Metagenome / Metatranscriptome Family F100017

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100017
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	76 residues
Representative Sequence	MKKILKKYRMSNRDDFPTTGCHIHFLRIRAFAGEGINFTEEETAHFDVCRVCRLKVIDALRNLAPLVVCTTMRKAA
Number of Associated Samples	68
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.38 %
% of genes near scaffold ends (potentially truncated)	14.56 %
% of genes from short scaffolds (< 2000 bps)	90.29 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.427 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (20.388 % of family members)
Environment Ontology (ENVO)	Unclassified (33.010 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.689 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.54% β-sheet: 0.00% Coil/Unstructured: 63.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00072	Response_reg	6.80
PF12543	DUF3738	2.91
PF14534	DUF4440	2.91
PF03551	PadR	1.94
PF09900	DUF2127	1.94
PF04964	Flp_Fap	1.94
PF04545	Sigma70_r4	1.94
PF13432	TPR_16	0.97
PF00581	Rhodanese	0.97
PF00583	Acetyltransf_1	0.97
PF04055	Radical_SAM	0.97
PF04542	Sigma70_r2	0.97
PF13619	KTSC	0.97
PF00041	fn3	0.97
PF13620	CarboxypepD_reg	0.97
PF01435	Peptidase_M48	0.97
PF13360	PQQ_2	0.97
PF01272	GreA_GreB	0.97
PF12645	HTH_16	0.97
PF12531	DUF3731	0.97
PF07690	MFS_1	0.97
PF01476	LysM	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.94
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.94
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	1.94
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.97
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.97
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.97
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.97
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
All Organisms	root	All Organisms	47.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
cellular organisms	root	All Organisms → cellular organisms	47.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.57 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.94 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	0.97 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.91 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.97 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.97 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.97 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.97 %
Candidatus Sulfotelmatomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas	0.97 %
Undibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium	0.97 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.97 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	0.97 %
Sandaracinaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae	0.97 %
unclassified Undibacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → unclassified Undibacterium	0.97 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.97 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Undibacterium sp. YM2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → unclassified Undibacterium → Undibacterium sp. YM2	0.97 %
Sandaracinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus	0.97 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	0.97 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.97 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.43 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.68 %
Sandaracinus amylolyticus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	0.97 %
Undibacterium sp. YM2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → unclassified Undibacterium → Undibacterium sp. YM2	0.97 %
Candidatus Sulfotelmatomonas gaucii	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	0.97 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	0.97 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886011\|MRS1b_contig_5879360	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1638	Open in IMG/M
2170459014\|G1P06HT01DVEUZ	Not Available	663	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1160791	Not Available	502	Open in IMG/M
3300000559\|F14TC_100431110	All Organisms → cellular organisms → Bacteria	1849	Open in IMG/M
3300001431\|F14TB_102636681	Not Available	798	Open in IMG/M
3300003324\|soilH2_10440166	All Organisms → cellular organisms → Bacteria → Proteobacteria	1268	Open in IMG/M
3300004114\|Ga0062593_102588515	Not Available	576	Open in IMG/M
3300004114\|Ga0062593_102919887	Not Available	546	Open in IMG/M
3300004463\|Ga0063356_100362142	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300004463\|Ga0063356_102995386	Not Available	728	Open in IMG/M
3300004463\|Ga0063356_103447452	Not Available	681	Open in IMG/M
3300004643\|Ga0062591_102925997	Not Available	506	Open in IMG/M
3300005093\|Ga0062594_100350179	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300005332\|Ga0066388_100154420	Not Available	2878	Open in IMG/M
3300005332\|Ga0066388_101178149	All Organisms → cellular organisms → Bacteria → Acidobacteria	1307	Open in IMG/M
3300005332\|Ga0066388_107380988	Not Available	552	Open in IMG/M
3300005436\|Ga0070713_100846604	Not Available	878	Open in IMG/M
3300005458\|Ga0070681_11721547	Not Available	553	Open in IMG/M
3300005713\|Ga0066905_100445538	Not Available	1063	Open in IMG/M
3300005713\|Ga0066905_100931482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300005764\|Ga0066903_106110937	Not Available	630	Open in IMG/M
3300005764\|Ga0066903_107500926	Not Available	563	Open in IMG/M
3300006031\|Ga0066651_10180759	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300006049\|Ga0075417_10196403	Not Available	954	Open in IMG/M
3300006844\|Ga0075428_100543369	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatomonas → Candidatus Sulfotelmatomonas gaucii	1242	Open in IMG/M
3300006844\|Ga0075428_101082522	All Organisms → cellular organisms → Bacteria → Proteobacteria	847	Open in IMG/M
3300006847\|Ga0075431_100289460	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1657	Open in IMG/M
3300006852\|Ga0075433_10196592	All Organisms → cellular organisms → Bacteria → Acidobacteria	1794	Open in IMG/M
3300006853\|Ga0075420_100456337	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1104	Open in IMG/M
3300006854\|Ga0075425_100598350	Not Available	1268	Open in IMG/M
3300006854\|Ga0075425_101042162	Not Available	933	Open in IMG/M
3300006871\|Ga0075434_100306418	All Organisms → cellular organisms → Bacteria	1608	Open in IMG/M
3300006871\|Ga0075434_100605753	All Organisms → cellular organisms → Bacteria → Acidobacteria	1114	Open in IMG/M
3300006871\|Ga0075434_101229702	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300006903\|Ga0075426_10592988	Not Available	827	Open in IMG/M
3300006904\|Ga0075424_102011648	Not Available	610	Open in IMG/M
3300006914\|Ga0075436_101064876	Not Available	608	Open in IMG/M
3300009100\|Ga0075418_11661536	Not Available	694	Open in IMG/M
3300009147\|Ga0114129_11325057	Not Available	891	Open in IMG/M
3300009156\|Ga0111538_13946346	Not Available	513	Open in IMG/M
3300009162\|Ga0075423_10265519	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300009162\|Ga0075423_11057620	Not Available	863	Open in IMG/M
3300009162\|Ga0075423_11284595	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300009162\|Ga0075423_11899536	Not Available	643	Open in IMG/M
3300009610\|Ga0105340_1056723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1532	Open in IMG/M
3300009678\|Ga0105252_10090475	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300010047\|Ga0126382_10456179	Not Available	1015	Open in IMG/M
3300010047\|Ga0126382_11010275	Not Available	730	Open in IMG/M
3300010304\|Ga0134088_10637852	Not Available	531	Open in IMG/M
3300010358\|Ga0126370_10938187	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	785	Open in IMG/M
3300010359\|Ga0126376_10676297	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300010359\|Ga0126376_11201171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Undibacterium → unclassified Undibacterium → Undibacterium sp. YM2	773	Open in IMG/M
3300010362\|Ga0126377_10341052	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300010362\|Ga0126377_11295018	Not Available	800	Open in IMG/M
3300010362\|Ga0126377_12622179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300010366\|Ga0126379_12491218	Not Available	616	Open in IMG/M
3300010366\|Ga0126379_12971462	Not Available	567	Open in IMG/M
3300010366\|Ga0126379_13198382	Not Available	548	Open in IMG/M
3300010397\|Ga0134124_10024870	All Organisms → cellular organisms → Bacteria	4928	Open in IMG/M
3300010397\|Ga0134124_11962379	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300010398\|Ga0126383_10664538	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300010398\|Ga0126383_13224124	Not Available	533	Open in IMG/M
3300010401\|Ga0134121_10253959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1539	Open in IMG/M
3300010937\|Ga0137776_1868095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2666	Open in IMG/M
3300011403\|Ga0137313_1075669	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300011409\|Ga0137323_1044447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	977	Open in IMG/M
3300012167\|Ga0137319_1023694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1238	Open in IMG/M
3300012228\|Ga0137459_1142304	Not Available	704	Open in IMG/M
3300012948\|Ga0126375_10177008	Not Available	1375	Open in IMG/M
3300012960\|Ga0164301_11465251	Not Available	561	Open in IMG/M
3300012971\|Ga0126369_11476159	Not Available	770	Open in IMG/M
3300012971\|Ga0126369_11905780	Not Available	683	Open in IMG/M
3300012989\|Ga0164305_12087288	Not Available	519	Open in IMG/M
3300013096\|Ga0157307_1153771	Not Available	537	Open in IMG/M
3300013306\|Ga0163162_13467328	Not Available	502	Open in IMG/M
3300014326\|Ga0157380_12625656	Not Available	570	Open in IMG/M
3300015358\|Ga0134089_10481723	Not Available	541	Open in IMG/M
3300015371\|Ga0132258_10068563	All Organisms → cellular organisms → Bacteria	8216	Open in IMG/M
3300015371\|Ga0132258_10131259	All Organisms → cellular organisms → Bacteria	5975	Open in IMG/M
3300015371\|Ga0132258_10375557	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3524	Open in IMG/M
3300015371\|Ga0132258_10397623	All Organisms → cellular organisms → Bacteria	3423	Open in IMG/M
3300015371\|Ga0132258_10780798	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300015371\|Ga0132258_10911301	Not Available	2219	Open in IMG/M
3300015371\|Ga0132258_11087166	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2022	Open in IMG/M
3300015371\|Ga0132258_11169701	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300015371\|Ga0132258_11180918	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1935	Open in IMG/M
3300015371\|Ga0132258_11871937	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300015371\|Ga0132258_13316831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1108	Open in IMG/M
3300015371\|Ga0132258_13640490	All Organisms → cellular organisms → Bacteria → Acidobacteria	1053	Open in IMG/M
3300015373\|Ga0132257_103523494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	569	Open in IMG/M
3300015374\|Ga0132255_102090106	Not Available	863	Open in IMG/M
3300016294\|Ga0182041_11474036	Not Available	626	Open in IMG/M
3300018083\|Ga0184628_10258267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	915	Open in IMG/M
3300021168\|Ga0210406_10848364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300021951\|Ga0222624_1009616	Not Available	524	Open in IMG/M
3300025912\|Ga0207707_11419549	Not Available	553	Open in IMG/M
3300025921\|Ga0207652_10479502	Not Available	1120	Open in IMG/M
3300027573\|Ga0208454_1044280	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300031231\|Ga0170824_113425877	Not Available	666	Open in IMG/M
3300031716\|Ga0310813_10721181	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300031716\|Ga0310813_11696894	Not Available	592	Open in IMG/M
3300032261\|Ga0306920_102980450	Not Available	640	Open in IMG/M
3300034090\|Ga0326723_0235131	Not Available	815	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.22%
Host-Associated	Host-Associated	39.81%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.51%
Plants	Host-Associated → Plants	39.81%
Aquatic	Environmental → Aquatic	9.71%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.45%
Sediment	Environmental → Aquatic → Sediment	7.77%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.97%
Peat	Environmental → Terrestrial → Peat	0.97%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	21.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	14.56%
Loam	Environmental → Terrestrial → Soil → Loam	12.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.77%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.97%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	21.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	14.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.53%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	13.59%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.91%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Sediment	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886011	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010937	Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MRS1b_0340.00002890	2162886011	Miscanthus Rhizosphere	MKKCRLNNRVDFPRPGNHIPLLRILEFASDSMAFTEKEDAHFDVCRVCRLKVIEKLKNLVAPVPAVCGTVCGTAMRKAA
2PV_04388290	2170459014	Switchgrass, Maize And Mischanthus Litter	IARDDFSITERHIHFLSIHAFVSEGVDFTEEENAHFDACRHCRLKVIDAIRSLPPLVVPTITTKAA
ICChiseqgaiiDRAFT_11607912	3300000033	Soil	MKKILTKYRTSNRDDSRMPGRHIHFLRIRAFASEGIIFTEEENAHFDVCRVCRLTVIDALRNLPLVVCSAMSKAA*
F14TC_1004311103	3300000559	Soil	MKILKKHRVMSNRDDFPMAGRHIHFLRIRAFASEGINFTEKENVHFDVCRVCRLKVIDALRNLAPLLVCTNIPKAA*
F14TB_1026366811	3300001431	Soil	MKILKKHRVMSNRDGFPMAGRHIHFLRIRAFASEGINFTEKENAHFDVCSVCRLKLVDALRNLAPXXXCTNIPKAA*
soilH2_104401662	3300003324	Sugarcane Root And Bulk Soil	MKKILNKDPLSKGDDFPRTGRHIQLLRILAFASESINFTEDENAHFDACRDCRLKVIDALRNLTGVAPAGSPEEDVKYR*
Ga0062593_1025885152	3300004114	Soil	MKKILTKYRTSNRDDSPMPERHIHFLRIRAFASEGIIFTEEENAHFDVCRVCRLTVIDALRNLPLVVCSAMSKAA*
Ga0062593_1029198871	3300004114	Soil	MKKLLKKHGVTGNRVDFPKTGRHIHFLRILAFASEGINFTEKEDAHFDICRSCRLKVIVALRNLSPLVAPITTMAKAA*
Ga0063356_1003621423	3300004463	Arabidopsis Thaliana Rhizosphere	MKKCRLNNRVDFPRPGNHIPLLRILEFASDGMAFTEKEDAHFDVCRVCRLKVIEKLKNLAAPVPAVCGTVCGTAMRKAA*
Ga0063356_1029953861	3300004463	Arabidopsis Thaliana Rhizosphere	MKKILTKYRTSNRDDSPMPGRHIHFLRIRAFASEGIIFTEEENAHFDVCRVCRLTVIDALRNLPLVVCSAMSKAA*
Ga0063356_1034474521	3300004463	Arabidopsis Thaliana Rhizosphere	MNKLLKRDRVMGNRDEVPMIERHIHSLRVRAFASEGIDFTEIEDAHFDECRLCRLRVIDALRNLETMVAA
Ga0062591_1029259972	3300004643	Soil	MKKCRLNNRVDFPRPGNHIPLLRILEFASDSMAFTEKEDAHFDVCRVCRLKVIEKLKNLVAPVPAVCGTVCGTAMRKAA*
Ga0062594_1003501791	3300005093	Soil	MKKCRLNNRVDFPRPGNHIPLLRILEFASDGMAFTEKEDAHFDVCRVCRLKVIEKLKNLTAPVPAVCGTVCGTAMRKAA*
Ga0066388_1001544204	3300005332	Tropical Forest Soil	MKNLLTKYHAMSNRDDVPVTGPHIHALRIRAFAIEGINFTEKENAHFDVCGVCRFAVLDALRNLAPLVVQIAMRKAA*
Ga0066388_1011781492	3300005332	Tropical Forest Soil	MNKKLKKYRIVSYRDDFPITGRHIHSLRVRAFATAGMSRFTEKENAHFDACRVCRLKVLDAIKNLMPMGVPTMPKAA*
Ga0066388_1073809881	3300005332	Tropical Forest Soil	MKKILKKYRVMSNRDDFSMTGRHIHLLRFHAFASEGSDFTGKETAHFDACRVCRLKVIDALRNLAPLMGMYPTTAKAA*
Ga0070713_1008466041	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKEILKKHRGMSNRDDFPMTGGHIHSLRIRAFANEDIEFTEKEDAHFDVCRRCRLKVIEAIRNLSPPVVRTAMPKAA*
Ga0070681_117215472	3300005458	Corn Rhizosphere	MNKILNKDRLSDEFAITGRHIHLLRILAFASESINFTEEENAHFDVCRDCRLKVINALRNLTGVVRAGSNTTMKAA*
Ga0066905_1004455381	3300005713	Tropical Forest Soil	MKKLLKKYRVMSNRDDFPLREHHIHSLRIRAFANEGINFTDKEDAHFDVCRVCRLKVLDSLRNPPPLVVCITMRKAA*
Ga0066905_1009314822	3300005713	Tropical Forest Soil	MKNLLAKYHAMSNRDDVPVTGPHIHALRIRAFAIEGINFTEKENAHFDVCGVCRFAVLDALRNLAPLVVQIAMRKAA*
Ga0066903_1061109372	3300005764	Tropical Forest Soil	MKNTLEKYHLMSTRDDFPMTGCHIHPLRIRAFASECIDFTEKENAHFDVCRVCQLKLIDAVRDVESQVVRTIMPKAA*
Ga0066903_1075009261	3300005764	Tropical Forest Soil	MKKTKKYREKSARDDFSTTGRHIHLLRIHAFVSEGVEFTEEEDAHFDVCRNCRLKVIDALRTLAPHVVG
Ga0066651_101807592	3300006031	Soil	MKKLLKKYRVLSNRDDLPMTGRHIHSLRIRAFASEGINFTDEEATHFDVCRVCRINVLHALRNLAPLVVCTTMPKAA*
Ga0075417_101964031	3300006049	Populus Rhizosphere	MKKLLKKYRVLSNRDDLPMTGRHIHSLRIRAFANEGINFTDQETTHFDVCRVCRINVLHALRNLAPLVVCTTIPKAA*
Ga0075428_1005433691	3300006844	Populus Rhizosphere	MKKILKQCRLSNRDVFPMTGSHIHLLRILEFASDGITFTEKETAHFDVCRVCRLKVIDKLRNLAPLVPAVCGTAMRKAA*
Ga0075428_1010825221	3300006844	Populus Rhizosphere	MKKILTKYRTSNRDDSAMPGRHIHFLRIRAFASEGIIFTEEENAHFDVCRVCRLTVIDALRN
Ga0075431_1002894603	3300006847	Populus Rhizosphere	MTGSHIHLLRILEFASDGITFTEKETAHFDVCRVCRLKVIDKLRNLAPLVPAVCGTAMRKAA*
Ga0075433_101965923	3300006852	Populus Rhizosphere	MKKLLKKYRVLSNRDDLPMTGRHIHSLRIRAFANEGINFTDEETTHFDVCRVCRINVLHALRNLAPLVVCTTIPKAA*
Ga0075420_1004563371	3300006853	Populus Rhizosphere	MKKILKQCRLSNRDVFPMTGSHIHLLRILEFASDGITFTKKETAHFDVCRVCRLKVIDKLRNLAAPVPAVCGTAMRKAA*
Ga0075425_1005983502	3300006854	Populus Rhizosphere	MKKILKKYRVMSTRDDFSMTGRHIYLLRIRAFASKGINFTDKENAHFDVCRVCRLKVIDALRNLALQVPTIMPKAA*
Ga0075425_1010421621	3300006854	Populus Rhizosphere	MKKILKKFRVMSTRDDFPMTGRHIHFLRIRAFASEGIDFTEKESAHFDVCHVCRLKVIDALRNLALAPG*
Ga0075434_1003064182	3300006871	Populus Rhizosphere	MKKILKKYRVMSTRDDFSMTGRHIHFLRIRAFASKGINFTDKENAHFDVCRVCRLKVIDALRNLALQVPTIMPKAA*
Ga0075434_1006057531	3300006871	Populus Rhizosphere	MKKILKKHHRSNLYDFAMRGRHIDFLRIRAFASEGINFTEEETVHFDVCRVCRLNVIDALRNLADEVPAVCGTTMRKAA*
Ga0075434_1012297022	3300006871	Populus Rhizosphere	MKKIEKSGVMSTSDDFPMTERHIHFLRIRAFSIEGIKFTEKENAHFDICRVCRLKVIDAVKNLGPQVHAIMQKAA
Ga0075426_105929881	3300006903	Populus Rhizosphere	MKKILKKYRVMSTRDDFSMTGRHIHFLRIRAFASKGINFTDKENAHFDVCRVCRLKVIDALRNLALQVPTTMPKAA*
Ga0075424_1020116481	3300006904	Populus Rhizosphere	MKKILKKHHTSNLYDFAMRGRHIDFLRIRAFASEGINFTEEETVHFDVCRVCRLNVIDALRNLADEVPAVCGTTMRKAA*
Ga0075436_1010648761	3300006914	Populus Rhizosphere	MKKILKKYRMSNRDDFPMTGRHIHFPRIRAFASEGFNFTEEEAAHFDVCCVCRLKVIDGLRTLAPLVVCTTMPKAA*
Ga0075418_116615361	3300009100	Populus Rhizosphere	MKKILKQCRLSNRDVFPMTGSHIHLLRILEFASDGITFTEKETAHFDVCRVCRLKVIDKLRNLAPLV
Ga0114129_113250572	3300009147	Populus Rhizosphere	MKKILKQCRLSNRDVFPMTGSHIHLLRILEFASDGITFTEKETAHFDVCRVCRLKVIDKLRNLEPLVPAVCGTAMRKAA*
Ga0111538_139463461	3300009156	Populus Rhizosphere	MKKIEKSGVMSTSDDFPMTERHIHFLRIRAFSIEGIKFTEKENAHFDICRVCRLKVIDAVKNLGPQVHAIMQKA
Ga0075423_102655193	3300009162	Populus Rhizosphere	MKKLLKKYRVLSNRDDLPMTGRHIHSLRIRAFANEGINFTDEETTHFDVCRVCRINVLHAPRNLAPLVVCTTMPKAA*
Ga0075423_110576201	3300009162	Populus Rhizosphere	TNWRQVMKKILKKFRVMSTRDDFPMTGRHIHFLRIRAFASEGIDFTEKESAHFDVCHVCRLKVIDALRNLALAPG*
Ga0075423_112845951	3300009162	Populus Rhizosphere	MKKILEKHRVMSNRDDFPMAGRHIHFLRIRAFASEGINFTEKENAHFDVCRVCRLKVIDGLRRLAPLVGCTTMPKAA*
Ga0075423_118995361	3300009162	Populus Rhizosphere	MKKILKKFRVMSTRDDFPMTGRHIHFLRIRAFAGEGINFTEKESAHFDVCRVCRLKVIDALRNLVPGVVRTIMPKAA*
Ga0105340_10567233	3300009610	Soil	MNKLLKKYRVMSNRDDSPMTGGHIHSLRIRAFASEGINFTEKETAHFDVCRVCRLKVRDALRNLAPRPTMSKAA*
Ga0105252_100904752	3300009678	Soil	MKKILTKNRTSNRLDFPMPERHIQFLRILAFASEGIDFTEEEDAHFDVCRVCRLKVIDALRNRTPLVVCTNMSKAA*
Ga0126382_104561791	3300010047	Tropical Forest Soil	MNKKLKKYRIVSYRDDFPITGRHIHSLRVRAFATAGMSRFTEKENAHFDACRVCRLKVLDALKNLTPVGVPTMPKAA*
Ga0126382_110102751	3300010047	Tropical Forest Soil	MKKLLKKYRVMSNRDDFPLREHHIHSLRIRAFANEGINFTDKEDAHFDVCRACRLKVLDSLRNLPPLVVCITMRKAA*
Ga0134088_106378521	3300010304	Grasslands Soil	MKKILKKYRMSNRDDFPTTGCHIHFLRIRAFAGEGINFTEEETAHFDVCRVCRLKVIDALRNLAPLVVCTTMRKAA*
Ga0126370_109381871	3300010358	Tropical Forest Soil	MKEILKKYRVMGNDDDLPLTGPHIHSRRIHAFASEGIDFTEKENAHFDACRVCRLNVIDALRNLAPLVGVICVYPAMPKAA*
Ga0126376_106762972	3300010359	Tropical Forest Soil	MKKILKNYRMSNRDDFPMTGRHIHLLRIRAFASDGINFTEKETAHFDVCRVCRLRVLDALRNLAPQVVRTITPKAA*
Ga0126376_112011711	3300010359	Tropical Forest Soil	VMLKKYRMSNRDDFPMAGRHIHFLRIRAFVSEGIDFTEEETAHFDECFPCRLKVVDALRNLASGGPPVCDTTKEKAA*
Ga0126377_103410522	3300010362	Tropical Forest Soil	MKKILKKHRVVSNRDDFPMAGRHIHFLRIRAFASEGINFTEEENAHFDVCRVCRLKVIDALRTLAPLVVCTTMSKAA*
Ga0126377_112950181	3300010362	Tropical Forest Soil	MKKILKKCRVMSSRDDFPMTGRHIHFLRIRAFASEEINFTEKETDHFDVCRVCRLKVIDALRNLAPQFVCTIMLKAA*
Ga0126377_126221791	3300010362	Tropical Forest Soil	HAMSNRDDVPVTGPHIHALRIRAFAIEGINFTEKENAHFDVCGVCRFAVLDALRNLAPLVVQIAMRKAA*
Ga0126379_124912181	3300010366	Tropical Forest Soil	MSNRDDLPLTGPHIHSLRIHAFAIEGIDFTEKENAHFDACRVCRLNVIDALRNLAPLVGVICVYPAMPKAA*
Ga0126379_129714621	3300010366	Tropical Forest Soil	MKKILKKHHVMSNRDDFPMTGRHIHSLRILAFATERINFTEKESAHLDVCRLCRLKVIDALRNVASLAALVGA*
Ga0126379_131983822	3300010366	Tropical Forest Soil	MKKILKKYRVMSTPADLPMTGSHIHFLRIRAFASEGINFTERETAHFDVCRVCRLKVIDALRNPAPQVIRTIIPKCA*
Ga0134124_100248704	3300010397	Terrestrial Soil	MKNVRRELRVVSTRDDFPMTAAHIDFLRICAFAREGIDFTKKESAHFDVCRECRLKVIDALRNLEPQEVRTIMPMAA*
Ga0134124_119623792	3300010397	Terrestrial Soil	LNNRVDFPRPGNHIPLLRILEFASDSMAFTEKEDAHFDVCRVCRLKVIEKLKNLVAPVPAVCGTVCGTAMRKAA*
Ga0126383_106645381	3300010398	Tropical Forest Soil	MEKILKKYRMINRDDFPMTGRHIHILRIRAFADEGINFTEEETAHFDVCRDCRLEVIDALKKLADPIPSICGITMGKAA*
Ga0126383_132241241	3300010398	Tropical Forest Soil	MKKILKKYRMSNRDDFPMTGRHIHLLRIRAFASDGINFTEKETAHFDVCRVCRLKVLDALRNLAPQVVRTITPKAA*
Ga0134121_102539591	3300010401	Terrestrial Soil	MKKILKKFRVMSIREDFPMTGHHIHFPRIRAFASEGINFTEKESDHFDVCRRCRLKVIDAIRNPWRPRS*
Ga0137776_18680953	3300010937	Sediment	MKKNKQYREESARDDFATSGRHLDLLRIHAFVSEGIDFTEEENAHFDVCRNCRLTVIDALRTLAPQVCTITTKAA*
Ga0137313_10756691	3300011403	Soil	MKKILTKNRTSNRLDFPMPERHIQFLRILAFASEGIDFTEEEDAHFDVCRVCRLKVIDALRNRTPM
Ga0137323_10444471	3300011409	Soil	MKKLLKEFRVVSNRDDFPMTERHIHSLRIRDFASEKINFTGKEAVHFDVCRVCRLKVIDALRNLTPLVVSTTMSKAA*
Ga0137319_10236942	3300012167	Soil	MKKILTKSRTSNRVDFPMPERHIQFLRILAFASEGIDFTEEEDAHFDVCRVCRLKVIDALRNRTPLVVSTNMSKAA*
Ga0137459_11423042	3300012228	Soil	MNKPLKKYRVMSNRDDFLMAGRHIHSLRIRAFASEGINFTEKETAHFDVCRVCRLKVRDALRNLAPRPTMSKAA*
Ga0126375_101770082	3300012948	Tropical Forest Soil	MKKILKKYRMSNRDDFPMTGRHIHFLRIVAFASEGINFTEEEDAHFDVCRACRVKVIDALRKLPALVPAVCGTTMRKVA*
Ga0164301_114652511	3300012960	Soil	MVNGSFNRRQVMKKILKKFRVMSTCDNFPTRRHIHSLRIRAFASEGINFTEKETAHFDACRVCRVKVLDALRNLGLMVVYITMPKAA*
Ga0126369_114761591	3300012971	Tropical Forest Soil	MKKTLKKYRMINRDDFPVTGFHIHVLRIRAFANEGINFTEEEDSHFDVCRDCRLEVIDALKKLADPLPSVSGTTMGKAA*
Ga0126369_119057801	3300012971	Tropical Forest Soil	MKNTNKYREKSARDDFSTTGRHIHLLRIHAFVSEGVDFTEEEDAHFDVCRNCRLKVIDALRTLAPQVVLTITKKAA*
Ga0164305_120872881	3300012989	Soil	MKKILKKYRKSNRDNFAMTGRHIHFLRIGAFASEGINFNEEETAHFDACRICRLEVIHALKNLADGFPIDCDTTMPKAA*
Ga0157307_11537711	3300013096	Soil	KKLLKKYRVMSNRDDLPMTERHIHSLRIRGFASERINFTEREAGHFDVCRICRLKVLNELKNRARLIVRTSMPKAV*
Ga0163162_134673281	3300013306	Switchgrass Rhizosphere	MKKCRLNNRVDFPRPGNHIPLLRILEFASDGMAFTEKEDAHFDVCRVCRIKVIEKLKNLVAPVPAVCGTVCGTAMRKAA*
Ga0157380_126256562	3300014326	Switchgrass Rhizosphere	MNKRLEQNRVISNRDHFSVTGPHIHSLRIRAFASEGINFTEEENSHFDVCRVCRLKVLDALRNLGLLIVPTTMSKAA*
Ga0134089_104817231	3300015358	Grasslands Soil	MKKILKKHRVMSNRDDFPMAVRHIHFLRIRAFASEGINFTEKESAHFDVCRLCRLKVIDALRNLAPGVVRTIMPKAA*
Ga0132258_100685633	3300015371	Arabidopsis Rhizosphere	MNKTLKEYPVVSTRDDFPVAGRHIHFLRILAFANESVNFTDKEDAHFDDCRICRLKVIHTLRSLAPRPVRIVVAKAA*
Ga0132258_101312592	3300015371	Arabidopsis Rhizosphere	MKKILKKYRAMSTRDDFLLTGFHIRFLRICAFANESIDFTKEENAHFEDCRLCRLKVIHALRNLAQLDVPATMTKAA*
Ga0132258_103755573	3300015371	Arabidopsis Rhizosphere	MKEILKKHRGMSNRDDFPMTGGHIHSLRIRAFANEDIEFTEKEDAHFDVCRFCRLKVIEAIRDLPPPVVRTTMPKAA*
Ga0132258_103976234	3300015371	Arabidopsis Rhizosphere	MKEILKKHRVMSDSDDFPMAGRHIRSLRILAFASEGIHFTDRETAHFDVCRVCRLKVIDALRKLPPLVVGTATAKAA*
Ga0132258_107807982	3300015371	Arabidopsis Rhizosphere	MKKCRLSNRVDFPRPGNHIPLLRILEFASDGMAFTEKEDAHFDVCRVCRLKVIEKLKNLTAPVPAVCGTVCGTAMRKAA*
Ga0132258_109113012	3300015371	Arabidopsis Rhizosphere	MKRLLKEYRVVSNRDDFPMTERHIHPLRIRDFASEKINLTGKEAVHFDVCRFCRFKVRNALRNRMPKAA*
Ga0132258_110871662	3300015371	Arabidopsis Rhizosphere	MKKLLKKSRAMSNRHDFPMAGPHIHSLRIRAFAIESIDFTEKEDAHFDACRVCRLDLLDALRNLAPLVVQITMRKAA*
Ga0132258_111697013	3300015371	Arabidopsis Rhizosphere	MKKILKKFRVMSTHDDSPITGRHIHFLRIRSFASEGINFTEKENAHFDLCRSCRLKVIDALRNLAPRVVRTLAS*
Ga0132258_111809183	3300015371	Arabidopsis Rhizosphere	MKKIEKSGVMSTSDDFPMTERHIHFLRIRAFSIEGIKFTEKENAHFDICRVCRLKVIDAVKNLGPQVHAIMQKAA*
Ga0132258_118719372	3300015371	Arabidopsis Rhizosphere	MKKLLKKYRVLSNGDDLPMTGRHIHSLRIRAFASEGINFTDEETTHFDVCRVCRINVLHALRNLAPLVVCTTMPKAA*
Ga0132258_133168311	3300015371	Arabidopsis Rhizosphere	MKKLLKKYRVMSNRGHFPMTERHIHSLRIRAFASERINFTEKEAGHFDACRICRLNVLNALKNRARLIIRTSMPKAV*
Ga0132258_136404902	3300015371	Arabidopsis Rhizosphere	MNKLLKNHRVMSNRDDSPMTGRHIHSLRIRAFASVSEGINFTEKENAHIDVCRVCRLKLVDALRNAPTTTMPKAA*
Ga0132257_1035234941	3300015373	Arabidopsis Rhizosphere	MKKIEKSGVMSTSDDFPMTERHIHFLRIRAFSIEGIKFTEKENAHFDICRVCRLKV
Ga0132255_1020901061	3300015374	Arabidopsis Rhizosphere	MNKLHKKYRVIGNGDDFPMTGPHIHSLRIRAFASEGVNFTEEEDAHFDACRLCRLEMIEALKNLTPVVVTTTVSKAA*
Ga0182041_114740362	3300016294	Soil	MKKILKKHHVMSNRDDFPMTGRHIHSLRIHAFASEGIHFTEKETTHFDVCRACRLKVIDALRNWASLVGTYSTNAEGCLNTGSD
Ga0184628_102582673	3300018083	Groundwater Sediment	MNKQLKKYRLMSDRDDFPRTERHIHSKRIRAFASDGINFTEKEDAHFDVCRVCRLKVVDALRKHLAPLVVSTTMSKAA
Ga0210406_108483642	3300021168	Soil	MKKILKKYRGMSNRDDFPMTGRHIHSLRIRAFANEDIEFTEKEDAHFDVCRPCRLKVIDAIRNLPPPVVRTTMPKAA
Ga0222624_10096161	3300021951	Groundwater Sediment	MNKRLKKRRVKSNRDDFPMTGRHIHSQRIRAFASASEGINFTEKENAHFDVCSVCRLKLVDALRNVSTTIKPKAA
Ga0207707_114195491	3300025912	Corn Rhizosphere	MNKILNKDRLSDEFAITGRHIHLLRILAFASESINFTEEENAHFDVCRDCRLKVINALRNLTGVVRAGSNTTMKAA
Ga0207652_104795022	3300025921	Corn Rhizosphere	MNKILNKDRLSDEFAITGRHIHLLRILAFASESINFTEEENAHFDVCRDCRLKVINALRNLTG
Ga0208454_10442801	3300027573	Soil	MKKILTKNRTSNRLDFPMPERHIQFLRILAFASEGIDFTEEEDAHFDVCRVCRLKVIDALRNRTPLVVCTNMSKAA
Ga0170824_1134258772	3300031231	Forest Soil	MKKILKKYRKSNRDHFAMTGGHIHFLRIGAFASEGINFNEEETAHFDVCRVCRLEVIHALKNLADGVPFDCDSTMPKAA
Ga0310813_107211811	3300031716	Soil	MKSILKRFRVMSTPDDVPMTGDHIDFLRISAFAGECINFTEKENAHFDLCRFCRLGLIDALNNLSQAERGIMAKAA
Ga0310813_116968941	3300031716	Soil	MKEILKKHRGMSNRDDFPMTGGHIHSLRIRAFANEDIEFTEKEDAHFDVCRLCRLKVIEAIRNQSPPVVRTAMPKAA
Ga0306920_1029804502	3300032261	Soil	MKKILKKHHVMSNRDDFPMTGRHHIHSLRIRAFATEDINFTEKETAHLEVCRACRLKVIDALRKRASLEGTYSTMQKVP
Ga0326723_0235131_592_795	3300034090	Peat Soil	MSNPHDFSMEERHIHSMRIRAFASESINFTEKEAAHFDVCRVCRLKVHDALRNPAPLIVRARMRKTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100017

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences