NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F100164

Metagenome / Metatranscriptome Family F100164

Go to section:
Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100164
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 86 residues
Representative Sequence LQPCLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Number of Associated Samples 71
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 11.00 %
% of genes near scaffold ends (potentially truncated) 62.75 %
% of genes from short scaffolds (< 2000 bps) 98.04 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (99.020 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(71.569 % of family members)
Environment Ontology (ENVO) Unclassified
(94.118 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(89.216 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.
1Ga0105137_1075871
2Ga0105137_1078811
3Ga0105136_1099301
4Ga0105135_1091612
5Ga0105131_1048612
6Ga0105132_1036103
7Ga0105132_1056592
8Ga0105132_1237462
9Ga0105120_10043602
10Ga0105120_10115901
11Ga0105120_10335262
12Ga0105126_10203771
13Ga0105126_10496951
14Ga0105139_11020961
15Ga0134126_123664552
16Ga0134124_111950221
17Ga0134123_106435321
18Ga0182183_10238621
19Ga0182102_10369891
20Ga0182099_10219451
21Ga0182099_10501251
22Ga0182100_10439651
23Ga0182100_10762722
24Ga0182101_10823361
25Ga0182105_10742911
26Ga0182103_10210411
27Ga0182103_10654712
28Ga0182103_10742351
29Ga0182098_10839052
30Ga0182098_11029321
31Ga0182162_11160551
32Ga0182182_10606491
33Ga0182164_10641711
34Ga0182120_11210212
35Ga0182130_11020482
36Ga0182148_10745302
37Ga0182166_11397471
38Ga0182153_10794682
39Ga0182153_11038212
40Ga0182152_10691951
41Ga0182152_11340451
42Ga0182131_10127301
43Ga0182131_10875101
44Ga0182131_10949922
45Ga0182131_11484811
46Ga0182117_11472081
47Ga0182132_10455311
48Ga0182132_10997301
49Ga0182132_11336301
50Ga0182132_11558881
51Ga0182116_10186562
52Ga0182116_10313971
53Ga0182116_11065232
54Ga0182151_11500611
55Ga0182137_10293823
56Ga0182137_11583911
57Ga0182137_11612261
58Ga0182137_11785332
59Ga0182149_10445441
60Ga0182133_10665031
61Ga0182133_11607331
62Ga0182115_10933481
63Ga0182115_11005341
64Ga0182115_12412141
65Ga0182163_12322741
66Ga0182163_12703381
67Ga0182163_12717382
68Ga0182169_12296312
69Ga0182179_10850621
70Ga0182179_12222241
71Ga0182167_12061241
72Ga0182167_12709751
73Ga0182199_10863091
74Ga0182195_11224741
75Ga0182213_10809572
76Ga0182201_11270081
77Ga0182196_10502622
78Ga0182200_11211701
79Ga0182214_10841551
80Ga0182198_11650211
81Ga0182215_11722941
82Ga0182210_10650811
83Ga0182211_11803621
84Ga0182178_10226431
85Ga0182119_1065002
86Ga0207650_109371361
87Ga0207644_105497451
88Ga0207641_123066712
89Ga0268338_10080401
90Ga0268332_10493131
91Ga0268303_1065171
92Ga0268308_10342271
93Ga0268315_10155251
94Ga0268329_10129342
95Ga0268305_1021231
96Ga0268335_10013522
97Ga0268311_10099391
98Ga0214482_10554431
99Ga0214499_10756402
100Ga0214494_10501802
101Ga0314743_10646991
102Ga0314749_11323081
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 56.25%    β-sheet: 0.00%    Coil/Unstructured: 43.75%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

1020304050607080LQPCLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIQDFESequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
99.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Terrestrial Soil
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Switchgrass Phyllosphere
Phyllosphere
Switchgrass Associated
2.9%71.6%8.8%13.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0105137_10758713300009972Switchgrass AssociatedDYRRNKISPDEPPLQPRLTIFGVRPPARVEDCQDKSEMRALSNELTKAHMANIRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105137_10788113300009972Switchgrass AssociatedMTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPLARAEDYQDKSEIRKLSNEHTKAHMGNVRLDTSQQRLREEVREMQEDLDLYFKFLD
Ga0105136_10993013300009973Switchgrass AssociatedISHDYWRNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVTLDTSQQRLREEVREMQEDLDLYFMFLDERMDRLVEALGIQDFE*
Ga0105135_10916123300009980Switchgrass AssociatedVTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPPARDEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105131_10486123300009989Switchgrass AssociatedVTKEGRIISHDYRRNKISPDEPPLQPRLTIFGLRPPARSEDYHDKSEIKKLSNELTKAHMANARLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105132_10361033300009990Switchgrass AssociatedVGPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDHLAKALGIQNFE*
Ga0105132_10565923300009990Switchgrass AssociatedVTKEGRIISHDYRRNKISPDEPSLQPRLTIFGVRPPARVEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDHLVEALGIHDFE*
Ga0105132_12374623300009990Switchgrass AssociatedGRIISHDYRRNKISPDEPPLQPCLTIFGVRPPARVEDCQDKSKMRALSNELTKAHMANIRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105120_100436023300009992Switchgrass AssociatedVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDHLAKALGIQNFE*
Ga0105120_101159013300009992Switchgrass AssociatedMKEGRIISHDYRRNKISPDEPPLQPRLTIFGVISPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105120_103352623300009992Switchgrass AssociatedVRPPARAEDHQDMTEMRKLSNEFTKAHLANVRLDTSQQRLMTEIKEMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0105126_102037713300009994Switchgrass AssociatedKISPDELPLQPRLTIFGVRPLARAEDYQDKSEIRKLSNEHTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0105126_104969513300009994Switchgrass AssociatedVRPTARAEAHQDKTEIRKLSNELTKAHMANVRLDTSQQGLRKEIREMQEDLNLYFKFLDERMDRLVEALGIQDFE*
Ga0105139_110209613300009995Switchgrass AssociatedVTKEGRIISHDYRRNKISLDEPPLQPRLTIFGVRPPARIEDYQDKSEIRKHSNELTKAHMANVSLDTSQQRLREEVREMQEDLNLYFKFLDERMDRLVKALGIQNFE*
Ga0134126_1236645523300010396Terrestrial SoilMDNKKEGLLISHDYRRNKISPDDPPLQPRLTIFVVRPPARSEDYKDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0134124_1119502213300010397Terrestrial SoilCIPNEAPLQPRLTIFGVRPPAKAKDHQDKTEMRKLSNELTKAHLDNVRLDTSQQRLRTEIREMQEDLDLYFKFLDERMDLLVEALGIQDFE*
Ga0134123_1064353213300010403Terrestrial SoilVKPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0182183_102386213300015270Switchgrass PhyllosphereAEDYQDKTEMRTLSNELTKAHMANVRLVTSQQRLRTEIREMQEDLDLYFKFLDEWMDRLVEALGIQDFE*
Ga0182102_103698913300015273Switchgrass PhyllospherePLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLATSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182099_102194513300015278Switchgrass PhyllosphereYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDHLAKALGIQNFE*
Ga0182099_105012513300015278Switchgrass PhyllosphereVTKEGRIISHDYRRNKISPDEPPLQPCLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182100_104396513300015280Switchgrass PhyllosphereVRPPARAEDHQDKTEMRKLSNELTKAHLDNVRLDTSQQRLRTEIKEMQEDLDLYFKFLDERMDRLVEVLGIQDFE*
Ga0182100_107627223300015280Switchgrass PhyllosphereLTIFGVRPPARAEDHQDKTEMRTLSNELTKAHMANVRLDTSQQGLRKEIREMQEDLNLYFKFLDEWMDRLVEALGIQDF*
Ga0182101_108233613300015284Switchgrass PhyllospherePLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182105_107429113300015290Switchgrass PhyllosphereEPPHQPRLTIFGVRPPARPKDYQDKFEIKKLSNELTKAQMANVRLDTSQQRLREEIKEMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182103_102104113300015293Switchgrass PhyllosphereHDYRCNKISPDEPPLQPHLTIFGMRPPARAEDYQDKSEMRVLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0182103_106547123300015293Switchgrass PhyllospherePPLQPRLTIFGVRPPARAEDCQDKSEMWALSNELTKAHMANIRLDTSQQRLRKEVREMQGDLDIYLEFLDERMDRLAKALGIQNFE*
Ga0182103_107423513300015293Switchgrass PhyllosphereIFGVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLTEEVREMQGDLDLYFMFLDERMDHLVEALGIQDFE*
Ga0182098_108390523300015309Switchgrass PhyllosphereVRPPARAEDYQDKTEIRKLSKELTKAHMANVRLDTSQQRLRMEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182098_110293213300015309Switchgrass PhyllosphereGVRPPARAEDYQDKSEIRKLSNELTKAHMAIVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDHLVEALGIQDFE*
Ga0182162_111605513300015310Switchgrass PhyllosphereRNKISPDEPPLQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMATVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLAKALGIQNFE*
Ga0182182_106064913300015311Switchgrass PhyllosphereVRPPARAKDHQDKTEMRKLSNELTKAHLANVRLDTSQQRLRTEIRQMQEDLDLYFKFLDE
Ga0182164_106417113300015313Switchgrass PhyllosphereMTKEGQIISHDYRRNKISPDELPLQPRLTIFGVRPPARVEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDE
Ga0182120_112102123300015315Switchgrass PhyllosphereVRPPARAKDHQDKTEMRKLSNELTKAHLANVRLDTSQQRLRTEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182130_110204823300015319Switchgrass PhyllosphereVRPPARAEDHQDKTEMRTLSNELTKAHMANVRLDTSQQGLRKEIREMQEDLNLYFKFLDERMDRLVEALGIQDFE*
Ga0182148_107453023300015325Switchgrass PhyllosphereEDYQNKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNIE*
Ga0182166_113974713300015326Switchgrass PhyllosphereYQDKSEIKKLFNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDHLVEALGIQDFE*
Ga0182153_107946823300015328Switchgrass PhyllosphereMRALSNELAKAHMANIRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRRVEALGMQD
Ga0182153_110382123300015328Switchgrass PhyllosphereVRPPARAEDHQDQTEMRKLSNELIKAHMANVRLDTSQQRLRLEIREMQEDLDLYFKFLDERMDRLVEALGIQDFEQGS*
Ga0182152_106919513300015330Switchgrass PhyllosphereGQIISHDYRRNEISPDEPLLQPCLTIFGVRPPARAEDCQDKSEMRALSYELTKAHMADIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKELGIQNFE*
Ga0182152_113404513300015330Switchgrass PhyllospherePRLTIFGVRLPARVEDYQDKSEVRKLSNELTKSHMANVRLDTSQQMLRTEIKETQEDLNLYFKFLDERMDRLVEALGIQDFE*
Ga0182131_101273013300015331Switchgrass PhyllosphereVRPPARAEDYQDNSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0182131_108751013300015331Switchgrass PhyllosphereQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDCLVEALGIQDFE*
Ga0182131_109499223300015331Switchgrass PhyllosphereVTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPPDRAEDYQDKTEIKKLSNELTKAHMANVRLDTSQQRLRTEVREMQEDLDLYFKFLDERMDHLVEALGIHDP*
Ga0182131_114848113300015331Switchgrass PhyllosphereVTKEGRIISHNYRRNKISPDEPPLQPRLTIFGVRPPARAEDYQDKTEIRKLSNELTNTHMANVRLDTSQQRLRTKVREMQEDLDLYFKFLDERMDRLVKALGIQNFE*
Ga0182117_114720813300015332Switchgrass PhyllosphereSPDEPPLQPRLTIFGVRPPARAEDHQDKSEIRKLSNELTKAHMANVSLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVETLGIQDIE*
Ga0182132_104553113300015334Switchgrass PhyllosphereVTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEMKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182132_109973013300015334Switchgrass PhyllosphereVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE*
Ga0182132_113363013300015334Switchgrass PhyllosphereRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQHRLREEVREMQGDLDLYFKFLDERMDRLVEALGILDKTPLVIIGLVGR*
Ga0182132_115588813300015334Switchgrass PhyllosphereMRSTCIPDEAPLQPRLTIFGVRPPARVEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLRMEVREMQEDLDLYFKFLDER
Ga0182116_101865623300015335Switchgrass PhyllosphereQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182116_103139713300015335Switchgrass PhyllosphereVRPPARADDHLDKTEIRKLSNELIKAHMANVRLDKSQQRLRTDIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182116_110652323300015335Switchgrass PhyllosphereYRRNKISPDEPPLQPRLPIFGVRPLAKAEDYQGKTEMGKFSNELTKAHMANTRLNTSQRRLRTEIREMQEDLDLYMEYLDDKMDRLVKALGIQDFE*
Ga0182151_115006113300015337Switchgrass PhyllosphereMSPDEPPLQPRLTIFGVRPPARAEDHQDQTEMRKLSNELIKAHMANVRLDTSQQRLRLEIREMQEDLDLYFKFLDERMDRL
Ga0182137_102938233300015338Switchgrass PhyllosphereVRPPARAEDHQDKTEIRKLSNELTKAHMANVRLDTSQQGLRKEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182137_115839113300015338Switchgrass PhyllosphereEGRIISHDYRRNKISPNEPPLQPRLTIFAVRPPAKAEDQKDKTEMGKLTSELTKAHKTNARLKTSQQRLRTDMGEMQEDLDLYFRILDDKMDHLVKALGIQDFE*
Ga0182137_116122613300015338Switchgrass PhyllosphereVRPPARADDHLDKTEIRKLSNELIKAHMANVRLDKSQQRLRTEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182137_117853323300015338Switchgrass PhyllosphereVRPPARAEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDHLEEALGIQDFE*
Ga0182149_104454413300015339Switchgrass PhyllosphereVRPPAKAEDHQDKTVMGKFSSELTKAHMANVILDTSQQRLRTEIKEMQEDLDLYFRFLDDKMDRLVKTLGIQDFE*
Ga0182133_106650313300015340Switchgrass PhyllosphereHDYRHNKISPDEPPLQPRLTIFGVRPLAREEDHQDKTKMRTLSNELKKAHMANVRLDTSHQRLRTEIREMQEDLDLYFKFLDEWMDRLVQALGIQDF*
Ga0182133_116073313300015340Switchgrass PhyllosphereKEGRIISHDYRCNKISPNEPPLQPRLTIFGVRPRAKAEDHHDKIEMRKLSNELTKAHMANVRLDTFQQRLRTEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE*
Ga0182115_109334813300015348Switchgrass PhyllosphereVTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLV
Ga0182115_110053413300015348Switchgrass PhyllospherePRLTIFGVRPPARAEDYQDKTEIRKLSNELTNTHMANVRLDTSQQRLRTEVSEMQEDVDLYFKFLDERVDRLIEALGIQNLE*
Ga0182115_124121413300015348Switchgrass PhyllosphereVRPPARAEDNQDKTKIRKLSNELTKAHMANIRLDTSQQRLRTEIREMQEDLDLYFKFLDERMDLLVEALGIQDFE*
Ga0182163_123227413300015350Switchgrass PhyllosphereFGVRPPARAEDYQDKSEIKKLSNEFTKAHMAGIRLDTSQQWLREEVREMQGDLDLYLKFLDERMDRPAKALEIQNFE*
Ga0182163_127033813300015350Switchgrass PhyllosphereTIFGVRPPARAEDYQDKTEIRKLSNELTNTHMANVRLDTSQQRLRTEIREMQEDLDLYFMFLDERVDHLIEALGIQNLE*
Ga0182163_127173823300015350Switchgrass PhyllosphereVRPPARVDDHLDKTEIRKLSNELTKAHMANVRLDTSQQRLRTEIKEMQEDLDLYFKFLDERMNHLVEALGIQDFE*
Ga0182169_122963123300015352Switchgrass PhyllosphereMHSWVTKEGRVISHDYRRNKISPEEPPLQPCLTIFGVRPPARAEDHQDKTEIKKLSNELTKAHMANVRLDTSQQRLRIEIREMQEDLDLYFKFLDETMDRVVEALG
Ga0182179_108506213300015353Switchgrass PhyllosphereVTKEGRIISHDYRHNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREVQGDLDLYFKFLDEMMDRLVEALGIQDFE*
Ga0182179_122222413300015353Switchgrass PhyllosphereVRPPARAEDNQDKTKIRKLSNELTKAHMANVRLDTSQQGLRIEVREMQEDLDLYFKFLDERMDHLVEALGIQYFE*
Ga0182167_120612413300015354Switchgrass PhyllospherePPLQPRLTIFGVRPPARAEDYQDKTEIRKLSNELTNTHMANVRLDTSQQRLRTKVREMQEDLDLYFKFLDERMDRLIEALGIQNFE*
Ga0182167_127097513300015354Switchgrass PhyllosphereVTKEGRIISHDYRRNKISPDEPPLQPCLTIFGVRPLARAEDYQDKSKISKLSNELTKAHMTNVRLDTSQQRLREEVRELQEDLDLYFKFLDERMDRLVEALGIQD
Ga0182199_108630913300017412Switchgrass PhyllosphereARAEDYQDKSEIRKLSNEITKAHMANVRLDTSQQRLREEVREMQGDLDLYLEFLDERMDHLAKALGIQNFEKGS
Ga0182195_112247413300017414Switchgrass PhyllosphereSEIRKLSNELTKAHMAGIRLDTSQQRLREVVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0182213_108095723300017421Switchgrass PhyllosphereLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKTHMANTRLDTSQQRLREEVREMQGDLDLYFKFLDERMDCLVEALGIQDFE
Ga0182201_112700813300017422Switchgrass PhyllosphereISPDEPLLQPHLTIFGVRPPARVADHQDKTEIRKLSNEVTKAHIANVRLDTSQQRLRKEIREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Ga0182196_105026223300017432Switchgrass PhyllosphereMSPDEPPLHPCLTIFGVRPPARAEDYQDKSEIKKLSNELTKDQMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE
Ga0182200_112117013300017439Switchgrass PhyllosphereVRLQYVNWRFKKRQHRRNKISPDEPPFQPRLTIFGVRPPARAEDYQDKSEMRVLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Ga0182214_108415513300017440Switchgrass PhyllospherePARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRVVEALGIQDFE
Ga0182198_116502113300017445Switchgrass PhyllosphereEDHQDKTEIRKLSNELTKANMANVRVDTSQQRLRTEIREMQEDLDLYFKFLDEKMDRLVEALGIKDFE
Ga0182215_117229413300017447Switchgrass PhyllosphereIISHDYRRNKISPDEPPLQPRLTIFGVRPSARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE
Ga0182210_106508113300017692Switchgrass PhyllosphereMSPDEPPLHPRLTIFGVRPPARAEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLRTEVREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Ga0182211_118036213300017694Switchgrass PhyllosphereNKTEIKKLSNELTKTHMANVRLDTSQQRLRMEVREMQEDLDLYFKFLDERMDRLVEALGIHDFE
Ga0182178_102264313300020023Switchgrass PhyllosphereDYWRNKISPDELPLQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0182119_10650023300020031Switchgrass PhyllospherePHLRIFGVRPPARAEDHQDKTEIRKLSNELTKAHMANVRLDTSQQGLRKEIREMQEDLNLYFKFLDERMDRLVEALGIQDFEQGS
Ga0207650_1093713613300025925Switchgrass RhizospherePARVEDCQDKSEMRALSNELTKAHMANIRLDTSQQRLREEVREMQGDLDLYFKFLDERIDRLVEALGIQDFE
Ga0207644_1054974513300025931Switchgrass RhizosphereSPDELPLQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0207641_1230667123300026088Switchgrass RhizosphereIISHDYWRNKISPDELPLQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0268338_100804013300028055PhyllospherePDELPLQPRLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0268332_104931313300028058PhyllospherePPARVEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREVQGDLDLYFKFLDEMMDRLVEALGIQDFE
Ga0268303_10651713300028147PhyllosphereNKISPDEPPLQPRLTIFGVRPPARPEDYQDKFEIKNLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE
Ga0268308_103422713300028151PhyllosphereLQPCLTIFGVRPPARAEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Ga0268315_101552513300028472PhyllosphereKEGRIISHDYRRNKISPNEPPLQPRLTIFGVRPLARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIHDFE
Ga0268329_101293423300028476PhyllosphereVRPPAKAEDHQDKTEMRKLSSELTKAHMANVRLDTSQQRFRTEIREMQEDLDLYFKFLDEWMDRLVEALGIQDFE
Ga0268305_10212313300028525PhyllosphereDFRRNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFKFLDERMDRLVEALGIQDFE
Ga0268335_100135223300028527PhyllosphereMTKEGRIISHDYRRNKISPDEPPLQPRLTIFGVRPPARPEDYQDKSEIKKLSNELTKAHMANVRLDTSQQRLREEVREMQGDLDLYFK
Ga0268311_100993913300028529PhyllosphereVRPPARAEDYQDKSEMRVLSNELTKAHMANVRLDTFQQRVREEVRELQGDLDLYLEFLDERMDRLAKALGIQDFE
Ga0214482_105544313300032468Switchgrass PhyllosphereVRPPARAEDCQDKSEMRALSYELSKAHMANIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQTFE
Ga0214499_107564023300032697Switchgrass PhyllosphereVRPPARVEDYQDKSEIRKLSNELTKAHMANVRLDTSQQRLREEVREMQEDLDLYFKFLDERMDRLVEALGIQDFE
Ga0214494_105018023300032699Switchgrass PhyllosphereLLARAEDYQDKSEIRKLSNELTKAHMAGIRLDTSQQRLREEVREMQGDLNLYLEFLDERMDRLAKALGIQNFE
Ga0314743_106469913300032844Switchgrass PhyllosphereGVRPPARAEDCQDKSEMRALSYELTKAHMANIRLDTSQQRLRKEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE
Ga0314749_113230813300032915Switchgrass PhyllosphereRAEDCQDKSKMRALSYELTKAHMANIRLDTSQQRLREEVREMQGDLDLYLEFLDERMDRLAKALGIQNFE


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.