Metagenome / Metatranscriptome Family F099730

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099730
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	58 residues
Representative Sequence	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEVTEVELDHERTSLN
Number of Associated Samples	86
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.49 %
% of genes near scaffold ends (potentially truncated)	35.92 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.252 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.097 % of family members)
Environment Ontology (ENVO)	Unclassified (50.485 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.47% β-sheet: 23.53% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00082	Peptidase_S8	1.94
PF07883	Cupin_2	0.97
PF01594	AI-2E_transport	0.97
PF14518	Haem_oxygenas_2	0.97
PF00583	Acetyltransf_1	0.97
PF12836	HHH_3	0.97
PF13578	Methyltransf_24	0.97
PF00903	Glyoxalase	0.97
PF00877	NLPC_P60	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.97
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.25 %
Unclassified	root	N/A	41.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	52.43 %
Unclassified	root	N/A	41.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.46 %
Unclassified	root	N/A	41.75 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	45.63 %
Unclassified	root	N/A	41.75 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.94 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.97 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	45.63 %
Unclassified	root	N/A	41.75 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.97 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.97 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.63 %
Unclassified	root	N/A	41.75 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.97 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.97 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.63 %
Unclassified	root	N/A	41.75 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.97 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.97 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.63 %
Unclassified	root	N/A	41.75 %
unclassified Gaiella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella	0.97 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	0.97 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	45.63 %
Unclassified	root	N/A	41.75 %
Gaiella sp. SCGC AG-212-M14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	0.97 %
Conexibacter sp. SYSU D00693	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. SYSU D00693	0.97 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.97 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.97 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004157\|Ga0062590_101273542	Not Available	722	Open in IMG/M
3300005093\|Ga0062594_100087169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1800	Open in IMG/M
3300005093\|Ga0062594_100563321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	986	Open in IMG/M
3300005104\|Ga0066818_1003905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	932	Open in IMG/M
3300005148\|Ga0066819_1015339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	596	Open in IMG/M
3300005163\|Ga0066823_10076243	Not Available	652	Open in IMG/M
3300005168\|Ga0066809_10124169	Not Available	651	Open in IMG/M
3300005356\|Ga0070674_101160893	Not Available	684	Open in IMG/M
3300005439\|Ga0070711_101126368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300005439\|Ga0070711_101953722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300005456\|Ga0070678_102192209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300005456\|Ga0070678_102412100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300005459\|Ga0068867_100299183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1326	Open in IMG/M
3300005526\|Ga0073909_10001866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6337	Open in IMG/M
3300005543\|Ga0070672_101129630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
3300005544\|Ga0070686_100042291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2853	Open in IMG/M
3300005548\|Ga0070665_100255987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1751	Open in IMG/M
3300005615\|Ga0070702_101704379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	524	Open in IMG/M
3300005718\|Ga0068866_10776556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300005719\|Ga0068861_102154902	Not Available	558	Open in IMG/M
3300006173\|Ga0070716_101068639	Not Available	642	Open in IMG/M
3300006237\|Ga0097621_101969859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300006358\|Ga0068871_100302975	Not Available	1403	Open in IMG/M
3300006572\|Ga0074051_11620464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300006579\|Ga0074054_11932057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	561	Open in IMG/M
3300006605\|Ga0074057_11178017	Not Available	640	Open in IMG/M
3300006881\|Ga0068865_100396899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1129	Open in IMG/M
3300006953\|Ga0074063_13895515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1076	Open in IMG/M
3300009148\|Ga0105243_10390212	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300009148\|Ga0105243_10705373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	984	Open in IMG/M
3300009545\|Ga0105237_11079006	Not Available	810	Open in IMG/M
3300010154\|Ga0127503_10215549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300010371\|Ga0134125_11432701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. SYSU D00693	753	Open in IMG/M
3300010375\|Ga0105239_11155082	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300010396\|Ga0134126_10393544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1611	Open in IMG/M
3300010400\|Ga0134122_10649904	Not Available	982	Open in IMG/M
3300010999\|Ga0138505_100003980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1457	Open in IMG/M
3300011119\|Ga0105246_10424887	Not Available	1110	Open in IMG/M
3300012209\|Ga0137379_11759016	Not Available	515	Open in IMG/M
3300012938\|Ga0162651_100091550	Not Available	514	Open in IMG/M
3300012955\|Ga0164298_10363448	Not Available	921	Open in IMG/M
3300012986\|Ga0164304_11363713	Not Available	580	Open in IMG/M
3300013296\|Ga0157374_10734386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1001	Open in IMG/M
3300013297\|Ga0157378_10557081	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300013308\|Ga0157375_11400216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	824	Open in IMG/M
3300013308\|Ga0157375_12555142	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300018027\|Ga0184605_10087681	Not Available	1363	Open in IMG/M
3300018027\|Ga0184605_10321649	Not Available	699	Open in IMG/M
3300018028\|Ga0184608_10142885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1027	Open in IMG/M
3300018054\|Ga0184621_10021576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1987	Open in IMG/M
3300018061\|Ga0184619_10003065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6115	Open in IMG/M
3300018071\|Ga0184618_10305602	Not Available	677	Open in IMG/M
3300018072\|Ga0184635_10397492	Not Available	522	Open in IMG/M
3300018073\|Ga0184624_10487286	Not Available	537	Open in IMG/M
3300018073\|Ga0184624_10503807	Not Available	526	Open in IMG/M
3300018076\|Ga0184609_10125677	Not Available	1168	Open in IMG/M
3300018076\|Ga0184609_10443353	Not Available	598	Open in IMG/M
3300018081\|Ga0184625_10193544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1066	Open in IMG/M
3300019873\|Ga0193700_1067435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300019886\|Ga0193727_1006147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4836	Open in IMG/M
3300019886\|Ga0193727_1134437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300020002\|Ga0193730_1029949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1577	Open in IMG/M
3300020004\|Ga0193755_1227053	Not Available	516	Open in IMG/M
3300020005\|Ga0193697_1122712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	603	Open in IMG/M
3300020016\|Ga0193696_1172565	Not Available	521	Open in IMG/M
3300021080\|Ga0210382_10256868	Not Available	765	Open in IMG/M
3300021363\|Ga0193699_10054459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → unclassified Gaiella → Gaiella sp. SCGC AG-212-M14	1554	Open in IMG/M
3300022756\|Ga0222622_10085834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1895	Open in IMG/M
3300025934\|Ga0207686_10337483	Not Available	1131	Open in IMG/M
3300025937\|Ga0207669_10721165	Not Available	821	Open in IMG/M
3300025937\|Ga0207669_11225752	Not Available	636	Open in IMG/M
3300025937\|Ga0207669_11278098	Not Available	623	Open in IMG/M
3300025940\|Ga0207691_10424436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300025940\|Ga0207691_11156964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300025940\|Ga0207691_11297622	Not Available	601	Open in IMG/M
3300025941\|Ga0207711_10968527	All Organisms → cellular organisms → Bacteria → Acidobacteria	790	Open in IMG/M
3300025972\|Ga0207668_10631514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	936	Open in IMG/M
3300026121\|Ga0207683_10467667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1163	Open in IMG/M
3300027821\|Ga0209811_10003023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5493	Open in IMG/M
3300028704\|Ga0307321_1069139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	688	Open in IMG/M
3300028708\|Ga0307295_10080759	Not Available	863	Open in IMG/M
3300028711\|Ga0307293_10104494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	899	Open in IMG/M
3300028713\|Ga0307303_10106935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	645	Open in IMG/M
3300028717\|Ga0307298_10041899	Not Available	1241	Open in IMG/M
3300028768\|Ga0307280_10206869	Not Available	695	Open in IMG/M
3300028778\|Ga0307288_10021768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2063	Open in IMG/M
3300028799\|Ga0307284_10434295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	536	Open in IMG/M
3300028803\|Ga0307281_10046793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1349	Open in IMG/M
3300028811\|Ga0307292_10290439	Not Available	684	Open in IMG/M
3300028819\|Ga0307296_10555658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300028824\|Ga0307310_10699455	Not Available	520	Open in IMG/M
3300028872\|Ga0307314_10013867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1773	Open in IMG/M
3300028872\|Ga0307314_10112051	Not Available	755	Open in IMG/M
3300030990\|Ga0308178_1167893	Not Available	515	Open in IMG/M
3300030993\|Ga0308190_1197786	Not Available	504	Open in IMG/M
3300031170\|Ga0307498_10002557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2909	Open in IMG/M
3300031170\|Ga0307498_10030467	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300031170\|Ga0307498_10114616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300031170\|Ga0307498_10160767	Not Available	753	Open in IMG/M
3300031421\|Ga0308194_10241287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	602	Open in IMG/M
3300031740\|Ga0307468_100897077	Not Available	768	Open in IMG/M
3300032174\|Ga0307470_11672025	Not Available	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.87%
Host-Associated	Host-Associated	29.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.31%
Plants	Host-Associated → Plants	29.13%
Aquatic	Environmental → Aquatic	14.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.39%
Sediment	Environmental → Aquatic → Sediment	12.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.80%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.94%
Roots	Host-Associated → Plants → Roots	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.54%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.71%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.10%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005148	Soil and rhizosphere microbial communities from Laval, Canada - mgLMA	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062590_1012735421	3300004157	Soil	MRLYALTELHDPEAIELFISEEDAKRALEDCLRDEPGWRGLLRVEEIELTASYQSAN*
Ga0062594_1000871691	3300005093	Soil	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEMTEVELDHEHTSLN*
Ga0062594_1005633212	3300005093	Soil	MRLYALTELHDPEAIELFNTEEDARRALEDCLRDEPQWRDRLEVTEVELDHEHTSLN*
Ga0066818_10039051	3300005104	Soil	NACFATDSRIRFHAMRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPDWRGVLRVEEVELDHEHTLLN*
Ga0066819_10153391	3300005148	Soil	IRFHAMRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPDWCGVLRVEEVEFDHEHTLLN*
Ga0066823_100762432	3300005163	Soil	MRLYALAELHDPEAIELFITEEDARRALEDCLRDESQWRGRLEVTEVELDHEHTSLN*
Ga0066809_101241692	3300005168	Soil	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPDWCGVLRVEEVEFDHEHTLLN*
Ga0070674_1011608931	3300005356	Miscanthus Rhizosphere	MRLYALTELHDPEVIELFITEEDARRALEDCLRDEPQWRGRLEVTEVGAL*
Ga0070711_1011263682	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LEFSTAAERRSLGTPIHDPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN*
Ga0070711_1019537222	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPDWRGLLRVEEIELDREHTSLN*
Ga0070678_1021922091	3300005456	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEMTEVELDHEH
Ga0070678_1024121002	3300005456	Miscanthus Rhizosphere	MRLYALTELTTRSEELFITEENARRALEDCLRDEPQWSGRLDVKEVEFDEREISPN*
Ga0068867_1002991832	3300005459	Miscanthus Rhizosphere	MRLYALTELHDPGDELFITEKDARRALEDCLRDEPSGAAELEVTEVELDHEHTSLN*
Ga0073909_100018664	3300005526	Surface Soil	MRLYALAELHDPEAIELFITEDARRALEDCLRDKPQWRGRLEVTEVKLDHKRTSLN*
Ga0070672_1011296302	3300005543	Miscanthus Rhizosphere	MRLYALTELTTRSEELFITEKDARRALEDCLRDEPSGAADFEVTEVELDHEH
Ga0070686_1000422912	3300005544	Switchgrass Rhizosphere	MRLYALTELHDPGEELFITEENARRALEDCLRDEPQWSGRLDVKEVEFDEREISPN*
Ga0070665_1002559874	3300005548	Switchgrass Rhizosphere	MRLYALTELHDPGDELFITEENARRALEDCLRDEPQWSGRLDVKEVEFDEREISPN*
Ga0070702_1017043792	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	ELHDPEAIELFITEEDAKRALEDCLRDEPRWSGRLEVTEVELDHEHTSLN*
Ga0068866_107765562	3300005718	Miscanthus Rhizosphere	MRLYALTELHDEAIELFITEEDARRALEDCLRDEPQWRDGLEVTEVADHEHTSLN*
Ga0068861_1021549022	3300005719	Switchgrass Rhizosphere	LEFSTGAERRSLGTSIHDPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN*
Ga0070716_1010686392	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRLYALTELHDPEAIELWITEEDARRALEDCLPDEPQWRGLLEVTEVETHL
Ga0097621_1019698591	3300006237	Miscanthus Rhizosphere	LEFSTGAERRSLGTSIHDPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELD
Ga0068871_1003029753	3300006358	Miscanthus Rhizosphere	MRLYALTELHDPEVIELFITDEDARRALEDCLRDEPQWRGRLEVTEVGAL*
Ga0074051_116204642	3300006572	Soil	MRLYALTELHDPEAIELFITEEDARRALEDCLRDESQWRGLLEVTELDQRNALRSTS*
Ga0074054_119320572	3300006579	Soil	MRLYALTELHDPEAIELVITEEDAKRALEDCLRDKLHWRERLEVTEVELDHEHTSLN*
Ga0074057_111780171	3300006605	Soil	MRLYALTELHDPEAIELWITEEDARRALEDCLPDEPQWRGLLEVTEVGLDHEHTSDPL*
Ga0068865_1003968992	3300006881	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPRWSGRLEVTEVELDHEHTSLN*
Ga0074063_138955152	3300006953	Soil	MRLYALTELHDPEAIELFVIEEDARRALEDCLRDEPQWHGRLEVTEVELDHEHTSLN*
Ga0105243_103902123	3300009148	Miscanthus Rhizosphere	TIPEAIELFISEEDAHRALEDCLRDEPQWRGRLEVTEVELNHEYTSLN*
Ga0105243_107053731	3300009148	Miscanthus Rhizosphere	PEAIELFITEEDAKRALEDCLRDEPRWSGRLEVTEVELDHEHTSLN*
Ga0105237_110790061	3300009545	Corn Rhizosphere	HDPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN*
Ga0127503_102155491	3300010154	Soil	QLHDPEAIELFITEEDARRALEDCLRDEPHWAGRLEVTEVELDHEHTSLN*
Ga0134125_114327011	3300010371	Terrestrial Soil	AEYGPGDAYALTELADPEAIELFITEEDARRALEDCLRDEPQWRGRLDVTEVELDHEHTSLNSPQ*
Ga0105239_111550822	3300010375	Corn Rhizosphere	RLYALTELHDPEAIELFNTEEDARRALEDCLRDEPQWRDRLEVTEVELDHEHTSLN*
Ga0134126_103935443	3300010396	Terrestrial Soil	LYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRDRLGVTDVERDHEHTSLN*
Ga0134122_106499042	3300010400	Terrestrial Soil	MRLYALTELHDPEAIELFITEEDARRALEDWLRDEPDWRGLLHVEEIELSAYKSSLN*
Ga0138505_1000039804	3300010999	Soil	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLGVTEVELDHEHTSLN*
Ga0105246_104248872	3300011119	Miscanthus Rhizosphere	DPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN*
Ga0137379_117590162	3300012209	Vadose Zone Soil	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPEWRGRLEVKEVELDHEHTSLN*
Ga0162651_1000915501	3300012938	Soil	MRLYALTELRDPEAIELFLTEEHARRALEDCLREEPGWRGFLRVEEIEFSSK
Ga0164298_103634483	3300012955	Soil	TELHDPEAIELFITEEDARRALEDCLRDEPQWRDRLGVTEVERDHEHTSLN*
Ga0164304_113637132	3300012986	Soil	MRLYALAELHDPEAIELFITEDARRALEDCLRDKPQWRGRLEVTEVKLDHKRTLLN*
Ga0157374_107343862	3300013296	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFTTEEDARRALEDCLRDEPQWSGRLEVTEVELDHEQTSLN*
Ga0157378_105570812	3300013297	Miscanthus Rhizosphere	VRSPSFTIPEAIELFISEEDAHRALEDCLRDEPQWRGRLEVTEVELNHEYTSLN*
Ga0157375_114002162	3300013308	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPQWSGRLEVTEVELDHEHTSLN*
Ga0157375_125551421	3300013308	Miscanthus Rhizosphere	TVRLYTLTELHDPEAIELFITEEDARRALEDCLRDEPQWTGRLGVTEVEFDHEHTALN*
Ga0184605_100876812	3300018027	Groundwater Sediment	MRLYALTELRDPEAIELFLTEEHARRALEDCLREEPGWRGFLRVEEIEFSSKTESAN
Ga0184605_103216492	3300018027	Groundwater Sediment	MRLYALTELHDPDAIELFFSKEDARRAFEDCLRDEPGWREPLRVEEIEFSSASECAN
Ga0184608_101428852	3300018028	Groundwater Sediment	MRLYALTELHDPEAIELFSTEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0184621_100215761	3300018054	Groundwater Sediment	MRLYALTELHDPEAIELFITEKDARRALEDCLRDEPKWRGLLEDCLRDEPEWQGLLEVKEVELDHEHTSLN
Ga0184619_100030652	3300018061	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0184618_103056022	3300018071	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARRALEDYLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0184635_103974921	3300018072	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPDWRGLLRVEEVELDHDRTSLN
Ga0184624_104872861	3300018073	Groundwater Sediment	FWTHARQRILTGLSAFEAGDPKAIDVYLREQDAQRALEDGLRDEPQWRGRLEVKEVELDHEHSSLN
Ga0184624_105038071	3300018073	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARRALEDRLRDEPQWRGRLEVKEVELDHKHTSLN
Ga0184609_101256772	3300018076	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEVTEVELDHERTSLN
Ga0184609_104433531	3300018076	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARRALEDYLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVE
Ga0184625_101935441	3300018081	Groundwater Sediment	LTGLSAFEAGDPKAIDVYLREQDAQRALEDGLRDEPQWRGRLEVKEVELDHEHSSLN
Ga0193700_10674351	3300019873	Soil	RLYALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0193727_10061475	3300019886	Soil	MPVNEFDGPVRVRGRRPQAIDVYLRAQDAQRALEDCLRDEPQWRGRLEVKEVELDHEHTSPN
Ga0193727_11344371	3300019886	Soil	QDPLETLHESPEVETLENACFATGSRIRSHAMRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPQWRGHLEVTKVELDHEHTSLN
Ga0193730_10299492	3300020002	Soil	MRLYALTELHDPDAIELFFSKEDARRAFEDCLRDEPGWRELLRVEEIEFSSASECAN
Ga0193755_12270531	3300020004	Soil	MRLYALTELHDPEAIELWITEEDARRALEDCLLDEPQWRGLLEVTEVELDHEHTSDPL
Ga0193697_11227122	3300020005	Soil	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPQWRDRLKVTEVELDHDHTWLN
Ga0193696_11725651	3300020016	Soil	MRLYALTELHDPEAIELIITEEDAKRALEDCLRDEPQWRDRLKVTEVELDHDHTSLN
Ga0210382_102568681	3300021080	Groundwater Sediment	MRLHALTELQDPGSDRALHHRGGRARALEDCLRDEPDWRGLLRVEEVELDHDHTSLNYLP
Ga0193699_100544593	3300021363	Soil	MRLYALTELHDPEAIELFITEEDARHALEDFLRDEPQWSGRLEVTEVELDHDHTSLN
Ga0222622_100858344	3300022756	Groundwater Sediment	MRLYALTELHDPEAIELFITEEDARPALEDRLRDEPQWRGRLEVKEVELDHKHTSLN
Ga0207693_1000412014	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAAREMSRIRSPGDAPVRAHKLHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEVTEVELGHEHTSLN
Ga0207686_103374831	3300025934	Miscanthus Rhizosphere	AMRLYALTELHDPEVIELFITEEDARRALEDCLRDEPQWRGRLEVTEVGAL
Ga0207669_107211651	3300025937	Miscanthus Rhizosphere	SIHDPEAKELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN
Ga0207669_112257521	3300025937	Miscanthus Rhizosphere	MRLYALTELHDPEVIELFITEEDARRALEDCLRDEPQWRGRLEMTEVELDHEHTSLN
Ga0207669_112780982	3300025937	Miscanthus Rhizosphere	DPEAIELFITEEDARRALKDCLRDEPQWRGRLEVTEVELGHEHTSLN
Ga0207691_104244363	3300025940	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPDWRGLLRVEEIELDREHTSLN
Ga0207691_111569642	3300025940	Miscanthus Rhizosphere	MRLYALTELHDPEAIELFNTEEDARRALEDCLRDEPQWRDRLEVTEVELDHEHTSLN
Ga0207691_112976222	3300025940	Miscanthus Rhizosphere	AHELHDPEAIELFITEEDARRALKDCLRDEPQWRGRLEVTEVELGHEHTSLN
Ga0207711_109685272	3300025941	Switchgrass Rhizosphere	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPQWRGRLEMTEVELDHEHTSLN
Ga0207668_106315141	3300025972	Switchgrass Rhizosphere	MRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN
Ga0207683_104676672	3300026121	Miscanthus Rhizosphere	AHRASRPGAIELFITEEDARRALEDCLRDEPQWRGRLEVTEVELDHEHTSLN
Ga0209811_100030238	3300027821	Surface Soil	MRLYALAELHDPEAIELFITEDARRALEDCLRDKPQWRGRLEVTEVKLDHKRTSLN
Ga0307321_10691392	3300028704	Soil	AMRLYALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0307295_100807592	3300028708	Soil	MRLYALTELHDPEAIELFITEEDAVRSRIVCGTSPQWRGRLEVKEVELDHEHTSLN
Ga0307293_101044942	3300028711	Soil	MNGCSAAGSRIRSYAMRLYALTELHDREAIELFVTEEDARRALEDCLRDEPQRRGRLEVKEIELDHERTSLN
Ga0307303_101069352	3300028713	Soil	RSRAMRLYALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0307298_100418992	3300028717	Soil	MRLYALTELRDPEAIELFLTEEHARRALEDCLREEPGWRGLLRVEEIEFSSKTESAN
Ga0307280_102068691	3300028768	Soil	MPEAIELFITEEDARRALEDCLRDEPQWRGRLEVKEVELDHEHTSLN
Ga0307288_100217685	3300028778	Soil	MRLYALTELHDPEAIELFITEEDARRALEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0307284_104342951	3300028799	Soil	MRLYALVEAGDREAIDVYLREQDAERAPEDCLRGEPQWRGRLEVTEVDLDHEHTSLN
Ga0307281_100467932	3300028803	Soil	MRLYALTELHDPEAIELFITQEDAQRALEDCLRDEPQWHGLPSVEQIELREENPPSLN
Ga0307292_102904391	3300028811	Soil	MRLYALTELHGPEAIELFITEEDARRALEDCLRDEPSWRGRLVVTEVEL
Ga0307296_105556581	3300028819	Soil	MRLYALTELHDPEAIELFVTEGDARRALEDCLRDEPQWRGRLEVKELELDHEHTSLN
Ga0307310_106994551	3300028824	Soil	LRLYALTELHDPEAIELFITEEDAKRALEDCLRDEPQWSGRLEVTEVELDHEHTSLN
Ga0307314_100138675	3300028872	Soil	LYALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWQGLLEVKEVELDHEHTSLN
Ga0307314_101120511	3300028872	Soil	LPPLTEVAIELFITEEDARPALEDCLRDEPRWRGLLEVSEVELDHEHTSLN
Ga0308178_11678932	3300030990	Soil	LTELHDPEAIELFITEEDARRALEDYLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0308190_11977862	3300030993	Soil	PNTVRAVRLYGLTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0307498_100025573	3300031170	Soil	MCLYALTELRDPEAIELFITEEDARRALEDCLRDEPDWRGRLEVTEVELDHEHTSLN
Ga0307498_100304671	3300031170	Soil	MRLYALTELHDPGAIELFITEEDARRALEDCLRDEPQWTGRLEVTEDELDHEHTSLN
Ga0307498_101146162	3300031170	Soil	MRLYALTELHDPEAIELFITEEDVRRALEDCLRDEPECSGRLEVNEFERDHEHTSLN
Ga0307498_101607671	3300031170	Soil	HAMRLYALTELHDPEAIELFITEEDAKRALEDSLRDEPDWRGRLEVTEVELDHEHTSLN
Ga0308194_102412872	3300031421	Soil	ALTELHDPEAIELFITEEDARRALEDCLRDEPKWRGLLEDCLRDEPEWHGLLEVKEVELDHEHTSLN
Ga0307468_1008970772	3300031740	Hardwood Forest Soil	MRLYKLTELQDPEAIELFITEEDAKRALEAYLRDEPNWQGRLRVDEVELDNKHTSLN
Ga0307470_116720251	3300032174	Hardwood Forest Soil	LFRDPKAIELFITEEDARRALEDCLRDEPQWRGLLEVTEVELDHEHTSLN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099730

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences