NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099720

Metagenome / Metatranscriptome Family F099720

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099720
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 44 residues
Representative Sequence MFIETYYDERAAVPGSTSEPMIPYPELSGEELAVWQEYLPMRRE
Number of Associated Samples 84
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 93.20 %
% of genes from short scaffolds (< 2000 bps) 95.15 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.087 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(23.301 % of family members)
Environment Ontology (ENVO) Unclassified
(38.835 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.544 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.50%    β-sheet: 0.00%    Coil/Unstructured: 87.50%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00199Catalase 7.77
PF07883Cupin_2 1.94
PF00486Trans_reg_C 1.94
PF00582Usp 1.94
PF04392ABC_sub_bind 1.94
PF02586SRAP 1.94
PF12697Abhydrolase_6 0.97
PF13518HTH_28 0.97
PF02321OEP 0.97
PF13401AAA_22 0.97
PF03992ABM 0.97
PF16656Pur_ac_phosph_N 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0753CatalaseInorganic ion transport and metabolism [P] 7.77
COG1538Outer membrane protein TolCCell wall/membrane/envelope biogenesis [M] 1.94
COG2135ssDNA abasic site-binding protein YedK/HMCES, SRAP familyReplication, recombination and repair [L] 1.94
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.94

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.09 %
UnclassifiedrootN/A2.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459016|G1P06HT01B0VY9All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100574213All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1001467All Organisms → cellular organisms → Bacteria → Proteobacteria2805Open in IMG/M
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1004774All Organisms → cellular organisms → Bacteria1566Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10127359All Organisms → cellular organisms → Bacteria620Open in IMG/M
3300000837|AP72_2010_repI_A100DRAFT_1032612All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300000955|JGI1027J12803_102581843All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300003987|Ga0055471_10084569All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300004268|Ga0066398_10163240All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300004633|Ga0066395_10730371All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300005168|Ga0066809_10240250All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300005294|Ga0065705_10957768All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300005332|Ga0066388_101847278All Organisms → cellular organisms → Bacteria1076Open in IMG/M
3300005445|Ga0070708_100323598All Organisms → cellular organisms → Bacteria1452Open in IMG/M
3300005447|Ga0066689_10900783All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300005561|Ga0066699_10299841All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.1144Open in IMG/M
3300005713|Ga0066905_102099850All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300005764|Ga0066903_105629103All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300006173|Ga0070716_101356636All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300006175|Ga0070712_100610869All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300006194|Ga0075427_10076407All Organisms → cellular organisms → Bacteria601Open in IMG/M
3300006573|Ga0074055_11231337All Organisms → cellular organisms → Bacteria911Open in IMG/M
3300006846|Ga0075430_100697865All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300006852|Ga0075433_11226718All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300006852|Ga0075433_11928736All Organisms → cellular organisms → Bacteria506Open in IMG/M
3300006854|Ga0075425_100857435All Organisms → cellular organisms → Bacteria1039Open in IMG/M
3300006904|Ga0075424_101993341All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300006969|Ga0075419_10288212All Organisms → cellular organisms → Bacteria1105Open in IMG/M
3300009100|Ga0075418_10108957All Organisms → cellular organisms → Bacteria2941Open in IMG/M
3300009147|Ga0114129_10662658All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300009147|Ga0114129_13402529All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300009157|Ga0105092_10072860All Organisms → cellular organisms → Bacteria1862Open in IMG/M
3300009162|Ga0075423_10994286All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300009792|Ga0126374_11193952All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300009809|Ga0105089_1011540All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300009817|Ga0105062_1092223All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300009820|Ga0105085_1041753All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300010043|Ga0126380_10378411All Organisms → cellular organisms → Bacteria1042Open in IMG/M
3300010043|Ga0126380_11638276All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300010046|Ga0126384_10597625All Organisms → cellular organisms → Bacteria965Open in IMG/M
3300010046|Ga0126384_12124466All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300010046|Ga0126384_12314734All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300010047|Ga0126382_10478570All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300010047|Ga0126382_11311449All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300010047|Ga0126382_11357258All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300010335|Ga0134063_10645740All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300010358|Ga0126370_11066379All Organisms → cellular organisms → Bacteria742Open in IMG/M
3300010359|Ga0126376_10843454All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300010366|Ga0126379_12522554All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300010376|Ga0126381_101207851All Organisms → cellular organisms → Bacteria1093Open in IMG/M
3300010376|Ga0126381_102858927All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300010376|Ga0126381_103780981All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → unclassified Patescibacteria group → Patescibacteria group bacterium591Open in IMG/M
3300010398|Ga0126383_12266619All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300011437|Ga0137429_1048270All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1243Open in IMG/M
3300012039|Ga0137421_1121337All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300012199|Ga0137383_11317371All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300012202|Ga0137363_10616440All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300012205|Ga0137362_10630553All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium923Open in IMG/M
3300012206|Ga0137380_10359998All Organisms → cellular organisms → Bacteria1297Open in IMG/M
3300012208|Ga0137376_10947426All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300012208|Ga0137376_11032825All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300012285|Ga0137370_10918437All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300012351|Ga0137386_10977903All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300012353|Ga0137367_10660594All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium HGW-BRC1-1729Open in IMG/M
3300012359|Ga0137385_10523486All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300012361|Ga0137360_10946031All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300012362|Ga0137361_10592488All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1016Open in IMG/M
3300012532|Ga0137373_10885308All Organisms → cellular organisms → Bacteria656Open in IMG/M
3300012582|Ga0137358_10808744All Organisms → cellular organisms → Bacteria622Open in IMG/M
3300012685|Ga0137397_10157513All Organisms → cellular organisms → Bacteria → Proteobacteria1684Open in IMG/M
3300012685|Ga0137397_10644826All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300012685|Ga0137397_10646302All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300012922|Ga0137394_10074056All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2841Open in IMG/M
3300012930|Ga0137407_10200696All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1788Open in IMG/M
3300012930|Ga0137407_12205859All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012948|Ga0126375_10261774All Organisms → cellular organisms → Bacteria1178Open in IMG/M
3300012948|Ga0126375_10359307Not Available1037Open in IMG/M
3300012948|Ga0126375_10984067All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300012948|Ga0126375_11873316All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012971|Ga0126369_13692525All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300012975|Ga0134110_10552133All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300016445|Ga0182038_10969198All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300021081|Ga0210379_10297631All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300021560|Ga0126371_10936149All Organisms → cellular organisms → Bacteria1009Open in IMG/M
3300021560|Ga0126371_11394381All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300026524|Ga0209690_1209323All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300026537|Ga0209157_1263463Not Available660Open in IMG/M
3300027527|Ga0209684_1059360All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300027646|Ga0209466_1027321All Organisms → cellular organisms → Bacteria1176Open in IMG/M
3300027646|Ga0209466_1059158All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300027874|Ga0209465_10522837All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300027907|Ga0207428_10850277All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300027909|Ga0209382_10099401All Organisms → cellular organisms → Bacteria3411Open in IMG/M
3300029636|Ga0222749_10774309All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300031474|Ga0170818_101929849All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300031720|Ga0307469_10179833All Organisms → cellular organisms → Bacteria1625Open in IMG/M
3300031820|Ga0307473_11277561All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300032174|Ga0307470_10957046All Organisms → cellular organisms → Bacteria677Open in IMG/M
3300032180|Ga0307471_101247836All Organisms → cellular organisms → Bacteria906Open in IMG/M
3300032205|Ga0307472_100650349All Organisms → cellular organisms → Bacteria939Open in IMG/M
3300033289|Ga0310914_11386368All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300033433|Ga0326726_10656927All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1010Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil23.30%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.42%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere12.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil8.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.91%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.91%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.97%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.97%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.97%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.97%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.97%
Switchgrass, Maize And Mischanthus LitterEngineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459016Litter degradation ZMR2EngineeredOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000596Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TCEnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000837Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100EnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300003987Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2EnvironmentalOpen in IMG/M
3300004268Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBioEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006194Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1Host-AssociatedOpen in IMG/M
3300006573Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009809Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40EnvironmentalOpen in IMG/M
3300009817Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20EnvironmentalOpen in IMG/M
3300009820Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011437Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2EnvironmentalOpen in IMG/M
3300012039Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT534_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026537Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027646Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2ZMR_004948902170459016Switchgrass, Maize And Mischanthus LitterMFIETYYDDRATVPGSTSEPMIPYPELSGEELEVWRKYLPMRRQIRNLD
INPhiseqgaiiFebDRAFT_10057421323300000364SoilMFIETYYDERAAVPGSTSEPMIPYPELLGEELAVWEEYL
KanNP_Total_noBrdU_T14TCDRAFT_100146743300000596SoilMFIETYYDDRAAVPGSTSEPMIPYPELSGEKLTVWQEYLPIKRPIRNLY
KanNP_Total_noBrdU_T14TCDRAFT_100477413300000596SoilMFIETYYDDRATVPGSTSEPMIPYPELSGEELEVWRKYLPMRRQIRN
AF_2010_repII_A1DRAFT_1012735933300000597Forest SoilMFIETYYDERATVPGSTNEPMIPYPELSGEELEVWRKYLPIRRPIR
AP72_2010_repI_A100DRAFT_103261233300000837Forest SoilMFIETYYDERATVPGSTNEPMIPYPELSGEELEVWR
JGI1027J12803_10258184313300000955SoilMFIETYYDERAPVPGSTIERMIPYPELSGEELTVWQEYLPIN
Ga0055471_1008456933300003987Natural And Restored WetlandsMFIETYYDDRAALPAGTNVPQIPYPELSGEALTVWRRYLPMRRQIRNLH
Ga0066398_1016324013300004268Tropical Forest SoilMFIETYYDDRAAVPASTGEPIIPFPELSGDELTVWRNYLP
Ga0066395_1073037113300004633Tropical Forest SoilMFIQTYYDDRAAVSGSASEPIIPHPELSGEELKVWRNYLPIR
Ga0066809_1024025023300005168SoilMFIETYYDERAAVPGSTSEPMIPYPELLGEELAVWQEYLP
Ga0065705_1095776813300005294Switchgrass RhizosphereMFIETYYDERAAVPVTTSEPMIPYPELSGEELAVWQAYLPIRREIRKP
Ga0066388_10184727823300005332Tropical Forest SoilMFIETYYDDRVAVSGSASEPIIPYPELSGEELKVWRNYLPIRREIRNLYTQRF
Ga0070708_10032359813300005445Corn, Switchgrass And Miscanthus RhizosphereMFIETYYDERVPVPGSTSEPLIPYPELSGEELAVWQEYLPIRSDM
Ga0066689_1090078323300005447SoilMFIETYYDERVPVPATPREPMMPYPELSGEELTVWRKYLP
Ga0066699_1029984123300005561SoilMFIETYYDETAAVPATTSEPTIPYPELSGEELTVWRKYLPIRRQVENLRS
Ga0066905_10209985023300005713Tropical Forest SoilMFVEIYYDDRAPVPGSASEPIIPYLELSGEQLTVWRNYLPM
Ga0066903_10562910313300005764Tropical Forest SoilMFIETYYDERATVPGSTNEPMIPYPELSGEELEVWRKYL
Ga0070716_10135663613300006173Corn, Switchgrass And Miscanthus RhizosphereMFIETYYDERAPVPGSTSEPLIPYPELSGEELAVWQ
Ga0070712_10061086923300006175Corn, Switchgrass And Miscanthus RhizosphereMFIETYYDERAAVPPTTSEPMIPYPELSGEELAVWQEYLP
Ga0075427_1007640713300006194Populus RhizosphereMFIETYYDERAAVPGSTSEPMIPYPELSGEELAVWQEYLPMRREIRNLY
Ga0074055_1123133713300006573SoilMFIETYYDERAAVPVITSEPMIPYPELSGEELAVWQEYLP
Ga0075430_10069786513300006846Populus RhizosphereMFIETYYDERAAVPASTSEPVIPYPELSGEELAVWQEYLPMRREIRK
Ga0075433_1122671813300006852Populus RhizosphereMFIETYYDERAAVPGSTSEPVIPYPELSGEELAVWQEYLPMRREIRN
Ga0075433_1192873623300006852Populus RhizosphereMFKETYYDDRAAVPGSSSERMIPYPELSGEELTVWQEYLPIKRPIRNL
Ga0075425_10085743513300006854Populus RhizosphereMFIETYYDERAPVPGSTSEPLIPYPELSGQELAVWQEYLPVRREMRNLYS
Ga0075424_10199334113300006904Populus RhizosphereMFIETYYDERAAVPATTSEPMIPYPELLGEELAVWEEYLPMRREIRNLY
Ga0075419_1028821213300006969Populus RhizosphereMFIETYYDERAAVPGSTSEPMIPYPELSGEELAVWQEYLPMRRE
Ga0075418_1010895733300009100Populus RhizosphereMFIETYYDERAAVPGSTSEPMIPYPELSGEELAVWQEYLPMRREIR
Ga0114129_1066265833300009147Populus RhizosphereMFIETYYDDRATVPGSTSEPMIPYPELSGQELEVWRKYL
Ga0114129_1340252913300009147Populus RhizosphereMFIETYYDERVPVPGSTSEPLIPYPELSGEELTEE*
Ga0105092_1007286033300009157Freshwater SedimentMFIETYYDDRAVPGSTSEPMIPYPELSGEKLTVWQEYLPIKRPIRNLSSPF
Ga0075423_1099428623300009162Populus RhizosphereMFIETYYDERAPVPGSTSEPLIPYPELSGQELAVWQEYLPVRREMRNLY
Ga0126374_1119395213300009792Tropical Forest SoilMFIETYYDDRAPVPGSTSEPIIPYPELSGEQLTMWRNYLPMRREIRNLD
Ga0105089_101154013300009809Groundwater SandMFIETYYDDRAAVPGSTSEPMIPYPELSGEKLTVWQEYLPIKR
Ga0105062_109222313300009817Groundwater SandMFIETYYDDRATVPGSTSEPMIPYPELSGEELEVWRKYLPMRRQIRNLDSR
Ga0105085_104175333300009820Groundwater SandMFIETYYDDRAAVPGSTSEPVIPYPELSGEELTVWRKYLPMRRQIRKVS
Ga0126380_1037841113300010043Tropical Forest SoilMFIETYYDERAAVPASTSEPMIPYPELSGEELAVWQEYLPM
Ga0126380_1163827613300010043Tropical Forest SoilMFIETYHDDRATALGSTSEPMIPYPELSGEELEVWRKYLPLRRQIRN
Ga0126384_1059762523300010046Tropical Forest SoilMFIETYYDDRAAVSGSASEPIIPYPELSGEELKVWRNYLPIRREIRNLYT
Ga0126384_1212446623300010046Tropical Forest SoilMFIETYHDDRAAAPGSTSEPIIPFPELSGDELTVWRNYLP
Ga0126384_1231473413300010046Tropical Forest SoilMFIETYYDERATVPGSTNEPMIPYPELSGEELEVWRKYLPIRRP
Ga0126382_1047857023300010047Tropical Forest SoilMFIETYYDDRAPVPGSASEPIIPYPELSGEQLTVWRNYLPMRR
Ga0126382_1131144913300010047Tropical Forest SoilMFTETYHDNRAAVPSGSSEPMISILRIVGEALTVWQEYLPIRRPIRNLY
Ga0126382_1135725823300010047Tropical Forest SoilMFIETYYDERALVPCSMSEPVIPYPELSGEELTAWRDYLPIRRPVA
Ga0134063_1064574013300010335Grasslands SoilMFIETYYDDRAAAVSGSTREPTIPYPELSGEELTV*
Ga0126370_1106637923300010358Tropical Forest SoilMFIETYYDYRAPVPGGTSEPIIPYPELSGEQLTVWRNYLPMRREIRNLY
Ga0126376_1084345413300010359Tropical Forest SoilMFIETYHDERAAVPGSTSEPVIPYPELSGEELTVW
Ga0126378_1079195023300010361Tropical Forest SoilMFIETYHDDRAAVPASTSEPIIPYPELSGEELTMWRNYLPI
Ga0126379_1252255413300010366Tropical Forest SoilMFIETYHDDRATALGSTSEPMIPYPELSGEELEVWRKYLPLRRQIRNL
Ga0126381_10120785113300010376Tropical Forest SoilMFIETYYDDRATVRGSTSEPMIPYPELSGEELEVWRKYLPIRRPIRNLDSR
Ga0126381_10285892713300010376Tropical Forest SoilMFIETYYDERALVPCSMSEPVIPYPELSGEELTAWRDYLPIRRPVANFASWFN
Ga0126381_10378098123300010376Tropical Forest SoilMFIETYYDERAAVLTSTSEPMIPYPELSGKELAVWQEYLPI
Ga0126383_1226661913300010398Tropical Forest SoilMFIETYHDDRATALGSTGEPIIPYPELSGEELEVWRKYLPLRR
Ga0137429_104827043300011437SoilMFIETYYDDRATVPAGTSAPPIPYPELSGDELTVWQQYLPM
Ga0137421_112133733300012039SoilMFIETYYDDRATVPAGTSAPPIPYPELSGDELTVW
Ga0137383_1131737113300012199Vadose Zone SoilMFIETYYDERAAVPATTSEPMIPYPELLGEELAVWQEYLPMRREIRKPFSR
Ga0137363_1061644023300012202Vadose Zone SoilMFIETYYDERAAVFASTSEPMIPYPELSGEELTVWQEYLPMRRQI
Ga0137362_1063055313300012205Vadose Zone SoilMFIETYYDDRAAVSGNTGEPVIPYPELSGEELTVWRNYL
Ga0137380_1035999823300012206Vadose Zone SoilMFIETYYDETAAVPATTSEPTIPYPELSGEELTVWRKYLPIRRQVENLRS*
Ga0137376_1094742633300012208Vadose Zone SoilMFIETYYDERAAVPATTSEPMIPYPELLGEELAVWQEYLPMRREIRK
Ga0137376_1103282513300012208Vadose Zone SoilMFIETYYDDRAAVSGSTSEPTIPYPELSGEELTVWRK
Ga0137370_1091843723300012285Vadose Zone SoilMFIETYYDDRAAVPGGTSEPIIPYPELSGEKLTVWQEY
Ga0137386_1097790313300012351Vadose Zone SoilMFIETYYDDRAAAVSDSTSEPMIPYPELSGEKLTVW
Ga0137367_1066059413300012353Vadose Zone SoilMFIETYYDERAALPASTSEPMIPYPELSGEELTVWQEY
Ga0137385_1052348613300012359Vadose Zone SoilMFIETYYDDRAAVPGSTSEPMIPYPELSGEKLTV*
Ga0137360_1094603113300012361Vadose Zone SoilMFIETYYDERAPVPGNTSEPMIPYPELSGEALTVWRKYLPMRREIENLDSR
Ga0137361_1059248813300012362Vadose Zone SoilMFIETYYDDRAAVPGSTSEPMIPYPELSGEKLAVWQEYLPIRRPI
Ga0137373_1088530813300012532Vadose Zone SoilMFIETYYDERAPVHGSTSEPVIPYPELSGEALEVWRKYLPMRRPIENF
Ga0137358_1080874413300012582Vadose Zone SoilMFVETYYDARVLVPVGGNEPLIPYPELRGEELTVWRKYLPKQTPLENLRF
Ga0137397_1015751333300012685Vadose Zone SoilMFIETYYDERAAVPGSTSEPMIPYPELSGEELTVWRE
Ga0137397_1064482613300012685Vadose Zone SoilMFIETYYDERAAVPVTTSEPMIPYPELSGEELAVWQE
Ga0137397_1064630213300012685Vadose Zone SoilMFKETYYDDRAAVPGSLSERMIPYPELSGEELTVARILAD*
Ga0137394_1007405693300012922Vadose Zone SoilMFIETYYDDRATLPSSTSGPMIPYPELSGGELEVWRKYLPIR
Ga0137407_1020069623300012930Vadose Zone SoilMFIETYYDERAAVPASTSEPMIPYPELSGEELTVWQEYLPIR
Ga0137407_1220585913300012930Vadose Zone SoilMFIETYHDDRATVPGSTSEPMIPYPELSGEELEVWRKYLP
Ga0126375_1026177423300012948Tropical Forest SoilMFIETYYDDRAPVLGSTSEPVIPYPELSGEELRVWQKYLPMRRGIR
Ga0126375_1035930723300012948Tropical Forest SoilMFIETYYDDRAAVSGSASEPIIPYPELSGEELKVWRNYLPIRREIRNLYTQ
Ga0126375_1098406723300012948Tropical Forest SoilMFIETYYDDRVAVSGSASEPIIPYPELSGEELKVWRNYLPIRREIRNLY
Ga0126375_1187331613300012948Tropical Forest SoilMFIETYHDDRATVPARTSEPIIPYPELSGEELTVWRNYL
Ga0126369_1369252513300012971Tropical Forest SoilMFIETYYDDRAPVPGSASEPIIPYPELSGEQLTVWRNYLPMRREI
Ga0134110_1055213323300012975Grasslands SoilMFIETYYDERVPVPAMPRELMMFYPELSGEELTVWRKYLP
Ga0182038_1096919813300016445SoilMFIETYYDQRAPIPGSTSERTIPYPELSGEELAAWQEYLPIKREMGNLHSL
Ga0210379_1029763113300021081Groundwater SedimentMFIETYYDDRAAVPASTSERMIPYPELSGEKLTVWQEYLPIKRPIRNLYSP
Ga0126371_1093614923300021560Tropical Forest SoilMFIETYYDERAPVPSSTSEPVIPYPELLGEELTVWRNYLPMRREIKNLYTQF
Ga0126371_1139438123300021560Tropical Forest SoilMFIETYYDERATVRGSTTEPMIPYPELSGEELEVWRKYLPIRRPI
Ga0209690_120932323300026524SoilMFIETYYDDRAAVPGSTSEPMIPYPELSGEKLTVWQE
Ga0209157_126346313300026537SoilMFIETYYDDRAVATSTSEPVIPYPELSGEELTVWQKYLPIR
Ga0209684_105936013300027527Tropical Forest SoilMFIETYYDERAAVLMSASEPMIPYPELSGKELAVWREYLPIRREMR
Ga0209466_102732113300027646Tropical Forest SoilMFIETYYDDRVAVSGSASEPIIPYPELSGEELKVWRNYLPIRREIRNL
Ga0209466_105915813300027646Tropical Forest SoilMFIETYYDDRAAVLGSASEPIIPYPELSGEELKVWRNYLPIRREIRNL
Ga0209465_1052283713300027874Tropical Forest SoilMFIETYYDDRAPVPGSASEPIIPYPELSGEQLTVWRNYLPMRREIKNLC
Ga0207428_1085027713300027907Populus RhizosphereMFIETYYDERAAVPGSTSEPVIPYPELFGEELTVWREYLPM
Ga0209382_1009940113300027909Populus RhizosphereMFKETYYDDRAAIPSSLSERMIPYPELSGEALTVWREYL
Ga0222749_1077430913300029636SoilMFIETYYDDRAALPGSTSEPEIPYPELSGEALTVWQKY
Ga0170818_10192984913300031474Forest SoilMFIETYYDERTAVPASTNEPMIPYPELSGEELTVKKKIDKSR
Ga0307469_1017983343300031720Hardwood Forest SoilMFIETYYDDRAAVPGSTSETMILYPELSGEKLAVRQEYLAIRRDR
Ga0307473_1127756113300031820Hardwood Forest SoilMFIETYYDERAAVPGSTSEPMIPYPELLGEELAVWQEYLPIRREIRKP
Ga0307470_1095704613300032174Hardwood Forest SoilMFIETYYDERAPVPGSKSEPFIPYPELSGEELAVWQEYLPVRREMKNLYSP
Ga0307471_10124783613300032180Hardwood Forest SoilMFIETYHDDRATVPGSTSEPMIPYPELSGEELQVWRK
Ga0307472_10065034923300032205Hardwood Forest SoilMFIETYYDERAPVPGSTSEPLIPYPELFGEELAVWQE
Ga0310914_1138636813300033289SoilMFIETYYDERAPVPGSTSERMIPYPELSGEELTVWRKYLP
Ga0326726_1065692723300033433Peat SoilMFIETYYDDRATVGGASEPMIPYPELSGEELEVWRKYLPMRREIRNLDSRL

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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