Basic Information | |
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Family ID | F099967 |
Family Type | Metagenome |
Number of Sequences | 103 |
Average Sequence Length | 52 residues |
Representative Sequence | MLNFLDIPIPEIQVWETLQEDPRRLAIAVLARLIVQATLKNPGWEEEDHDR |
Number of Associated Samples | 77 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 40.78 % |
% of genes near scaffold ends (potentially truncated) | 24.27 % |
% of genes from short scaffolds (< 2000 bps) | 77.67 % |
Associated GOLD sequencing projects | 68 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (63.107 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (30.097 % of family members) |
Environment Ontology (ENVO) | Unclassified (63.107 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (75.728 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.51% β-sheet: 0.00% Coil/Unstructured: 59.49% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Vadose Zone Soil Tropical Forest Soil Soil Forest Soil Soil Hardwood Forest Soil Tropical Peatland Tropical Forest Soil Forest Soil Soil Termite Gut |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A1DRAFT_101060951 | 3300000597 | Forest Soil | LDIPIPEIQVWETLQEEARSWTIAVLARLIVQTTFKNPELEEEES* |
AP72_2010_repI_A001DRAFT_10399511 | 3300000893 | Forest Soil | VQRMLNFLDIPIPEIQVWETLQDEARGLAIAVLARLIMQATLENSGWEEGDHDR* |
JGI12636J13339_10258011 | 3300001154 | Forest Soil | VQRMLNFLDIPILEIQAWETLEEKQRMLAIEVLARLIVQATLKNRGLEEADHVR* |
JGI12630J15595_100950462 | 3300001545 | Forest Soil | VQRMLNFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLKNPGWEVEDHDR* |
JGI12635J15846_100462652 | 3300001593 | Forest Soil | MLNFLDIPILEIQAWETLEEKQRMLAIEVLARLIVQATLKNRGLEEADHVR* |
JGIcombinedJ26739_1001456093 | 3300002245 | Forest Soil | VQRMLNFLDIPIPEIQVWETLQEDPRRLAIAVLARLIVQATLKNPGWEEEDHDR* |
JGIcombinedJ26739_1001876032 | 3300002245 | Forest Soil | LQRMLNFLNIPISEIQVWETLEEEQRILAIAVLARLIAQASVEQQRSEEDHDR* |
Ga0066396_100165222 | 3300004267 | Tropical Forest Soil | MLNFLDIPIPEIQVWETMEEEQRILALEVLARLIVQATCRTRRPEEDHDR* |
Ga0066398_100241752 | 3300004268 | Tropical Forest Soil | MLSFLDIPIPEIQVWETLEEEQKILAIAVLARLIAQATVEPPRSEENHDR* |
Ga0066395_100090394 | 3300004633 | Tropical Forest Soil | TPILQHMLNFLDIPIPEIQVWETMEEEQRILALEVLARLIVQATCRTRRPEEDHDR* |
Ga0066388_1036481332 | 3300005332 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQEQTRSWAIAVLARLIVQATFKTPELEEEKS* |
Ga0066388_1048535561 | 3300005332 | Tropical Forest Soil | IQVWETLQEEPRRLAVAVLARLIVQATLQNPGWEVEDHDR* |
Ga0070761_110997061 | 3300005591 | Soil | RMLNFLDIPIPEIQVWETLEEEQRMLAIAVLARLIAQATVDQQRTEEDHDR* |
Ga0070762_101991552 | 3300005602 | Soil | MLNFLDITIPEIHVWEALPEEATKLAIAVLARLIIQATLNHPGSEEENRDR* |
Ga0070763_100298752 | 3300005610 | Soil | MLSFLDIPIPEIQVWETLQENLKRLAIAVLARLIVQATLKNPGWEEEDHDR* |
Ga0066905_1000483512 | 3300005713 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQDEARGLAIAVLARLIMQATLENSGWEAGDHDR* |
Ga0070766_100693633 | 3300005921 | Soil | VQRMLSFLDIPIPEIQVWETLQENLKRLAIAVLARLIVQATLKNPGWEEEDHDR* |
Ga0123357_109269922 | 3300009784 | Termite Gut | MLNFLDIPIPETQIWETLEEEQRLLAIAVLARLIVQAMVDQPRAEVDNDR* |
Ga0126374_100628891 | 3300009792 | Tropical Forest Soil | RRTPIVQRMLSFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLQNPGWEVEDHDR* |
Ga0123355_102440964 | 3300009826 | Termite Gut | LQRILNFLDIPIPEIQVWETLQEEARSWAITVLARLIVQTTFKNPELEGEES* |
Ga0123355_106881952 | 3300009826 | Termite Gut | MLNFLDIPIPEIQVWETLQEEARSWAIAVLARLIAQATSKNPELEEEES* |
Ga0126384_100340252 | 3300010046 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQDEARGLAIAVLARLIMQATLENSGWEEGDHDR* |
Ga0126384_101195012 | 3300010046 | Tropical Forest Soil | MLNFLEIPIPEIQVWETLQPEARSWAIAVLARLIVQTTFKNPELEEEES* |
Ga0126384_104580433 | 3300010046 | Tropical Forest Soil | PIPEIQVWETLEEEQKILAIAVLARLIAQATVEPPRSEENHDR* |
Ga0126373_105209732 | 3300010048 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQKDPRRLAIAVLARLIIQATLNNPGWEEGDHDR* |
Ga0126373_105590422 | 3300010048 | Tropical Forest Soil | MLNFLDIPIPEIQIWETLQEEPRKLVIAVLARLIIQATLNHPGSGEENRDR* |
Ga0126373_106138172 | 3300010048 | Tropical Forest Soil | MLSFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLKNPGWEVEDHDR* |
Ga0126373_111385951 | 3300010048 | Tropical Forest Soil | RTRRTLILQRMLNFLDIPIPEIQVWGTLQEEARSWATAVLARLIAQTTFKNPELEEEES* |
Ga0126373_113314502 | 3300010048 | Tropical Forest Soil | MLNFLDIPIPEVQVWETLEEEARSWAIAVLARLIVQTTFKNPELEEEES* |
Ga0126373_116340162 | 3300010048 | Tropical Forest Soil | MLNFLDISIPEIQIWETLEEEQRMLAIAVLARRIAQATVNQQRAEEDHDR* |
Ga0131853_109850902 | 3300010162 | Termite Gut | MLNFLDIPIPEIQVWETLQEQARSWAITVLARLIVQTTFKNPELEGEES* |
Ga0126370_118408942 | 3300010358 | Tropical Forest Soil | MLNFLDISIPEIQIWETLEEEQRMLAIAVLARLIAQATVNQQRAEEDHDR* |
Ga0126376_108247912 | 3300010359 | Tropical Forest Soil | ALPSPAATINLSTRRTPIVQRMLSFLDIPIPEIQVWETLQDEARGLAIAVLARLIMQATLENSGWEAGDHDR* |
Ga0126376_115082063 | 3300010359 | Tropical Forest Soil | MLSFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLQNPGWEVEDHDR* |
Ga0126376_124574651 | 3300010359 | Tropical Forest Soil | MLNFLDIPIPEVQVWETLEEEARSWAIAVLARLIVQTTFKNPELEEEES |
Ga0126372_102008682 | 3300010360 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLQNPGWEVEDHDR* |
Ga0126378_104201662 | 3300010361 | Tropical Forest Soil | MLNFLEIPIPEIQVWETLQQEARSWAIAVLARLIVQTTFKNPELEEEES* |
Ga0126378_115700572 | 3300010361 | Tropical Forest Soil | MLNFLDIPIPEIQVWETLQEEARSWAIAVLARLIVQTTFKNPELEEEES* |
Ga0126377_105172601 | 3300010362 | Tropical Forest Soil | VQHMLNFLDIPFPEIHVWETLQDEARGLAIAVLARLIMQATLENSGWEAGDHDR* |
Ga0126379_102504402 | 3300010366 | Tropical Forest Soil | MLNFLEIPIPEIQVWETLQQEARGWAIAVLARLIVQTTFKNPELEEEES* |
Ga0126379_106637792 | 3300010366 | Tropical Forest Soil | MLNFLDISIPEIQVWETLAEEQRMLAIAVLARVIAQAPVDQQRSEEDNDR* |
Ga0136643_107008772 | 3300010369 | Termite Gut | MLNFLDIPIPEIQVWETLQEEARSWAITVLARLIVQTTFKNPELEGEES* |
Ga0126381_1004005983 | 3300010376 | Tropical Forest Soil | MLNFLDIAIPEIQVWETLQEEARSWAIAGLARLIVQTTFKNPKLEEEES* |
Ga0126381_1007950951 | 3300010376 | Tropical Forest Soil | PPSPGAMRNLSTRRTPSLQRMLNFLDIPIPEIQVWETLPEEPRKLVIAVLARLIIQATLNHPGSGEENRDR* |
Ga0126381_1031227741 | 3300010376 | Tropical Forest Soil | MLSFLDIPIPEIQVWETLQEEPRRLAVAVLARLIAQVTLKNPGWEVEDHDR* |
Ga0126381_1033505731 | 3300010376 | Tropical Forest Soil | MLSFLDIPIPEIQIWETLQEEPRKLVIAVLARLIIQATLNHPESGEENRDR* |
Ga0126383_110070432 | 3300010398 | Tropical Forest Soil | MLNFLDIPILEIQIWETLREEPRKLVIAVLARLIIQATRNHPGSGEENHDR* |
Ga0137399_112521182 | 3300012203 | Vadose Zone Soil | RTPIVQRMLNFLDIPIPKIQVWETLQEDPRRLAIVVLARLIVQATLKNPGWEEEDHDR* |
Ga0137362_115133421 | 3300012205 | Vadose Zone Soil | MLNFLDIPIPKIQVWETLQEDPRRLAIVVLARLIVQATLKNPGWEEEDHDR* |
Ga0126375_100267211 | 3300012948 | Tropical Forest Soil | FLDIPIPEIQVWETLQYEARGLAIAVLARLIMQATLENSGWEAGDHDR* |
Ga0182039_100965721 | 3300016422 | Soil | MRNLSTRRTPSLQRMLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLILQATLNHPGSGEENRDR |
Ga0187781_100824372 | 3300017972 | Tropical Peatland | VQRMLNFLDISIPEIQIWETLEEEQKMLAIAVLARLIAQATVNQQRAEEDHDR |
Ga0187782_100621362 | 3300017975 | Tropical Peatland | MLNFLDISIPEIQIWETLEEEQKMLAIAVLARLIAQATVNQQRAEEDHDR |
Ga0210407_100450862 | 3300020579 | Soil | MLNFLDITIPEIHVWEALPEEATKLAIAVLARLIIQATLNHPGSEEENRDR |
Ga0210395_102072742 | 3300020582 | Soil | MLSFLDIPIPEIQVWETLQENLKRSAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0210406_108119272 | 3300021168 | Soil | LQRMLNFLDIPIPEIQVWETLQEEARCWAIAVLARLIVQTTFKNPELEEEES |
Ga0210397_105057332 | 3300021403 | Soil | VQRMLNFLDIPIPKTPIWETLEEEQRALAIAALARLIGQATVDQQRLGEDHDR |
Ga0210383_103063182 | 3300021407 | Soil | VQRMLNFLDTPIPEMQAWETLEEKQRMLAIAVLARLMAQATFKDRGLEEKDHDR |
Ga0210394_106034211 | 3300021420 | Soil | RRTPIVQRILNFLDMPIPEIQVWETLQEEPRRLAIVVLARLIVQATLKNPGWEGEDHDR |
Ga0210384_103354102 | 3300021432 | Soil | APPSPAATRNLSKRRTPIVQRMLSFLDIPIPEIQVWETLQENLKRSAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0210384_105584922 | 3300021432 | Soil | STRRTPIVQRMLSFLDTPIPEMQAWETLEEKQRILAIAVLARLMVQATFKDRGLEEKDHD |
Ga0210384_108702271 | 3300021432 | Soil | VQRILSFLDTPIPEMQAWETLEEKQRILAIAVLARLMVQATFKDRG |
Ga0126371_101073322 | 3300021560 | Tropical Forest Soil | MLNFLDIPIPEIQVWETMEEEQRILALEVLARLIVQATCRTRRPEEDHDR |
Ga0126371_102648432 | 3300021560 | Tropical Forest Soil | LQRMLNFLDIPIPEIQVWETLQEQTRSWAIAVLARLIVQATFKTPELEEEKS |
Ga0126371_103280592 | 3300021560 | Tropical Forest Soil | MLSFLDIPIPEIQVWETLQEEPRRLAVAVLARLIVQATLKNPGWEVEDHDR |
Ga0126371_105160692 | 3300021560 | Tropical Forest Soil | LQRMLNFLDIPIPEIQVWGTLQEEARSWATAVLARLIAQTTFKNPELEEEES |
Ga0126371_133443582 | 3300021560 | Tropical Forest Soil | MRRTLILQRMLNFLEIPIPEIQVWETLQQEARSWAIAVLARLIVQTTFKNPELEEEES |
Ga0257168_11558321 | 3300026514 | Soil | MLNFLDMPIPEIQVWETLQSEPRRLAIVVLARLIVQATLKNPGSEGEDRDR |
Ga0208732_10108722 | 3300026984 | Forest Soil | VQRMLSFLDIPIPEIQVWETLQENLKRSAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0208604_10108392 | 3300027090 | Forest Soil | QRMLSFLDIPIPEIQVWETLQENLKRSAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0209527_10424072 | 3300027583 | Forest Soil | MLNFLDIPIPEIQVWETLQEDPRRLAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0209528_10429822 | 3300027610 | Forest Soil | MLNFLNIPISEIQVWETLEEEQRILAIAVLARLIAQASVEQQRSEEDHDR |
Ga0209528_10616632 | 3300027610 | Forest Soil | VQRMLNFLDIPIPEIQVWETLQEDPRRLAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0209330_11604022 | 3300027619 | Forest Soil | LQRMLNFLNIPISEIQVWETLEEEQRILAVAVLARLIAQASVEQQRSEEDHDR |
Ga0209799_10106982 | 3300027654 | Tropical Forest Soil | VQRMLNFLDIPIPEIQVWETLQDEARGLAIAVLARLIMQATLENSGWEAGDHDR |
Ga0209799_10916962 | 3300027654 | Tropical Forest Soil | LQRMLNFLEIPIPEIQVWETLQQEARGWAIAVLALLIVQTTFKNPELEEEES |
Ga0209118_10300982 | 3300027674 | Forest Soil | VQRMLNFLDIPILEIQAWETLEEKQRMLAIEVLARLIVQATLKNRGLEEADHVR |
Ga0209011_10114311 | 3300027678 | Forest Soil | MLNFLDIPILEIQAWETLEEKQRMLAIEVLARLIVQATLKNRGLEEADHVR |
Ga0209274_104927042 | 3300027853 | Soil | MLNFLDIPIPEIQVWETLEEEQRMLAIAVLARLIAQATVDQQRTEEDHDR |
Ga0209275_106335212 | 3300027884 | Soil | VQRILNFLDMPIPEIQVWETLQEEPRRLAIVVLARLIVQATLKNPGWEGEDHDR |
Ga0209380_100289792 | 3300027889 | Soil | VQRMLSFLDIPIPEIQVWETLQENLKRLAIAVLARLIVQATLKNPGWEEEDHDR |
Ga0170834_1081609052 | 3300031057 | Forest Soil | VQRMLSFLDIPIPEIQVWETLQENLRRLSIAVLARLIVQATLKNPRWKEEDHDR |
Ga0170824_1042755662 | 3300031231 | Forest Soil | MLSFLDIPIPEIQVWETLQENLRRLAITVLARLIVQATLKHPGWEEQDHDR |
Ga0170824_1133204923 | 3300031231 | Forest Soil | VQRMLNFLDIPIPEMQLWETLAEEPRILAIQVLARLIFQVTVHPQRPEEDHDR |
Ga0170820_163372832 | 3300031446 | Forest Soil | VQRMLSFLDIPIPEIQVWETLQENLRRLAITVLARLIVQATLKNPGWEEQDHDR |
Ga0170818_1050998573 | 3300031474 | Forest Soil | MLSFLDIPIPEIQVWETLQENLRRLAITVLARLIVQATLKNPGWEEQDHDR |
Ga0318516_100598612 | 3300031543 | Soil | MLNFLDIPIPEIQVWETLHEEPRSRAIAVLARLIVQASFENPELEEEDHDR |
Ga0318538_100945712 | 3300031546 | Soil | MLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLIIQATLNHPGSGEENRDR |
Ga0318528_107525581 | 3300031561 | Soil | LQRMLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLIIQATLNHPGSGEENR |
Ga0318574_103740193 | 3300031680 | Soil | MLNFLDIPIPEIQVWETLHEEPRSRAIAVLARLIVQASFENPELEEEDHD |
Ga0318496_102620442 | 3300031713 | Soil | LQRMLNFLDIPIPEIQVWETLHEEPRSRAIAVLARLIVQASFENPELEEEDHDR |
Ga0307476_105532552 | 3300031715 | Hardwood Forest Soil | LQRMLNFLEMPIPEMQVWETLEEEQTISAITVLARLIAQATIERAEEEHDR |
Ga0307474_101510871 | 3300031718 | Hardwood Forest Soil | MLNFLNIPISEIQVWETLEEEQRILAVAVLARLIAQASEQQRSEEDHDR |
Ga0318501_103743462 | 3300031736 | Soil | RRTPSLQRMLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLIIQATLNHPGSGEENRDR |
Ga0307477_100953122 | 3300031753 | Hardwood Forest Soil | VLQRMLNFLDIPIPEIQVWETLQEEQRILTITVLARLIAQATVDQPPRLEEDHDR |
Ga0307475_100420232 | 3300031754 | Hardwood Forest Soil | MLNFLNIAIPEIRVWETLQEEATKLAIAVLARLVIQATLNHPGSEEENRDR |
Ga0318503_101073041 | 3300031794 | Soil | DIPIPEIQVWETLHEEPRSRAIAVLARLIVQASFENPELEEEDHDR |
Ga0306919_101429662 | 3300031879 | Soil | MLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLILQATLNHPGSGEENRDR |
Ga0306926_113332712 | 3300031954 | Soil | LQRMLNFLDIPIPEVQVWETLEEEARSWAIAVLARLIVQTTFKNPELEEEES |
Ga0307479_100727462 | 3300031962 | Hardwood Forest Soil | MLNFLEMPIPEMQVWETLEEEQTISAITVLARLIAQATIERAEEEHDR |
Ga0318575_100187281 | 3300032055 | Soil | PEIQVWETLHEEPRSRAIAVLARLIVQASFENPELEEEDHDR |
Ga0306924_119893811 | 3300032076 | Soil | LQRMLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLIIQATLNH |
Ga0306920_1000809932 | 3300032261 | Soil | MRNLSTRRTPSLQRMLNFLDIPIPEIQVWETLQEEPRKLVIAVLARLIIQATLNHPGSGEENRDR |
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