Metagenome Family F100004

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100004
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	49 residues
Representative Sequence	MDIEIDEESVKIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFDIPI
Number of Associated Samples	39
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.82 %
% of genes near scaffold ends (potentially truncated)	19.42 %
% of genes from short scaffolds (< 2000 bps)	66.02 %
Associated GOLD sequencing projects	36
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (85.437 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (52.427 % of family members)
Environment Ontology (ENVO)	Unclassified (85.437 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.408 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 19.23% β-sheet: 21.79% Coil/Unstructured: 58.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF05869	Dam	14.56
PF00145	DNA_methylase	1.94
PF13659	Obsolete Pfam Family	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
All Organisms	root	All Organisms	14.56 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Viruses	superkingdom	All Organisms → Viruses	7.77 %
cellular organisms	root	All Organisms → cellular organisms	6.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.80 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	4.85 %
unclassified bacterial viruses	clade	All Organisms → Viruses → unclassified bacterial viruses	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	85.44 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	5.83 %
Circular genetic element sp.	species	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	4.85 %
Bacteriophage sp.	species	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	2.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001450\|JGI24006J15134_10006353	Not Available	6073	Open in IMG/M
3300001450\|JGI24006J15134_10010599	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	4543	Open in IMG/M
3300001450\|JGI24006J15134_10010658	Not Available	4525	Open in IMG/M
3300001450\|JGI24006J15134_10012160	Not Available	4181	Open in IMG/M
3300001450\|JGI24006J15134_10014240	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	3802	Open in IMG/M
3300001450\|JGI24006J15134_10018374	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	3262	Open in IMG/M
3300001450\|JGI24006J15134_10020978	Not Available	3007	Open in IMG/M
3300001450\|JGI24006J15134_10024786	Not Available	2705	Open in IMG/M
3300001450\|JGI24006J15134_10032006	Not Available	2297	Open in IMG/M
3300001450\|JGI24006J15134_10037927	Not Available	2060	Open in IMG/M
3300001450\|JGI24006J15134_10038907	Not Available	2027	Open in IMG/M
3300001450\|JGI24006J15134_10039139	Not Available	2019	Open in IMG/M
3300001450\|JGI24006J15134_10049528	Not Available	1726	Open in IMG/M
3300001450\|JGI24006J15134_10061759	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1477	Open in IMG/M
3300001450\|JGI24006J15134_10064878	Not Available	1426	Open in IMG/M
3300001589\|JGI24005J15628_10025442	Not Available	2515	Open in IMG/M
3300001589\|JGI24005J15628_10060149	Not Available	1421	Open in IMG/M
3300004460\|Ga0066222_1427762	Not Available	669	Open in IMG/M
3300004461\|Ga0066223_1215740	Not Available	820	Open in IMG/M
3300005239\|Ga0073579_1246647	Not Available	841	Open in IMG/M
3300006916\|Ga0070750_10143087	Not Available	1085	Open in IMG/M
3300007276\|Ga0070747_1293765	Not Available	559	Open in IMG/M
3300009420\|Ga0114994_10058501	Not Available	2650	Open in IMG/M
3300009420\|Ga0114994_10060094	Not Available	2610	Open in IMG/M
3300009425\|Ga0114997_10649728	Not Available	553	Open in IMG/M
3300009425\|Ga0114997_10700044	Not Available	530	Open in IMG/M
3300009705\|Ga0115000_10869656	Not Available	552	Open in IMG/M
3300010392\|Ga0118731_101906456	Not Available	718	Open in IMG/M
3300017710\|Ga0181403_1006693	Not Available	2510	Open in IMG/M
3300017710\|Ga0181403_1015435	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1633	Open in IMG/M
3300017713\|Ga0181391_1128888	Not Available	565	Open in IMG/M
3300017717\|Ga0181404_1003036	Not Available	4722	Open in IMG/M
3300017717\|Ga0181404_1007595	Not Available	2915	Open in IMG/M
3300017717\|Ga0181404_1026698	Not Available	1484	Open in IMG/M
3300017720\|Ga0181383_1179246	Not Available	565	Open in IMG/M
3300017731\|Ga0181416_1024275	Not Available	1423	Open in IMG/M
3300017732\|Ga0181415_1120072	Not Available	592	Open in IMG/M
3300017733\|Ga0181426_1087754	Not Available	623	Open in IMG/M
3300017733\|Ga0181426_1127065	Not Available	514	Open in IMG/M
3300017735\|Ga0181431_1145898	Not Available	526	Open in IMG/M
3300017743\|Ga0181402_1088552	Not Available	806	Open in IMG/M
3300017750\|Ga0181405_1010635	Not Available	2630	Open in IMG/M
3300017755\|Ga0181411_1187301	Not Available	585	Open in IMG/M
3300017757\|Ga0181420_1069331	Not Available	1111	Open in IMG/M
3300017757\|Ga0181420_1229603	Not Available	531	Open in IMG/M
3300017758\|Ga0181409_1236599	Not Available	520	Open in IMG/M
3300017764\|Ga0181385_1044475	Not Available	1387	Open in IMG/M
3300017765\|Ga0181413_1059267	Not Available	1181	Open in IMG/M
3300017765\|Ga0181413_1170830	Not Available	653	Open in IMG/M
3300017765\|Ga0181413_1205867	Not Available	587	Open in IMG/M
3300017767\|Ga0181406_1004361	Not Available	4773	Open in IMG/M
3300017767\|Ga0181406_1068809	Not Available	1085	Open in IMG/M
3300017767\|Ga0181406_1187383	Not Available	616	Open in IMG/M
3300017769\|Ga0187221_1196190	Not Available	584	Open in IMG/M
3300017771\|Ga0181425_1061614	Not Available	1215	Open in IMG/M
3300017775\|Ga0181432_1210592	Not Available	610	Open in IMG/M
3300017779\|Ga0181395_1181021	Not Available	659	Open in IMG/M
3300017786\|Ga0181424_10408687	Not Available	551	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10462869	Not Available	614	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10397885	Not Available	694	Open in IMG/M
3300025138\|Ga0209634_1011522	Not Available	5282	Open in IMG/M
3300025138\|Ga0209634_1012922	Not Available	4921	Open in IMG/M
3300025138\|Ga0209634_1013152	Not Available	4872	Open in IMG/M
3300025138\|Ga0209634_1014821	Not Available	4526	Open in IMG/M
3300025138\|Ga0209634_1014882	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	4515	Open in IMG/M
3300025138\|Ga0209634_1042129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2316	Open in IMG/M
3300025138\|Ga0209634_1042173	Not Available	2315	Open in IMG/M
3300025138\|Ga0209634_1047965	Not Available	2128	Open in IMG/M
3300025138\|Ga0209634_1057325	Not Available	1890	Open in IMG/M
3300025138\|Ga0209634_1061908	All Organisms → Viruses → unclassified bacterial viruses → Bacteriophage sp.	1796	Open in IMG/M
3300025138\|Ga0209634_1124491	Not Available	1094	Open in IMG/M
3300025138\|Ga0209634_1144725	Not Available	978	Open in IMG/M
3300025138\|Ga0209634_1155183	Not Available	928	Open in IMG/M
3300025138\|Ga0209634_1165677	Not Available	883	Open in IMG/M
3300025138\|Ga0209634_1194612	Not Available	781	Open in IMG/M
3300025138\|Ga0209634_1264675	Not Available	613	Open in IMG/M
3300025138\|Ga0209634_1281704	Not Available	582	Open in IMG/M
3300025168\|Ga0209337_1015040	Not Available	4689	Open in IMG/M
3300025168\|Ga0209337_1032115	Not Available	2898	Open in IMG/M
3300025168\|Ga0209337_1040952	Not Available	2479	Open in IMG/M
3300025168\|Ga0209337_1064202	Not Available	1841	Open in IMG/M
3300025168\|Ga0209337_1065569	Not Available	1816	Open in IMG/M
3300025168\|Ga0209337_1086628	Not Available	1500	Open in IMG/M
3300025168\|Ga0209337_1101385	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1340	Open in IMG/M
3300025168\|Ga0209337_1106273	Not Available	1296	Open in IMG/M
3300025168\|Ga0209337_1109571	All Organisms → cellular organisms → Bacteria	1268	Open in IMG/M
3300025168\|Ga0209337_1134029	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1097	Open in IMG/M
3300025168\|Ga0209337_1138351	Not Available	1072	Open in IMG/M
3300025168\|Ga0209337_1149893	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	1011	Open in IMG/M
3300025168\|Ga0209337_1207029	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	791	Open in IMG/M
3300027779\|Ga0209709_10016927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	4923	Open in IMG/M
3300027779\|Ga0209709_10017016	Not Available	4904	Open in IMG/M
3300031519\|Ga0307488_10027114	Not Available	4584	Open in IMG/M
3300031519\|Ga0307488_10487216	Not Available	740	Open in IMG/M
3300033742\|Ga0314858_000664	Not Available	4510	Open in IMG/M
3300033742\|Ga0314858_020002	Not Available	1463	Open in IMG/M
3300033742\|Ga0314858_051206	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1001	Open in IMG/M
3300033742\|Ga0314858_072121	Not Available	860	Open in IMG/M
3300033742\|Ga0314858_085700	Not Available	793	Open in IMG/M
3300033742\|Ga0314858_095621	Not Available	752	Open in IMG/M
3300033742\|Ga0314858_124405	Not Available	660	Open in IMG/M
3300033742\|Ga0314858_135993	Not Available	630	Open in IMG/M
3300033742\|Ga0314858_167364	Not Available	565	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	53.40%
Strait	Environmental → Aquatic → Marine → Strait	29.13%
Coastal	Environmental → Aquatic → Marine → Coastal	15.53%
Inlet	Environmental → Aquatic → Marine → Inlet	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	53.40%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	29.13%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.56%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.94%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.97%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	52.43%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	29.13%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	8.74%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.94%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.94%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.94%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.94%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.97%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental	Open in IMG/M
3300004460	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300004461	Marine viral communities from Newfoundland, Canada BC-2	Environmental	Open in IMG/M
3300005239	Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of Maine	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental	Open in IMG/M
3300017710	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28	Environmental	Open in IMG/M
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental	Open in IMG/M
3300017717	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25	Environmental	Open in IMG/M
3300017720	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017732	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11	Environmental	Open in IMG/M
3300017733	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017750	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29	Environmental	Open in IMG/M
3300017755	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09	Environmental	Open in IMG/M
3300017757	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22	Environmental	Open in IMG/M
3300017758	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30	Environmental	Open in IMG/M
3300017764	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11	Environmental	Open in IMG/M
3300017765	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28	Environmental	Open in IMG/M
3300017767	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20	Environmental	Open in IMG/M
3300017769	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300027779	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24006J15134_100063533	3300001450	Marine	LDIEIEEDKVIIESGDTKLQIEGIISKKHGIILVSLILAILGIKEFNIPI*
JGI24006J15134_100105998	3300001450	Marine	LDIDIEEDKVVIQAGDTKVQVKGILSKKHALILVSLIISILGIKEFDIPI*
JGI24006J15134_100106581	3300001450	Marine	VDIEIEEDKVVIESGDTKISVSGILSKKHALILVSLILAILGIKEFNIPI*
JGI24006J15134_1001216011	3300001450	Marine	MRDIMDIDITEEKVVIEADGSKVEIKGILSKKHFFILVSLTLAILGIKEFNIPI*
JGI24006J15134_100142404	3300001450	Marine	LDIEIDEESVKIEADGSTVEIKGILTKKHAVILISLILGILGVSEFDFVP*
JGI24006J15134_100183747	3300001450	Marine	VDIEIEEDKVVIESGDTKVQIKGVLSKKHGIILVSLILAILGIKEFDIPV*
JGI24006J15134_100209782	3300001450	Marine	MVKIMLRDIMDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPV*
JGI24006J15134_100247864	3300001450	Marine	VDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLILAILGIKEFDIPI*
JGI24006J15134_100320067	3300001450	Marine	LDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGIREFNIPL*
JGI24006J15134_100379272	3300001450	Marine	VRDFLDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLILAILGIKEFDIPI*
JGI24006J15134_100389071	3300001450	Marine	MDIDIEEDKIVIQDGNTKLSLQGVLSKKHALLLITLILGLLGISEFDFTP*
JGI24006J15134_100391392	3300001450	Marine	LDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFAL*
JGI24006J15134_100495283	3300001450	Marine	VDIEIEEDKVIIESGDTKVQLQGVLSKKHAIILVSLTVAILGIKEFNIPI*
JGI24006J15134_100617592	3300001450	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFAF*
JGI24006J15134_100648784	3300001450	Marine	LDIEIDPESVKIEADGSTVEIKGILTKKHALLLISLILVSLGISEFEIPL*
JGI24005J15628_100254424	3300001589	Marine	LDIEIDPESVKIEADGSTVEIKGILSKKHALLLISLILGILGIKEFNIPL*
JGI24005J15628_100601491	3300001589	Marine	VIESGETKIQVKGILSKKHAIILVSLVMAILGINEFNIPI*
Ga0066222_14277621	3300004460	Marine	MDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPI*
Ga0066223_12157402	3300004461	Marine	MVKKIMRDIMDIEIDEESVKIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPI*
Ga0073579_12466471	3300005239	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGIREFNIPL*
Ga0070750_101430871	3300006916	Aqueous	LDIEIDEESVKIEADGSTVEIKGILTKKHAVILISLILGLLGISEFDFVP*
Ga0070747_12937652	3300007276	Aqueous	MDIEIDEESVKIEADGSTVEIKGILTKKHAVILISLILGILGVSEFDFVP*
Ga0114994_100585015	3300009420	Marine	MDIEIEPESITIEEGETKIQISGILSKKHAIILVGLILALLGIKEFDIPI*
Ga0114994_100600945	3300009420	Marine	VDIDIEEDKIVIQDGDTKLSLQGVLSKKHAIILVSLILALLGVKEFQI*
Ga0114997_106497281	3300009425	Marine	MRDIMDIDIEEEKIVIQSGDTKIQVKGVLSKKHGIILVSLILAILGIKEFDIPI*
Ga0114997_107000442	3300009425	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFAL*
Ga0115000_108696562	3300009705	Marine	MDIEIDEESVKIEADGSTVEIKGILSKKHAVILISLILAILGIKEFNIPL*
Ga0118731_1019064562	3300010392	Marine	MDIDIEEDKVIIESGDTKISVSGILSRKHAIILVGLIMAILGIKEFNIPI*
Ga0181403_10066935	3300017710	Seawater	MDIEIEEDKVIIESGDTKIQVKGVLSKKHGIILVSLILTILGIKEFHIPI
Ga0181403_10154352	3300017710	Seawater	VGVIQVDIEIEDDKVVIESGETKVQIYGVLSKKHAIILVSAILAILGIKEFDIPI
Ga0181391_11288882	3300017713	Seawater	SVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFDIPL
Ga0181404_10030366	3300017717	Seawater	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFNFAF
Ga0181404_10075952	3300017717	Seawater	MDIEIEPESVTIEADGSKVQIKGILTKKHAIILVSLIISILGIKEFDIPL
Ga0181404_10266983	3300017717	Seawater	MDIEIDEESVTIEADGSKVTVSGILSKKHAIILVGLVMAILGIKEFNIPI
Ga0181383_11792461	3300017720	Seawater	KIVIQSGDTKIQVKGIISKKHFFILVSLTLAILGIKEFDIPI
Ga0181416_10242756	3300017731	Seawater	MDIEIEPESVTIEADGSKVTVSGILSKKHAVILVGLILAILGIKEFNIPI
Ga0181415_11200722	3300017732	Seawater	MDIEIEEDKVIIESGETKISVSGILSKKHAIILVSLI
Ga0181426_10877542	3300017733	Seawater	LDIEIEEDKVIIESGDTKLQIKGILGKKHAIILVSLILAILGIKEFNIPV
Ga0181426_11270652	3300017733	Seawater	LDIEIDEESVKIEADGSTVEIKGILTKKHAVILISLILGILGISEFDFVP
Ga0181431_11458981	3300017735	Seawater	MDIEIDEESVKIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFDIPI
Ga0181402_10885522	3300017743	Seawater	LDIEIDPESVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFDIPL
Ga0181405_10106351	3300017750	Seawater	LDIEIDEESVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFDIPL
Ga0181411_11873012	3300017755	Seawater	MDIEIEEDKVIIESGDTKIQVKGVLSKKHGIILVSLILTILGIKEFHI
Ga0181420_10693314	3300017757	Seawater	MDIEIEEDKVIIESGDTKIQVKGVLSKKHGIILVSLIL
Ga0181420_12296031	3300017757	Seawater	MDIEIEPESVTIEADGSKVEIKGILSKKHAIILVGLVMAILGIKEFNIPI
Ga0181409_12365991	3300017758	Seawater	MDIEIEPESVTIEADGSKVQIKGILTKKHAIILVSLIISILGISEFDIPL
Ga0181385_10444752	3300017764	Seawater	MDIEIEEDKVIIESGETKISVSGILSKKHAIILVSLILAILGIKEFDIPI
Ga0181413_10592673	3300017765	Seawater	MDIEIEEDKVIIESGETKLQIKGIISKKHGIILVS
Ga0181413_11708301	3300017765	Seawater	QQGNSGAIXLDIEIDEESVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFDIPL
Ga0181413_12058671	3300017765	Seawater	VDIEIEDDKVVIESGETKVQIYGVLSKKHAIILVSAILAILGIKEFDIPI
Ga0181406_10043617	3300017767	Seawater	LDIEIDEESVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFNIPL
Ga0181406_10688092	3300017767	Seawater	MDIEIDEESVKIEADGSKVQIKGILTKKHAIILVSLIISILGISEFDIPL
Ga0181406_11873832	3300017767	Seawater	KMDIEIEEDKVIIESGETKISVSGILSKKHAIILVSLILAILGIKEFDIPL
Ga0187221_11961902	3300017769	Seawater	MDIEIEEDKVIIESGETKISVSGILSKKHAIILVSLILAILG
Ga0181425_10616142	3300017771	Seawater	MDIEIDEESVKIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPI
Ga0181432_12105922	3300017775	Seawater	LDIEIEPESVTIEADGSKVTVSGILSKKHAVILVSLILAILGIKEFDIPI
Ga0181395_11810211	3300017779	Seawater	IVIQSGDTKIQVKGVLSKKHGIILVSLILAILGIKEFDIPI
Ga0181424_104086872	3300017786	Seawater	EIDPESVKIEADGSTVEIKGILTKKHAVLLISLILGILGIREFDIPL
(restricted) Ga0255048_104628692	3300024518	Seawater	VIGVKMDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPI
(restricted) Ga0255047_103978851	3300024520	Seawater	MDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIP
Ga0209634_10115226	3300025138	Marine	MRDIMDIDITEEKVVIEADGSKVEIKGILSKKHFFILVSLTLAILGIKEFNIPI
Ga0209634_101292212	3300025138	Marine	VRDFLDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLILAILGIKEFDIPI
Ga0209634_10131525	3300025138	Marine	VDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLILAILGIKEFDIPI
Ga0209634_101482110	3300025138	Marine	VGVIQVDIEIDEDKVVIESGETKIQVKGILSKKHAIILVSLVMAILGINEFNIPI
Ga0209634_101488210	3300025138	Marine	VDIEIEEDKVIIESGDTKVQLQGVLSKKHAIILVSLTVAILGIKEFNIPI
Ga0209634_10421293	3300025138	Marine	LDIDIEEDKVVIQAGDTKVQVKGILSKKHALILVSLIISILGIKEFDIPI
Ga0209634_10421734	3300025138	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFAL
Ga0209634_10479653	3300025138	Marine	LDIEIEEDKVIIESGDTKLQIEGIISKKHGIILVSLILAILGIKEFNIPI
Ga0209634_10573254	3300025138	Marine	LDIEIDPESVKIEADGSTVEIKGILSKKHALLLISLILGILGIKEFNIPL
Ga0209634_10619085	3300025138	Marine	VDIEIEEDKVVIESGDTKVQIKGVLSKKHGIILVSLILAILGIKEFDIPV
Ga0209634_11244913	3300025138	Marine	MDIDIEEDKIVIQDGNTKLSLQGVLSKKHALLLITLILGLLGISEFDFTP
Ga0209634_11447251	3300025138	Marine	IEADGSKVEIKGILTKKHALLLISLILVSLGISEFEIPL
Ga0209634_11551831	3300025138	Marine	MDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLIIGILGIKEFNIPI
Ga0209634_11656771	3300025138	Marine	MDIDIEDEKIVIQSGDTKIQVQGIISRKHGIILVSLILAILGIKEFNIPI
Ga0209634_11946122	3300025138	Marine	LIGVKMDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFNIPI
Ga0209634_12646751	3300025138	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGILGVSEFDFVP
Ga0209634_12817041	3300025138	Marine	MDIDIEEEKIVIQSGDTKIQVKGVLSKKHGIILVSLILAILGIKEFNIPI
Ga0209337_101504010	3300025168	Marine	VDIEIEEDKVVIESGDTKISVSGILSKKHALILVSLILAILGIKEFNIPI
Ga0209337_10321152	3300025168	Marine	MDIEIDEESVKIEADGSKVEIKGILTKKHALLLISLILVSLGISEFEIPL
Ga0209337_10409524	3300025168	Marine	LDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGIREFNIPL
Ga0209337_10642025	3300025168	Marine	VRDFLDIEIDEESVKIEADGSTVEIKGILSKKHAIILVSLILAILGI
Ga0209337_10655692	3300025168	Marine	MDIEIDEESVTIEADGSKVTVSGILSKKHAIIVVGLVMAILGIKEFDIPI
Ga0209337_10866283	3300025168	Marine	MMDIDIEEEKIVIQSGETKIQVKGILSKKHALILVSLILAILGIKEFNIPI
Ga0209337_11013852	3300025168	Marine	VDIEIEEDKVIIESGDTKVQIKGVLSKKHGIILVSLILAILGIKEFDIPV
Ga0209337_11062734	3300025168	Marine	IDPESVKIEADGSTVEIKGILSKKHALLLISLILGILGIKEFNIPL
Ga0209337_11095713	3300025168	Marine	MLRDIMDIDITEEKVVIESGETKIQVKGVLSKKHGIILVSLILAILGIKEFNIPV
Ga0209337_11340293	3300025168	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFAF
Ga0209337_11383512	3300025168	Marine	LDIEIDPESVKIEADGSTVEIKGILTKKHALLLISLILVSLGISEFEIPL
Ga0209337_11498932	3300025168	Marine	MDIEIDEESVKIEADGSTVEIKGILTKKHALMLIALILGLLGISEFDFAF
Ga0209337_12070292	3300025168	Marine	MDIDIEEEKIVIQSGDTKIQVKGVLSKKHGIILVSLILAILGIKEFDIPL
Ga0209709_1001692710	3300027779	Marine	MDIEIEPESITIEEGETKIQISGILSKKHAIILVGLILALLGIKEFDIPI
Ga0209709_100170162	3300027779	Marine	MEVIQVDIDIEEDKIVIQDGDTKLSLQGVLSKKHAIILVSLILALLGVKEFQI
Ga0307488_1002711411	3300031519	Sackhole Brine	VGVILVDIDIEEDKIIIQDGETTLSIKGVLSRKHAIILVGLIIGILGIKDFDIPI
Ga0307488_104872161	3300031519	Sackhole Brine	VGVIQVDIEIEEDKVVIESGETKVQIKGILSKKHAVILVSAILAILGIKEFNIP
Ga0314858_000664_4168_4320	3300033742	Sea-Ice Brine	VDIDIEEDKIIIQDGETTLSIKGVLSRKHAIILVGLIIGILGIKDFDIPI
Ga0314858_020002_1338_1463	3300033742	Sea-Ice Brine	MDIEIEEDKVIIESGETKISVSGILSKKHAIILLSLILAILG
Ga0314858_051206_7_159	3300033742	Sea-Ice Brine	VDIEIEDDKVVIESGDTKVQIRGVLSKKHAIILVSAILAILGIKEFDIPI
Ga0314858_072121_2_133	3300033742	Sea-Ice Brine	MDIEIEEDKLIIESGETKISVSGILSKKHAIILLSLILAILGIK
Ga0314858_085700_230_382	3300033742	Sea-Ice Brine	VDIDIEEDKIIIQDGNTSLSIKGVLSKKHAIILVGLIIAILGIKDFNIPI
Ga0314858_095621_86_238	3300033742	Sea-Ice Brine	MDIEIDEESVKIEADGSTVEIKGILTKKHAIILISLILGLLGISEFDFVP
Ga0314858_124405_41_205	3300033742	Sea-Ice Brine	VVNNLDIEIEEDKVIIESGDTKISVSGILSKKHAIILVSLIITILGIKEFDIPI
Ga0314858_135993_302_469	3300033742	Sea-Ice Brine	VGVIQVDIEIEEDKVVIESGETKVQIKGILSKKHAVILVSAILAILGIKEFNIPI
Ga0314858_167364_362_514	3300033742	Sea-Ice Brine	MDIDITEEKVVIEADGSKVEIKGILSKKHAIILVSLILAILGIKEFDIPI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters