVTDWKLERPGRSSCDEEIAIDLAQVVAIAAAQKFVTLTHRPLREGEIHSSKFMSERLSLMNERECDYEDNGIRAWFSA
Ga0222749_108392051	3300029636	Soil	QIPSLCRNNRTQSNQHSPPSAKAENMSAQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEREIHSSKFMSQRLPLMNERECDYEDNGIRAWFSAEQD
Ga0138296_17868792	3300030923	Soil	MNTLTSNADTIRQESFYLEYKVTPKRSLTRVTGTEAVTIELPFKQVAHWRQQQPDRYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEGEIHSGTLLSQPLFVMNERDCDYEDDGIRAWFVA
Ga0138301_15631842	3300031022	Soil	VRETENMSAQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIATAQKFVTLTHGPLMEGEIHSSKFMSERLPLMNERECDYEDNGIRAWFSA
Ga0138301_16855522	3300031022	Soil	MNTLTSNADTIRQESFYLEYKVTPKRSLTRVTGTEAVTIELPFKQVAHWRQQQPDRYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEGEIHSGTLLSQPLFVINDRDCDYEDDGIRAWFVA
Ga0170834_1030756781	3300031057	Forest Soil	MRQEFFYVEYKVTPKGTLTRATGNEAVTIELPAEHVVDWKHQQPDRYLTDEEIAIELTEAVAVATADRFVVLTHRPIKEQELHSARLLSQRLFVVHERDCDYEDGSIRAWFVA
Ga0170824_1251388031	3300031231	Forest Soil	TENMSAQFVYLQFYVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPARSSSDEEIAIDLAQVVAIAAAQKFVTLTHGPLMEREIHSSEFMSERLPLMNERECDYEDNGIRAWFSASYGDAHILFARS
Ga0307476_100504821	3300031715	Hardwood Forest Soil	MNTLTSKADTMIQEFFYLEYKVTPKQTLTRATGNEAVTIELPAEHLVDWKNQQPDRYLTDEEIAIELTQAVAVATADRFVVLTHRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA
Ga0307476_101027591	3300031715	Hardwood Forest Soil	MFHSPPERAKTENMSAQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEREIHSSKFMSERLPLMNERECDYEDNGIRAWFSA
Ga0307476_102200303	3300031715	Hardwood Forest Soil	MSQQFLYGQFKVTPKGTLTRATGSETVAVELPVRHVADWKLQRPARYLTDEEIAIELTQGIAIAVADRFVVLTGDPLKEREIHSARFLPERLPILNERDCDYEDNAIRAWFIGPGVLI
Ga0307476_106444741	3300031715	Hardwood Forest Soil	VHPRGTLTRATGSETVAVELPVRHVADWKLQRPARYPTDEEVAIELTQGVAIAVADRFVVLTHRALKEREIHSARFLPEHPAVMNERDCDYEDNGIRAWFMGSGVLT
Ga0307476_110777171	3300031715	Hardwood Forest Soil	MSQQFLYVQFKVTPKGTLTRATGRETVAIELPAEHVVNWKQQHPGRYLIDEEIAIELTQGVAITAADRFVVLSHDPLKEQEIHSGTVLSSLLPIMNERDCDYEDDGIRAWFIGSGVLT
Ga0307474_100434477	3300031718	Hardwood Forest Soil	VHPRGTLTRATGSETVAVELPVRHVADWKLQRPARYPTDEEVAIELTQGVAIAVADRFVVLTHRALKEREIHSARFLPEHPAVMNERDCDYEDNGIRARLMGSGVLT
Ga0307474_100959003	3300031718	Hardwood Forest Soil	MSEQFFYIQYKVTPRRTLNRATGNEAITIQLPVKHVVDWKLQQPDRYLTDEEIAIELTQAVAVAAADRFVVLTHRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA
Ga0307474_101681481	3300031718	Hardwood Forest Soil	MFRTPPERAKTEKMSAQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEREIHSSKFMSERLPLMNERECDFEDNGIRAWFSA
Ga0307474_109821302	3300031718	Hardwood Forest Soil	FACRAFDPRTGTMSQQFLYVQFKVRPKGTLTRANGIETVAIELPFNYVADWKLRQRGRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLSVMDERECDYEDNGIRAWFIGSGVLT
Ga0307474_115075811	3300031718	Hardwood Forest Soil	MSQQFPYVQFRVAPKKTLTRITGSEAVAVEHVTGWKLRHPGRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSATFLLERLPVMDERECGYEDNGIRAWFIISLCRRQLLQ
Ga0307477_100616733	3300031753	Hardwood Forest Soil	MRQEFFYLEYKVTPELPLTRATGNEAITIELPADHVVDWKHQQPDRFLTDEEIAIELTQAVAIATADKFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDDGIRAWFVA
Ga0307477_100780451	3300031753	Hardwood Forest Soil	MSHQFLYVQFKVTPKGPLARATGNERVAIELPFKHVADWKLERPGRNLSDEEIAIELGQVVAIAAADRFVALTHRPLMEGEIHSATFLPQRIPVMNERHCDYEDNGIRAWFIA
Ga0307475_102582602	3300031754	Hardwood Forest Soil	MRQEFFYLEYKVTPELPLTRATGNEAITIELPADHLVDWKHQQPDRFLTDEEIAIELTQAVAIATADKFVVLTHRPIKEQEIHSGRLLSQRLFVMHERDCDYEDDGIRAWFVA
Ga0307475_102633632	3300031754	Hardwood Forest Soil	MSQQFLYVQFKVRPKGTLTRANGIETVAIELPFNYVADWKLRQRGRYLTDEEIAIELTQGVAIAAADRFVVLSHDPLKEREIHSGTVLSNLLPIMNERDCDYEDDGIRAWFIGSGVLT
Ga0307475_105381072	3300031754	Hardwood Forest Soil	ATGNEAITIQLPVKHVVDWKLQQPDRYLTDEEIAIELTQAVAVAAADRFVVLTHRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA
Ga0307475_113421401	3300031754	Hardwood Forest Soil	LSRGCGSGTIAIELPSKHVTDWKLERPGRSSSDEEIAIDLAQVVAIATAQKFVTLTHGPLMAGEIHSSKFMSQRLPLMNERECDYEDNGIRAWFSA
Ga0307478_100582952	3300031823	Hardwood Forest Soil	MFRTPPERAKTEKMSTQFVYLQFNVTPKGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQKFVTLTHRPLMEREIHSSKFMSERLPLMNERECDFEDNGIRAWFSA
Ga0307478_102539602	3300031823	Hardwood Forest Soil	MIQEFFYLEYKVTPKQTLTRATGNEAVTIELPAEHLVEWKHQQPDRYLTDEEIAIELTQAVAVATADRFVVLTHRPIKEQEIHSGRLLSQRLFVVHERDCDYEDDGIRAWFVA
Ga0307478_112841891	3300031823	Hardwood Forest Soil	KGSLSRGCGSGTIAIELPSKHVTDWKLERPGRRSSDEEIAIDLAQVVAIAAAQQFVSLTHRPLMERDIHSSKFMSERLPLMNERECDYEDNGIRAWFSA
Ga0307479_100537373	3300031962	Hardwood Forest Soil	MSLPFLYVEFKVTPKGRLACVTGGGRVAIQLPFDQVADWKLRQPDRYLTDEEIAVELTQEVAIGAADRFVALTHRPIKEREIHSARFLPQGLFVMSERDCDYEDNGVRAWFIA
Ga0307479_108185432	3300031962	Hardwood Forest Soil	MSQQFLYVQFKVRPKGTLTRANGIETVAIELPFNYVADWKLRQRGRYLTDEEIAIELTQGVAIAAADRFVVLTHRPLKEREIHSARFLPERLSVMDERECDYEDNGIRAWFIGSGVLT
Ga0307479_117851221	3300031962	Hardwood Forest Soil	TRATGSETVAVELPVRHVADWKLQRPARYPTDEEVAIELTQGVAIAVADRFVVLTHRALKEREIHSARFLPEHPAVMNERDCDYEDNGIRAWFMGSGVLT
Ga0307479_118411831	3300031962	Hardwood Forest Soil	MRQGFYYLEYKVTPKRSLTRVTGTEAVTIELPFKQVAHWRQQQPDRYLTDEEIAIELTQAVAIATADRFVVLTQRPIKEREIHSGTLLSQPLFVMNERDCDYEDDGIRAWFAA
Ga0335072_103363591	3300032898	Soil	MSEQFFYIQYKVTPRRTLTRGTGNEAITVELPVKHVIDWKLQQPDRYLTDEEIAIELTQAVAIATADRFVVLTPRPIKAQEIHSGRLLSQCFSAMPERDCDYEDDDIRAWFVA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099642

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences