Metagenome / Metatranscriptome Family F099772

Basic Information
Family ID	F099772
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	99 residues
Representative Sequence	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Number of Associated Samples	88
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	65.69 %
% of genes near scaffold ends (potentially truncated)	46.60 %
% of genes from short scaffolds (< 2000 bps)	71.84 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (51.456 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (29.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (45.631 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.57% β-sheet: 0.00% Coil/Unstructured: 51.43%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF02321	OEP	22.33
PF11154	DUF2934	14.56
PF00664	ABC_membrane	3.88
PF00873	ACR_tran	3.88
PF16576	HlyD_D23	3.88
PF00149	Metallophos	1.94
PF12732	YtxH	1.94
PF13459	Fer4_15	0.97
PF00196	GerE	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	44.66

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
All Organisms	root	All Organisms	48.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
cellular organisms	root	All Organisms → cellular organisms	48.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	39.81 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	34.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	34.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	34.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	34.95 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	14.56 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	11.65 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	14.56 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	11.65 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	1.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_7181000	Not Available	999	Open in IMG/M
3300000156\|NODE_c0488751	Not Available	988	Open in IMG/M
3300000890\|JGI11643J12802_10039771	Not Available	648	Open in IMG/M
3300000956\|JGI10216J12902_100828639	All Organisms → cellular organisms → Bacteria	14656	Open in IMG/M
3300002077\|JGI24744J21845_10034601	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	958	Open in IMG/M
3300003267\|soilL1_10222911	Not Available	1191	Open in IMG/M
3300003371\|JGI26145J50221_1001258	All Organisms → cellular organisms → Bacteria → Nitrospirae	2009	Open in IMG/M
3300003379\|JGI26142J50222_102863	Not Available	513	Open in IMG/M
3300003383\|JGI26140J50224_104089	Not Available	548	Open in IMG/M
3300003503\|JGI26141J51220_1015299	Not Available	522	Open in IMG/M
3300003504\|JGI26138J51218_106108	Not Available	555	Open in IMG/M
3300004114\|Ga0062593_100147508	All Organisms → cellular organisms → Bacteria	1777	Open in IMG/M
3300004114\|Ga0062593_100204076	All Organisms → cellular organisms → Bacteria → Nitrospirae	1578	Open in IMG/M
3300004156\|Ga0062589_100020220	All Organisms → cellular organisms → Bacteria	3122	Open in IMG/M
3300004157\|Ga0062590_100036598	All Organisms → cellular organisms → Bacteria	2564	Open in IMG/M
3300004157\|Ga0062590_100347385	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1185	Open in IMG/M
3300004157\|Ga0062590_100491010	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1043	Open in IMG/M
3300004463\|Ga0063356_101759976	Not Available	929	Open in IMG/M
3300005289\|Ga0065704_10374076	Not Available	781	Open in IMG/M
3300005290\|Ga0065712_10543032	Not Available	621	Open in IMG/M
3300005332\|Ga0066388_106586863	Not Available	585	Open in IMG/M
3300005344\|Ga0070661_100236761	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300005347\|Ga0070668_100149887	All Organisms → cellular organisms → Bacteria → Nitrospirae	1885	Open in IMG/M
3300005457\|Ga0070662_101263062	Not Available	635	Open in IMG/M
3300005458\|Ga0070681_11550482	Not Available	587	Open in IMG/M
3300005616\|Ga0068852_100723961	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1006	Open in IMG/M
3300005937\|Ga0081455_10002989	All Organisms → cellular organisms → Bacteria	19729	Open in IMG/M
3300006173\|Ga0070716_100006502	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	5712	Open in IMG/M
3300006237\|Ga0097621_100040174	All Organisms → cellular organisms → Bacteria → Proteobacteria	3760	Open in IMG/M
3300006755\|Ga0079222_11008581	Not Available	717	Open in IMG/M
3300006852\|Ga0075433_10279350	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1479	Open in IMG/M
3300006852\|Ga0075433_11276765	Not Available	636	Open in IMG/M
3300006914\|Ga0075436_100043899	All Organisms → cellular organisms → Bacteria	3082	Open in IMG/M
3300006969\|Ga0075419_10005448	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	8043	Open in IMG/M
3300009094\|Ga0111539_12344135	Not Available	619	Open in IMG/M
3300009098\|Ga0105245_12381130	Not Available	583	Open in IMG/M
3300009156\|Ga0111538_10175424	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2721	Open in IMG/M
3300009156\|Ga0111538_11569089	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	830	Open in IMG/M
3300009545\|Ga0105237_11230689	Not Available	755	Open in IMG/M
3300010371\|Ga0134125_12217301	Not Available	597	Open in IMG/M
3300010373\|Ga0134128_10113478	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	3076	Open in IMG/M
3300010397\|Ga0134124_11107953	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	808	Open in IMG/M
3300010399\|Ga0134127_11195661	Not Available	827	Open in IMG/M
3300010401\|Ga0134121_12344793	Not Available	573	Open in IMG/M
3300012898\|Ga0157293_10145269	Not Available	664	Open in IMG/M
3300012899\|Ga0157299_10138372	Not Available	675	Open in IMG/M
3300012906\|Ga0157295_10001195	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	3536	Open in IMG/M
3300012908\|Ga0157286_10054042	Not Available	1041	Open in IMG/M
3300012912\|Ga0157306_10000345	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	9142	Open in IMG/M
3300012915\|Ga0157302_10008807	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2362	Open in IMG/M
3300012951\|Ga0164300_10093527	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1304	Open in IMG/M
3300012955\|Ga0164298_10019496	All Organisms → cellular organisms → Bacteria → Nitrospirae	2860	Open in IMG/M
3300012957\|Ga0164303_10089531	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1493	Open in IMG/M
3300012957\|Ga0164303_10312502	Not Available	932	Open in IMG/M
3300012958\|Ga0164299_10059013	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1832	Open in IMG/M
3300012958\|Ga0164299_10233749	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1087	Open in IMG/M
3300012960\|Ga0164301_10087913	Not Available	1743	Open in IMG/M
3300012961\|Ga0164302_10063174	All Organisms → cellular organisms → Bacteria	1898	Open in IMG/M
3300012961\|Ga0164302_10112593	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	1530	Open in IMG/M
3300012971\|Ga0126369_12072678	Not Available	657	Open in IMG/M
3300012988\|Ga0164306_10032455	All Organisms → cellular organisms → Bacteria → Nitrospirae	3014	Open in IMG/M
3300012989\|Ga0164305_10118714	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1737	Open in IMG/M
3300014325\|Ga0163163_12133239	Not Available	620	Open in IMG/M
3300015371\|Ga0132258_10498140	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	3046	Open in IMG/M
3300015372\|Ga0132256_100073970	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3238	Open in IMG/M
3300015372\|Ga0132256_100946581	Not Available	977	Open in IMG/M
3300015373\|Ga0132257_100268608	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2041	Open in IMG/M
3300015373\|Ga0132257_100297958	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1937	Open in IMG/M
3300015374\|Ga0132255_100274166	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2418	Open in IMG/M
3300015374\|Ga0132255_100277012	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2406	Open in IMG/M
3300015374\|Ga0132255_104029550	Not Available	623	Open in IMG/M
3300023057\|Ga0247797_1051212	Not Available	593	Open in IMG/M
3300023062\|Ga0247791_1026702	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	876	Open in IMG/M
3300023071\|Ga0247752_1041533	Not Available	704	Open in IMG/M
3300023266\|Ga0247789_1131622	Not Available	515	Open in IMG/M
3300025903\|Ga0207680_10155803	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1527	Open in IMG/M
3300025920\|Ga0207649_10049218	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	2602	Open in IMG/M
3300025920\|Ga0207649_10241128	Not Available	1298	Open in IMG/M
3300025933\|Ga0207706_10954107	Not Available	722	Open in IMG/M
3300025945\|Ga0207679_10031294	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3723	Open in IMG/M
3300025972\|Ga0207668_10012749	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	5154	Open in IMG/M
3300026023\|Ga0207677_10013072	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	4797	Open in IMG/M
3300026041\|Ga0207639_11729238	Not Available	586	Open in IMG/M
3300026116\|Ga0207674_10025830	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	6253	Open in IMG/M
3300026142\|Ga0207698_10464207	Not Available	1225	Open in IMG/M
3300026815\|Ga0207442_105903	Not Available	572	Open in IMG/M
3300027438\|Ga0207564_104118	Not Available	663	Open in IMG/M
3300027682\|Ga0209971_1136635	Not Available	604	Open in IMG/M
3300027787\|Ga0209074_10545008	Not Available	510	Open in IMG/M
3300031538\|Ga0310888_10007911	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3912	Open in IMG/M
3300031716\|Ga0310813_10470299	Not Available	1094	Open in IMG/M
3300031716\|Ga0310813_11263323	Not Available	682	Open in IMG/M
3300031740\|Ga0307468_101584321	Not Available	611	Open in IMG/M
3300031847\|Ga0310907_10478885	Not Available	662	Open in IMG/M
3300031908\|Ga0310900_10020420	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3487	Open in IMG/M
3300031943\|Ga0310885_10644320	Not Available	591	Open in IMG/M
3300032013\|Ga0310906_10806640	Not Available	663	Open in IMG/M
3300032122\|Ga0310895_10056632	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	1461	Open in IMG/M
3300032174\|Ga0307470_10678415	Not Available	782	Open in IMG/M
3300032179\|Ga0310889_10272729	Not Available	808	Open in IMG/M
3300032421\|Ga0310812_10570657	Not Available	507	Open in IMG/M
3300034663\|Ga0314784_087094	Not Available	632	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.31%
Host-Associated	Host-Associated	42.72%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.31%
Plants	Host-Associated → Plants	42.72%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.31%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.42%
Roots	Host-Associated → Plants → Roots	1.94%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.77%
Loam	Environmental → Terrestrial → Soil → Loam	2.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.18%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.77%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.77%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	6.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003371	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM	Host-Associated	Open in IMG/M
3300003379	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S PM	Host-Associated	Open in IMG/M
3300003383	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM	Host-Associated	Open in IMG/M
3300003503	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM	Host-Associated	Open in IMG/M
3300003504	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023062	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S081-202R-4	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026815	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-12 (SPAdes)	Environmental	Open in IMG/M
3300027438	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0043.00005750	2162886013	Switchgrass Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
NODE_04887512	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MFHKLGQRAVFLMLAIFAVQFLATACTDDWLRQWSPGPLEAHDQLPGAPDGQAESDQGEGELEELALAQGEAFRIIHFTRTCTVDNASCPRTNFASDWF
JGI11643J12802_100397712	3300000890	Soil	CAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
JGI10216J12902_1008286395	3300000956	Soil	MVRFSGHRLFLLLLAVCAVQFLGTAYPNDCLRQWSPGPLQAHDQLPGAPDGQTESDQGESEIEELALAQGEAFRIIHLTRTCILHSASCPRTDFVSDWFRPPVLS*
JGI24744J21845_100346011	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNAS
soilL1_102229112	3300003267	Sugarcane Root And Bulk Soil	MVRTVGHSVFLFLFALCVAQFIGTACSDDCLPQGSTAPVHAYDQLPGAPDGETESDQGEGELEALALAQGEALRVIHLTRTCALDHASCPRTIVASDWFRPPAHF*
JGI26145J50221_10012582	3300003371	Arabidopsis Thaliana Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
JGI26142J50222_1028631	3300003379	Arabidopsis Thaliana Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRT
JGI26140J50224_1040891	3300003383	Arabidopsis Thaliana Rhizosphere	ALCQPLLLCACPRRGTNCGWGISHGTVSRLSSRQGGMFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
JGI26141J51220_10152991	3300003503	Arabidopsis Thaliana Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPP
JGI26138J51218_1061082	3300003504	Arabidopsis Thaliana Rhizosphere	QSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0062593_1001475082	3300004114	Soil	MLRTFGQRVLLLFFLVCAVQLFGTAWSDECPRQWSASPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPALS*
Ga0062593_1002040761	3300004114	Soil	LMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0062589_1000202201	3300004156	Soil	MLRTFGQRVLLLFFLVCAVQLFGTAWSDECPRQWSASPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPAL
Ga0062590_1000365983	3300004157	Soil	MVRTIGYLFILLLMVFAVQLVSTASADDCLRQWSPSPFQAHDQLPGSPDGEAESDQENGELEEFALAQGEAFRILPSTRACILDSTSCPRTDFVSDWFRPPVLS*
Ga0062590_1003473852	3300004157	Soil	DCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0062590_1004910101	3300004157	Soil	TAWSDECPRQWSASPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWLRPPALS*
Ga0063356_1017599761	3300004463	Arabidopsis Thaliana Rhizosphere	MVRTFGYGVFLLFVALCAVQLMGTPSADDFPDQWSTGPLHAHDQLPGAADAQPETDQEEPEELAFSQGDAIRIIHLARACILDRASCPRTDFASELFRPPALS*
Ga0065704_103740762	3300005289	Switchgrass Rhizosphere	MVRFSGHRLFLLLLAVCAVQFLGTAYPNDCLRQWSPGPLQAHDQLPGAPDGQTESDQGESEIEELALAQGEAFRIIHLTRTCILHSAPCPRTDFVSDWFRPPVLS*
Ga0065712_105430321	3300005290	Miscanthus Rhizosphere	VCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0066388_1065868632	3300005332	Tropical Forest Soil	FIGTACADDCLPQWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVQLTGSCFVDHIACPRTNFASDLFRPPASF*
Ga0070661_1002367612	3300005344	Corn Rhizosphere	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLDSASCPRTDFVSDWFRPPALS*
Ga0070668_1001498873	3300005347	Switchgrass Rhizosphere	GQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0070662_1012630622	3300005457	Corn Rhizosphere	WSDECPRQWSASPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPALS*
Ga0070681_115504822	3300005458	Corn Rhizosphere	TVARFPRGSSVMFRMLGQRVVCLLFATFAVQFVATACTDDWLRQWSAVPLEAQEQLPGTTNGQTESDQGEGALEELALAQGEAFRIIHLARTCTVDNSSCPRTNFVSDWFRPPTLS*
Ga0068852_1007239611	3300005616	Corn Rhizosphere	DDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0081455_1000298912	3300005937	Tabebuia Heterophylla Rhizosphere	MARTFGCRLALLFLALCAVQFFGTPWSDDFPHPGSTGPVHAHDQLPGAPDGQPEADQGGEFEELALAQGEAFRIVHLTRTCILDSASCPRTDFVSDWFRPPALS*
Ga0070716_1000065022	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MFRTFGQSFFLLLLAVCAVQLMGTVCADDCLRQWSSSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0097621_1000401747	3300006237	Miscanthus Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWF
Ga0079222_110085812	3300006755	Agricultural Soil	MLRTFGHSFFLLLLAVCAVQLMGTVCADDCLRQWSTSPVHAHDQMPPSPDGQTETDPGEGELEELALAQGEAFRIIHLTRACVLDNASCPRTDFVSDWFRPPALP*
Ga0075433_102793502	3300006852	Populus Rhizosphere	FFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0075433_112767652	3300006852	Populus Rhizosphere	FFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP*
Ga0075436_1000438991	3300006914	Populus Rhizosphere	MLRTFGHSFFLLLLAVCAVQLMGTVCADDCLRQWSTSPVHAHDQMPPSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPR
Ga0075419_100054481	3300006969	Populus Rhizosphere	LRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0111539_123441352	3300009094	Populus Rhizosphere	FLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP*
Ga0105245_123811301	3300009098	Miscanthus Rhizosphere	EWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVLDDTACPRTDFALDWFRPPVHP*
Ga0111538_101754243	3300009156	Populus Rhizosphere	SFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0111538_115690892	3300009156	Populus Rhizosphere	SFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP*
Ga0105237_112306891	3300009545	Corn Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMCTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0134125_122173011	3300010371	Terrestrial Soil	MVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVLDDTACPRTDFALDWFRPPVHP*
Ga0134128_101134781	3300010373	Terrestrial Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP*
Ga0134124_111079532	3300010397	Terrestrial Soil	QGVMFRSLGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSLDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0134127_111956612	3300010399	Terrestrial Soil	MVRTVGHSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVLDDTACPRTDFALDWFRPPVHP*
Ga0134121_123447932	3300010401	Terrestrial Soil	VGHSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVLDDTACPRTDFALDWFRPPVHP*
Ga0157293_101452691	3300012898	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHLHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP*
Ga0157299_101383721	3300012899	Soil	MFRTFGQSFFLLLLMVCTVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDHTS
Ga0157295_100011951	3300012906	Soil	CADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0157286_100540422	3300012908	Soil	MFRTFGQSFFLLLLMVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0157306_100003456	3300012912	Soil	LLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0157302_100088072	3300012915	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164300_100935272	3300012951	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRVIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164298_100194962	3300012955	Soil	MFRTFGHSFFLLLLTVFAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRVIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164303_100895312	3300012957	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNTSCPRTDFAFDWFRPPALP*
Ga0164303_103125021	3300012957	Soil	MFRTFGHSFFLPFLAVCAVQLMGTACADDCLRQWSSSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNTSCPRT
Ga0164299_100590132	3300012958	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP*
Ga0164299_102337491	3300012958	Soil	QWSTSPVHAHDQLPGSPDGQTETDPGEGELEELAIAQGEAVRVIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164299_105790062	3300012958	Soil	MFRTFGHSFFLPFLAVCAVQLMGTACADDCLRQWSSSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVL
Ga0164301_100879133	3300012960	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRVIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164302_100631744	3300012961	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDAGEGELEELALAQGEAFRIIHLARACVLDNTSCPRTDFAFDWFRPPALP*
Ga0164302_101125933	3300012961	Soil	MFRTFGHSFFLLLLTVFAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRVIHLARACVLDNASCPRTDFASDWFRPP
Ga0126369_120726781	3300012971	Tropical Forest Soil	MVCAMQLMGTACSDDCLRPWSASPVHAQDQLPGSPDGQTEGDQAEGELEELALAQGEAFRIIHLSWICVLDHAFCPGTDFASDWFRPPVHP*
Ga0164306_100324553	3300012988	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFASDWFRPPALP*
Ga0164305_101187142	3300012989	Soil	MFRTFGQSFFLLLLAVCAVQLMGTVCADDCLRQWSSSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFASDCSRPPALP*
Ga0163163_121332391	3300014325	Switchgrass Rhizosphere	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECARQWSGNPLHAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLDSASCPRTDFVSDWFRPPALS*
Ga0132258_104981403	3300015371	Arabidopsis Rhizosphere	MFRTFGQSFFLLLLAVCAVQLMGTVCADDCLRQWSSSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLTRACVLDNASCPRTDFASDWFRPPALP*
Ga0132256_1000739702	3300015372	Arabidopsis Rhizosphere	MVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEATRIVHLMRSCLVDDVACPRTNFASDLFRPPTFF*
Ga0132256_1009465812	3300015372	Arabidopsis Rhizosphere	MFRTFWHSFFLLLLTVCAVQLMGMACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHFARACVLDNASCPRTDFAFDWFRPPALP*
Ga0132257_1002686082	3300015373	Arabidopsis Rhizosphere	MFRTFWHSFFLLLLTVCAVQLMGMACTDDCLRQWPISPVHAHDQLPGSADGQTETDPGEGELEELALAQGEAFRIIHFARACVLDNASCPRTDFAFDWFRPPALP*
Ga0132257_1002979582	3300015373	Arabidopsis Rhizosphere	MVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVVDDTACPRTNFASDLFRPPTFF*
Ga0132255_1002741664	3300015374	Arabidopsis Rhizosphere	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHFARACVLDNASCPRTDFAFDWFRPPALP*
Ga0132255_1002770121	3300015374	Arabidopsis Rhizosphere	CSDDCLPEWSTNPVHAHDQLPGSPDGKTESDQGEGELEELALAQGEAIRIVHLMRSCVVDDTACPRTNFASDLFRPPTFF*
Ga0132255_1040295501	3300015374	Arabidopsis Rhizosphere	VMVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEATRIVHLMRSCLVDDVACPRTNFASDLFRPPTFF*
Ga0247797_10512121	3300023057	Soil	GQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0247791_10267022	3300023062	Soil	CAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0247752_10415331	3300023071	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPR
Ga0247789_11316221	3300023266	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNA
Ga0207680_101558032	3300025903	Switchgrass Rhizosphere	MLRTFGQRVLLLFFLVCAVQLFGTAWSDECPRQWSASPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPALS
Ga0207649_100492183	3300025920	Corn Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRIDFAFDWFRPPALP
Ga0207649_102411282	3300025920	Corn Rhizosphere	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPALS
Ga0207706_109541071	3300025933	Corn Rhizosphere	GVLFLFFVVFAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELVFAQGEAFRIIHLARLCPLASASCPRTDFVSDWFRPPALS
Ga0207679_100312946	3300025945	Corn Rhizosphere	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLD
Ga0207668_100127492	3300025972	Switchgrass Rhizosphere	MGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207677_100130724	3300026023	Miscanthus Rhizosphere	FRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207639_117292381	3300026041	Corn Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTEFAFDWFRP
Ga0207674_100258301	3300026116	Corn Rhizosphere	LMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207698_104642072	3300026142	Corn Rhizosphere	MFRTFGQSFFLLLLTVCAVQLMGTACGDDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207442_1059032	3300026815	Soil	SPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0207564_1041181	3300027438	Soil	LLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0209971_11366351	3300027682	Arabidopsis Thaliana Rhizosphere	MVRTFGYGVFLLFVALCAVQLMGTPSADDFPDQWSTGPLHAHDQLPGAADAQPETDQEEPEELAFSQGDAIRIIHLARACILDRASCPRTDFASELFRPP
Ga0209074_105450081	3300027787	Agricultural Soil	REWNCGWGVSHGTVSPLSQGQGVMLRTFGHSFFLLLLAVCAVQLMGTVCADDCLRQWSTSPVHAHDQMPPSPDGQTETDPGEGELEELALAQGEAFRIIHLTRACVLDNASCPRTDFVSDWFRPPALP
Ga0310888_100079112	3300031538	Soil	MLRTFGQGVLLLFFVVCAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLDSASCPRTDFVSDWFRPPALS
Ga0310813_104702992	3300031716	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDNTSCPRTDFAFDWFRPPALP
Ga0310813_112633232	3300031716	Soil	MVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEATRIVHLMRSCLVDDVACPRTNFASDLFRPPTFF
Ga0307468_1015843211	3300031740	Hardwood Forest Soil	MFRTCGHSFFLLLLTVFAVQLMGTACGDDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELGELALAQGEAFRIIHLAQARVLDNTSCPRTDFASDWFRPPALP
Ga0310907_104788851	3300031847	Soil	MVRTVGLSLVLLLLALCVVQFIGTACSDDCLPEWSTNPVHAHDQLPGSPDGQTESDQGEGELEELALAQGEAIRIVHLMRSCVVDDTACPRTNFASDLFRPPTFF
Ga0310900_100204202	3300031908	Soil	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECPRQWSGNPLQAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLDSASCPRTDFVSDWFRPPALS
Ga0310885_106443202	3300031943	Soil	MLRTFGQGVLFLFFVVCAVQLFGTAWSDECARQWSGNPLHAHEQMPGAADGQTDQGGELEELALAQGEAFRIIHLARRSSLDSASCPRTDFVSDWFRPPVLS
Ga0310906_108066401	3300032013	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEAFRIIHLARACVLDNASCPRTDFA
Ga0310895_100566322	3300032122	Soil	MFRTFGQSFFLLLLTVCAVQLMGTACADDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGEFEELALAQGEVFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0307470_106784152	3300032174	Hardwood Forest Soil	MFRTFGHSFFLLLLTVFAVQLMGTACGDDCLRQWSTSPVHAHDQLPGSPDGQTETDPGEGELGELALAQGEAFRIIHLARARVLDNTSCPRTDFASDWFRPPALP
Ga0310889_102727292	3300032179	Soil	MFRTFWHSFFLLLLTVCAVQLMGTACTDDCLRQWPISPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP
Ga0310812_105706571	3300032421	Soil	MFRTFGQSFFLLLLMVCAVQLMGTACADDCLRQWSSPIHAHDQLPGSPDGQTETDPGEGELEELALAQGEGFRIIHLARTCILDTTSCPQTDFASDWFRPPALR
Ga0314784_087094_34_396	3300034663	Soil	MTHPGYSSMQPKARSMKLPTMLLFFLLLLTVCAVQLMGTACADDCLRHWSTSPVHAHDQLPGSPDGQTETDPGEGELEELALAQGEAFRIIHLARACVLDNASCPRTDFAFDWFRPPALP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099772

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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