Metagenome / Metatranscriptome Family F099802

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099802
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	57 residues
Representative Sequence	MKDGRWEVLIFPYNADEARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPPGT
Number of Associated Samples	80
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.21 %
% of genes near scaffold ends (potentially truncated)	74.76 %
% of genes from short scaffolds (< 2000 bps)	88.35 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.553 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.922 % of family members)
Environment Ontology (ENVO)	Unclassified (50.485 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.398 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.24% β-sheet: 21.18% Coil/Unstructured: 70.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00496	SBP_bac_5	33.98
PF12746	GNAT_acetyltran	12.62
PF09865	DUF2092	3.88
PF08241	Methyltransf_11	2.91
PF13649	Methyltransf_25	1.94
PF12276	DUF3617	0.97
PF13676	TIR_2	0.97
PF01609	DDE_Tnp_1	0.97
PF03237	Terminase_6N	0.97
PF13610	DDE_Tnp_IS240	0.97
PF12833	HTH_18	0.97
PF01738	DLH	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.97
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.97
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.97
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.97
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.97
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.55 %
Unclassified	root	N/A	18.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.40 %
Unclassified	root	N/A	18.45 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8.74 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.97 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.81 %
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.97 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.88 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.94 %
Candidatus Handelsmanbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria	0.97 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.91 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	2.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.94 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.97 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.97 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Sinorhizobium/Ensifer group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group	1.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.94 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Scytonemataceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae	0.97 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Sinorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium	1.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.94 %
Scytonema	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema	0.97 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Sinorhizobium fredii group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group	1.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.94 %
Scytonema millei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema millei	0.97 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.45 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7.77 %
Sinorhizobium fredii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	1.94 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.94 %
Scytonema millei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema millei	0.97 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.97 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.97 %
Candidatus Handelsmanbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10060963	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300004633\|Ga0066395_10035586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2110	Open in IMG/M
3300005178\|Ga0066688_10902175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	545	Open in IMG/M
3300005186\|Ga0066676_10494569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	830	Open in IMG/M
3300005764\|Ga0066903_100397290	Not Available	2265	Open in IMG/M
3300005764\|Ga0066903_100772715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1711	Open in IMG/M
3300005764\|Ga0066903_106048266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	634	Open in IMG/M
3300006172\|Ga0075018_10405529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300006904\|Ga0075424_100921669	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300009012\|Ga0066710_104474198	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300009088\|Ga0099830_10598480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300010043\|Ga0126380_10671906	Not Available	828	Open in IMG/M
3300010048\|Ga0126373_12221948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	610	Open in IMG/M
3300010048\|Ga0126373_12860434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	539	Open in IMG/M
3300010376\|Ga0126381_100785036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1367	Open in IMG/M
3300010376\|Ga0126381_101430774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema millei	999	Open in IMG/M
3300010376\|Ga0126381_102329107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300010376\|Ga0126381_104768346	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010376\|Ga0126381_105110399	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Handelsmanbacteria → Candidatus Handelsmanbacteria bacterium	502	Open in IMG/M
3300010398\|Ga0126383_10111583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2469	Open in IMG/M
3300010398\|Ga0126383_11131913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	872	Open in IMG/M
3300012202\|Ga0137363_11733661	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300012207\|Ga0137381_10337663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1313	Open in IMG/M
3300012209\|Ga0137379_11834453	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300012351\|Ga0137386_10369771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300012354\|Ga0137366_10214941	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300012357\|Ga0137384_10701323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	822	Open in IMG/M
3300014150\|Ga0134081_10190781	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300016270\|Ga0182036_10661134	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300016294\|Ga0182041_10480993	All Organisms → cellular organisms → Bacteria	1073	Open in IMG/M
3300016319\|Ga0182033_10550929	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300016319\|Ga0182033_11682417	All Organisms → cellular organisms → Bacteria → Proteobacteria	575	Open in IMG/M
3300016341\|Ga0182035_10786738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	834	Open in IMG/M
3300016341\|Ga0182035_11023920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	733	Open in IMG/M
3300016404\|Ga0182037_10366472	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300016404\|Ga0182037_10499919	Not Available	1019	Open in IMG/M
3300016422\|Ga0182039_10330156	All Organisms → cellular organisms → Bacteria → Proteobacteria	1274	Open in IMG/M
3300016445\|Ga0182038_12064856	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300018482\|Ga0066669_10822375	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300020579\|Ga0210407_10003299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13159	Open in IMG/M
3300020580\|Ga0210403_10122270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2119	Open in IMG/M
3300021088\|Ga0210404_10250247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300021406\|Ga0210386_10899735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	758	Open in IMG/M
3300021432\|Ga0210384_11741038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300021479\|Ga0210410_10714573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300021560\|Ga0126371_10620324	Not Available	1230	Open in IMG/M
3300021560\|Ga0126371_11739793	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300022726\|Ga0242654_10011943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1937	Open in IMG/M
3300026551\|Ga0209648_10041828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3959	Open in IMG/M
3300026557\|Ga0179587_10330463	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300027521\|Ga0209524_1083353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300027654\|Ga0209799_1108913	Not Available	629	Open in IMG/M
3300027748\|Ga0209689_1128609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300027903\|Ga0209488_10090628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2284	Open in IMG/M
3300027910\|Ga0209583_10055732	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300028536\|Ga0137415_10425290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300028536\|Ga0137415_10474228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1058	Open in IMG/M
3300031474\|Ga0170818_107411733	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300031573\|Ga0310915_10431698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	936	Open in IMG/M
3300031573\|Ga0310915_10842146	Not Available	644	Open in IMG/M
3300031668\|Ga0318542_10261305	Not Available	882	Open in IMG/M
3300031680\|Ga0318574_10604944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300031680\|Ga0318574_10749118	Not Available	572	Open in IMG/M
3300031680\|Ga0318574_10915792	Not Available	513	Open in IMG/M
3300031681\|Ga0318572_10487608	Not Available	734	Open in IMG/M
3300031719\|Ga0306917_11217147	Not Available	584	Open in IMG/M
3300031724\|Ga0318500_10631899	Not Available	544	Open in IMG/M
3300031747\|Ga0318502_10841616	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300031764\|Ga0318535_10325567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300031771\|Ga0318546_10050180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2595	Open in IMG/M
3300031771\|Ga0318546_10479594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	872	Open in IMG/M
3300031771\|Ga0318546_10848666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	643	Open in IMG/M
3300031777\|Ga0318543_10015031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2794	Open in IMG/M
3300031781\|Ga0318547_10798649	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300031795\|Ga0318557_10037977	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300031796\|Ga0318576_10616148	Not Available	511	Open in IMG/M
3300031797\|Ga0318550_10165005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1067	Open in IMG/M
3300031820\|Ga0307473_10164524	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300031845\|Ga0318511_10125494	All Organisms → cellular organisms → Bacteria → Proteobacteria	1109	Open in IMG/M
3300031879\|Ga0306919_10462363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	977	Open in IMG/M
3300031880\|Ga0318544_10141837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	919	Open in IMG/M
3300031890\|Ga0306925_11794622	Not Available	588	Open in IMG/M
3300031910\|Ga0306923_10366124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1643	Open in IMG/M
3300031912\|Ga0306921_10538898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
3300031912\|Ga0306921_11995123	Not Available	618	Open in IMG/M
3300031941\|Ga0310912_11418051	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300031954\|Ga0306926_11654929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	732	Open in IMG/M
3300031954\|Ga0306926_12614640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300032001\|Ga0306922_10038004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4935	Open in IMG/M
3300032035\|Ga0310911_10455140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Sinorhizobium/Ensifer group → Sinorhizobium → Sinorhizobium fredii group → Sinorhizobium fredii	741	Open in IMG/M
3300032035\|Ga0310911_10658313	Not Available	607	Open in IMG/M
3300032041\|Ga0318549_10496750	Not Available	549	Open in IMG/M
3300032051\|Ga0318532_10123239	Not Available	918	Open in IMG/M
3300032059\|Ga0318533_10072836	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300032060\|Ga0318505_10023517	All Organisms → cellular organisms → Bacteria	2434	Open in IMG/M
3300032063\|Ga0318504_10573316	Not Available	542	Open in IMG/M
3300032065\|Ga0318513_10293874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300032065\|Ga0318513_10315818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	759	Open in IMG/M
3300032076\|Ga0306924_10766656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1078	Open in IMG/M
3300032076\|Ga0306924_11079867	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300032180\|Ga0307471_101143387	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300032205\|Ga0307472_101640765	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300032261\|Ga0306920_104280407	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.03%
Host-Associated	Host-Associated	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.09%
Aquatic	Environmental → Aquatic	1.94%
Plants	Host-Associated → Plants	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.09%
Sediment	Environmental → Aquatic → Sediment	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.29%
Loam	Environmental → Terrestrial → Soil → Loam	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.17%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100609632	3300001545	Forest Soil	YEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0066395_100355862	3300004633	Tropical Forest Soil	MKDGRWEVLIFPYNADEARWLPVPDRAVLRRENPDGRPILCRTPNGFIHCFVPPAGA*
Ga0066688_109021751	3300005178	Soil	LIRAYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0066676_104945692	3300005186	Soil	MKEGRWEVLIQAWEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0066903_1003972903	3300005764	Tropical Forest Soil	MKDGRWEVLIFPYNADEARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPPGT*
Ga0066903_1007727152	3300005764	Tropical Forest Soil	MHDCAPAEARIKEGHWEVLIFPYNADNARWFPVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS*
Ga0066903_1060482661	3300005764	Tropical Forest Soil	KEGKWEVLIRSWEVGETRWVAVPDPALLRRENPDGRPIVCRTPNGFIRCFVPPPGS*
Ga0075018_104055292	3300006172	Watersheds	MKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0075424_1009216692	3300006904	Populus Rhizosphere	MNEGSWEVLILPYDGDGARWVVVPERAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0066710_1044741982	3300009012	Grasslands Soil	PRDCTPAEARLKQGHWEVFIQPYDADSRWVIVPDRAVLRRDNPDGRPILCRTPNGLIRCFVPPPAS
Ga0099830_105984802	3300009088	Vadose Zone Soil	WEVFIQPYDAGSRWVTVPDRAMLRRENPDGRPILCRTPNGFIHCFVPPPAS*
Ga0126380_106719061	3300010043	Tropical Forest Soil	GRWEVLIFPYNADDARWFPVPDHAVLRRENPDGRPILCRTPNGFIHCFVPPPDA*
Ga0126373_122219481	3300010048	Tropical Forest Soil	YNADYARWFPVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS*
Ga0126373_128604341	3300010048	Tropical Forest Soil	NADYARWFPVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS*
Ga0126381_1007850363	3300010376	Tropical Forest Soil	HDCAPAEARIKEGHWEVLIFPYNADYARWFPVPGHAVLRRENPDGRPILCHTPNGFIRCFVPPSGS*
Ga0126381_1014307743	3300010376	Tropical Forest Soil	DADHARWFAVPDHAVLRRENPDGRPILCRTPNGLIRCFVPPPGS*
Ga0126381_1023291071	3300010376	Tropical Forest Soil	MHDCAPAEARIKEGHWEVLNFPYNADYARWFPVPDHAVLRRENPDGRPILCHTPNGFIRCFVPPSGS*
Ga0126381_1047683461	3300010376	Tropical Forest Soil	VLIFPYNADYARWFPVPNHAVLRRENPDGRPILCRTPNGFIRCFVPPPSA*
Ga0126381_1051103992	3300010376	Tropical Forest Soil	HWEVLIFPYNADYARWFPVPDHAILRRENPDGRPILCRTPNGFIRCFVPPSGS*
Ga0126383_101115836	3300010398	Tropical Forest Soil	EARLKEGRWEVLIFPYNADDARWFPVPDHAVLRRENPDGRPILCRTPNGFIHCFVPPPDA
Ga0126383_111319132	3300010398	Tropical Forest Soil	MHDCAPAEARIKEGHWEVLIFPYDADHARWFPVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPPGS*
Ga0137363_117336612	3300012202	Vadose Zone Soil	IRAYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0137381_103376632	3300012207	Vadose Zone Soil	EARIKEGHWEVWIQPYEASSRWVTVPDRAMLRRDNPDGRPILCRTPNGFIRCFVPPPAS*
Ga0137379_118344531	3300012209	Vadose Zone Soil	WEVWIQPYDADSRWAIVPDRAMLRRDNPDGRPILCRTPNGLIRCFVPPPAS*
Ga0137386_103697711	3300012351	Vadose Zone Soil	PAEARIKAGRWEVWIQPYDAGSRWVIVPDRAMLRRENPDGRPILCRTPNGLIRCFVPPPAS*
Ga0137366_102149413	3300012354	Vadose Zone Soil	PRVRAEPRLVTRGDHAVLRRDNPDGRPIVCHTPNGFIRCFVPPAGT*
Ga0137384_107013231	3300012357	Vadose Zone Soil	DFTPAEARMKQGHWEVFIQPYEASSRWVIVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPPAS*
Ga0134081_101907811	3300014150	Grasslands Soil	IQAWEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT*
Ga0182036_106611341	3300016270	Soil	ARIKENGWEVLIQPYEGIARWVSVPDRAVLQRENPDGRPIICRTPNGYIRCFVPPAGT
Ga0182041_104809931	3300016294	Soil	HDCAPAKARIKEGHWEVLIFPYNADYARWFPVPDQAVLRRENPDGRPIVCRAPNGFIRCFVPPPGS
Ga0182033_105509291	3300016319	Soil	CAPADARIRDGHWEGWIFPYNADAGRWFVVEDHAVLRRENPDGRPILCRTPNGFIRCFVPPPGT
Ga0182033_116824172	3300016319	Soil	EGHWEVLIFPYNADYARWFPVPDHAVLRRENRDGRPILCRTPNGFIRCFVPPPGA
Ga0182035_107867382	3300016341	Soil	MQDGRWEVLIFSYNADSARWFPVPDRAVLRRENPDGRPILCRTPNGFVRCFVPPAGS
Ga0182035_110239203	3300016341	Soil	WEVWIFPYNADAGRWFVVEDHAVLRSENPDGRPILCRTPNGFIRCFVPPPGT
Ga0182037_103664721	3300016404	Soil	DHWEVLIFPYNADYARWFPVPDDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0182037_104999193	3300016404	Soil	VLIFPYNADYARWFPVPEDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0182039_103301563	3300016422	Soil	WEVLIFPYNADYARWFPVPDDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0182038_120648561	3300016445	Soil	RIKESGWEVLIQPYEGIARWVSVPDRAVLQRENPDGRPIICRTPNGYIRCFVPPAGT
Ga0066669_108223751	3300018482	Grasslands Soil	MKEGRWEVLIQAWEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPA
Ga0210407_1000329911	3300020579	Soil	MKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0210403_101222701	3300020580	Soil	APAEARMKEGRWEVLIRAYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0210404_102502471	3300021088	Soil	HDCGPAEARMKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0210386_108997351	3300021406	Soil	GPAEARMKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0210384_117410383	3300021432	Soil	AEARLTEGRWEVLIFPYNADHARWFPVPDHAVLQRENPDGRPILCRTPNGFIHCFVPPPG
Ga0210410_107145731	3300021479	Soil	RMKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0126371_106203242	3300021560	Tropical Forest Soil	MKDGRWEVLIFPYNADEARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPPGT
Ga0126371_117397931	3300021560	Tropical Forest Soil	APAEARIKEGHWEVLIFPYNADYASWFPVRDHDVLRRENPDGRPILCRTPNGFIRCFVQPSGS
Ga0242654_100119433	3300022726	Soil	MKEGRWEVLILTYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFVRCFVPPAGT
Ga0209648_100418289	3300026551	Grasslands Soil	HDCAPAEARMKEGRWEVLILPYDASNARWVAVPDRAMLRRENPDGRPILCRTPNGFIHCFVPPAGT
Ga0179587_103304632	3300026557	Vadose Zone Soil	MKEGRWEVLIRAYEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0209524_10833531	3300027521	Forest Soil	ARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0209799_11089131	3300027654	Tropical Forest Soil	EGRWEVLIFPYNADDARWFPVPDHAVLRRENPDGRPILCRTPNGFIHCFVPPPDA
Ga0209689_11286092	3300027748	Soil	MKEGRWEVLIQAWEVGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0209488_100906282	3300027903	Vadose Zone Soil	MNEGRWEVLIRAWEAGDARWVAVPDRALLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0209583_100557321	3300027910	Watersheds	WEVWIFPYNADAGRWFAVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPPGA
Ga0137415_104252902	3300028536	Vadose Zone Soil	MNEGRWEVLIRAWEAGDARWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0137415_104742282	3300028536	Vadose Zone Soil	MKEGRWEVLIRAYEVGDDRWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0170818_1074117332	3300031474	Forest Soil	MTEGRWEVLIRAWEVGEARWVAVPDRAVLRRENPDGRPILCQTPNGFIRCFVPPAGT
Ga0310915_104316981	3300031573	Soil	DCAPAEARIKEDHWEVLIFPYNADYARWFQVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0310915_108421461	3300031573	Soil	MQDGRWEVLIFSYNADSARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCF
Ga0318542_102613052	3300031668	Soil	RIKEGHWEVLIFPYNADYARWFPVPDQAVLRRENPDGRPIVCRAPNGFIRCFVPPPGS
Ga0318574_106049442	3300031680	Soil	ARWVSVPDRAVLQRENPDGRPIICRTPNGYIRCFVPPAGT
Ga0318574_107491181	3300031680	Soil	MHDCAPAEARMKGGHWEVSISPYNADYARWFPVPDHAVLRRENRDGRPILCRTPNGFIRCFVPPPGA
Ga0318574_109157921	3300031680	Soil	MHDCAPAQARMTAGGWEVLIQPYEGNARWVTVPDRAVLRRENQDGRPILCRTPNGFIRCFVPPVGT
Ga0318572_104876081	3300031681	Soil	MHDCAPAKARIKEGHWEVLIFPYNADYARWFPVPDQAVLRRENPDGRPIVCRAPNGFIRCFVPPPGS
Ga0306917_112171471	3300031719	Soil	CAPAEARMQDGRWEVLIFPYNADSARWFPVPDGAVLRRENPDGRPILCRTPNGYIRCFVPAPGS
Ga0318500_106318991	3300031724	Soil	VSISPYNADYARWFPVPDHAVLRRENRDGRPILCRTPNGFIRCFVPPPGT
Ga0318502_108416162	3300031747	Soil	IKEGHWEVLIFPYNADYARWFPVPEDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0318535_103255671	3300031764	Soil	PAEARIKDGGWEVLIQPYEGSARWVAVPDRTVLRRENPDGRPILCRTPNGFIRCFVPPAG
Ga0318546_100501801	3300031771	Soil	NADHARWFPVPDHAVLRRENPDGRPIVCRTPNGFIRCFVPPPGS
Ga0318546_104795942	3300031771	Soil	VLIQPYEGIARWVSVPDRAVLQRENPDGRPIICRTPNGYIRCFVPPAGT
Ga0318546_108486662	3300031771	Soil	DGPAEARIKEDHWEVLIFPYNADYARWFQVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0318543_100150311	3300031777	Soil	YEGNARWVTVPDRAVLRRENQDGRPILCRTPNGFIRCFVPPAGT
Ga0318547_107986491	3300031781	Soil	VEARIKESRWEVLIQPYEGGARWVEVPDRAVLRRENPDGRPIVCRTPSGFIRCFVPPADI
Ga0318557_100379774	3300031795	Soil	AMHDCAPAEARIKEGHWEVLIFPYNADHARWFPVPDHAVLRRENPDGRPIVCRTPNGFIRCFVPPPGS
Ga0318576_106161481	3300031796	Soil	MQDGRWEVLIFSYNADSARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGS
Ga0318550_101650052	3300031797	Soil	MHDCAPAEARIKEGHWEVLIFSYNADYARWFPVPDEAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0307473_101645242	3300031820	Hardwood Forest Soil	MKEGRWEVLIRAWEIGEPRWVAVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0318511_101254942	3300031845	Soil	MHDCAPAEARIKEGHWEVLIFPYNADYARWFPVPEDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0306919_104623631	3300031879	Soil	ARIKEDHWEVLIFPYNADYARWFQVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0318544_101418372	3300031880	Soil	AKDGPAEARIKEGHWEVLIFSYNADYARWFPVPDEAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0306925_117946222	3300031890	Soil	EARIKEGRWEVLIFPYNADYARWVGVPDRAVLRRENPDGRPILCRTPNGFIHCFVPPAGT
Ga0306923_103661241	3300031910	Soil	MKGGHWEVSISPYNADYARWFPVPDHAVLRRENRDGRPILCRTPNGFIRCFVPPPGT
Ga0306921_105388981	3300031912	Soil	MRDGHWEVWIFPYNADAGRWFVVEDHAVLRSENPDGRPILCRTPNGFIRCFVPPPGT
Ga0306921_119951231	3300031912	Soil	YEGGARWVEVPDRAVLRRENPDGRPIVCRTPNGFIRCFVPPADI
Ga0310912_114180511	3300031941	Soil	EARIKEDHWEVLIFPYNADYARWFPVPDDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0306926_116549291	3300031954	Soil	DYARWFPVPDHAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0306926_126146402	3300031954	Soil	GNARWVTVPDRAVLRRENQDGRPILCRTPNGFIRCFVPPAGT
Ga0306922_100380042	3300032001	Soil	MKGGHWEVSISPYNADYARWFPVPDHAVLRRENRDGRPILCRTPNGFIRCFVPPPGA
Ga0310911_104551401	3300032035	Soil	ARMRDGHWEVWIFPYNADAGRWFVVEDHAVLRSENPDGRPILCRTPNGFIRCFVPPPGT
Ga0310911_106583132	3300032035	Soil	MQDGRWEVLIFSYNADSARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAG
Ga0318549_104967502	3300032041	Soil	MQDGRWEVLIFPYNADSARWFPVPDGAVLRRENPDGRPILCRTPNGYIRCFVPPPGS
Ga0318532_101232391	3300032051	Soil	HDCAPAEARIKEGHWEVLIFPYNADYARWFPVPDQAVLRRENPDGRPIVCRAPNGFIRCFVPPPGS
Ga0318533_100728361	3300032059	Soil	MHDCAPAEARIKEDHWEVLIFPYNADYARWFPVPDDAVLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0318505_100235171	3300032060	Soil	AEARIKEGHWEVLIFPYNADYARWFPVPEDAVLRRENPDGRPILCRTPNGFIRCFVPPSG
Ga0318504_105733161	3300032063	Soil	IFPYNADAARWFPVPDRAVLRRENPDGRPILCRTPNGFIHCFVPPPGT
Ga0318513_102938741	3300032065	Soil	AEARIKDGGWEVLIQPYEGSARWVAVPDRTVLRRENPDGRPILCRTPNGFIRCFVPPAGT
Ga0318513_103158182	3300032065	Soil	IQPYEGIARWVSVPDRAVLQRENPDGRPIICRTPNGYIRCFVPPAGT
Ga0306924_107666562	3300032076	Soil	MKEGHWEVLIFSYNADYARWFPVPDRAVLRRDNPDGRPILCRTPNGFIRCFVPPPGT
Ga0306924_110798671	3300032076	Soil	CAPAEARIKEGHWEVLIFPYNADYASWFPVPDHALLRRENPDGRPILCRTPNGFIRCFVPPSGS
Ga0307471_1011433872	3300032180	Hardwood Forest Soil	MKEGHWEVLIAAYEVADPRWVVVPDPAVLRVENPDGRPILCRTPNGFIRCFVPPAGT
Ga0307472_1016407652	3300032205	Hardwood Forest Soil	MKEGGWEVLIRAWEVGDARWVAVPDRAVLRRENPDGRPIVCRTPNGFIRCFVPPAGT
Ga0306920_1042804072	3300032261	Soil	APAEARMQDGRWEVLIFSYNADSARWFPVPDRAVLRRENPDGRPILCRTPNGFIRCFVPPAGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099802

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences