NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100243

Metagenome / Metatranscriptome Family F100243

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100243
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 37 residues
Representative Sequence LKASREILVPRADVVSDSVLARKCVPPHGTAVVGGKW
Number of Associated Samples 72
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Eukaryota
% of genes with valid RBS motifs 72.55 %
% of genes near scaffold ends (potentially truncated) 42.16 %
% of genes from short scaffolds (< 2000 bps) 95.10 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Eukaryota (67.647 % of family members)
NCBI Taxonomy ID 2759
Taxonomy All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(68.627 % of family members)
Environment Ontology (ENVO) Unclassified
(85.294 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(74.510 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF03732Retrotrans_gag 0.98
PF00665rve 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.98
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.98
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.98
COG4584TransposaseMobilome: prophages, transposons [X] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms67.65 %
UnclassifiedrootN/A32.35 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005719|Ga0068861_100456024All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1147Open in IMG/M
3300009177|Ga0105248_10610702All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1230Open in IMG/M
3300009972|Ga0105137_102561All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum765Open in IMG/M
3300009973|Ga0105136_103727All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum800Open in IMG/M
3300009973|Ga0105136_107855All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum629Open in IMG/M
3300009981|Ga0105133_114328Not Available644Open in IMG/M
3300009981|Ga0105133_116472All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum619Open in IMG/M
3300009981|Ga0105133_125034Not Available547Open in IMG/M
3300009987|Ga0105030_117956All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum635Open in IMG/M
3300009989|Ga0105131_138216Not Available530Open in IMG/M
3300009989|Ga0105131_140828All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum517Open in IMG/M
3300009990|Ga0105132_119530All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum658Open in IMG/M
3300010371|Ga0134125_11887645All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum649Open in IMG/M
3300010396|Ga0134126_12828610All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum526Open in IMG/M
3300010396|Ga0134126_12951472All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum514Open in IMG/M
3300010399|Ga0134127_13370216All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum523Open in IMG/M
3300010403|Ga0134123_10651930All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1021Open in IMG/M
3300012949|Ga0153798_10212798Not Available684Open in IMG/M
3300013306|Ga0163162_12660895Not Available576Open in IMG/M
3300013306|Ga0163162_13270931Not Available519Open in IMG/M
3300014325|Ga0163163_11823207All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum669Open in IMG/M
3300014326|Ga0157380_10920019Not Available902Open in IMG/M
3300015270|Ga0182183_1086443All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum519Open in IMG/M
3300015280|Ga0182100_1009067Not Available1059Open in IMG/M
3300015280|Ga0182100_1019932Not Available848Open in IMG/M
3300015290|Ga0182105_1008986Not Available1095Open in IMG/M
3300015290|Ga0182105_1068245All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum594Open in IMG/M
3300015293|Ga0182103_1081123All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum548Open in IMG/M
3300015297|Ga0182104_1053341All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum671Open in IMG/M
3300015297|Ga0182104_1088985All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum563Open in IMG/M
3300015301|Ga0182184_1047144All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum653Open in IMG/M
3300015309|Ga0182098_1038133All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum760Open in IMG/M
3300015309|Ga0182098_1116485Not Available521Open in IMG/M
3300015311|Ga0182182_1078356All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum592Open in IMG/M
3300015312|Ga0182168_1032765All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum844Open in IMG/M
3300015312|Ga0182168_1058078All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum696Open in IMG/M
3300015313|Ga0182164_1119051All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum532Open in IMG/M
3300015315|Ga0182120_1009102All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1247Open in IMG/M
3300015315|Ga0182120_1082472Not Available617Open in IMG/M
3300015316|Ga0182121_1123335All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum540Open in IMG/M
3300015318|Ga0182181_1080522Not Available572Open in IMG/M
3300015319|Ga0182130_1092841Not Available583Open in IMG/M
3300015327|Ga0182114_1094009Not Available630Open in IMG/M
3300015328|Ga0182153_1113832All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum566Open in IMG/M
3300015330|Ga0182152_1063688Not Available710Open in IMG/M
3300015331|Ga0182131_1075423Not Available670Open in IMG/M
3300015331|Ga0182131_1145480Not Available517Open in IMG/M
3300015332|Ga0182117_1125668All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum573Open in IMG/M
3300015332|Ga0182117_1141862All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum544Open in IMG/M
3300015336|Ga0182150_1023145All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1021Open in IMG/M
3300015336|Ga0182150_1162332All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum508Open in IMG/M
3300015338|Ga0182137_1154816Not Available536Open in IMG/M
3300015338|Ga0182137_1172899Not Available510Open in IMG/M
3300015340|Ga0182133_1151281Not Available559Open in IMG/M
3300015340|Ga0182133_1168736All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum532Open in IMG/M
3300015340|Ga0182133_1175397All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum523Open in IMG/M
3300015348|Ga0182115_1001542All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum3307Open in IMG/M
3300015349|Ga0182185_1151807All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum690Open in IMG/M
3300015350|Ga0182163_1086808Not Available936Open in IMG/M
3300015350|Ga0182163_1143340Not Available741Open in IMG/M
3300015350|Ga0182163_1233786All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum576Open in IMG/M
3300015350|Ga0182163_1280054Not Available522Open in IMG/M
3300015350|Ga0182163_1288252All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum514Open in IMG/M
3300015352|Ga0182169_1211780All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum633Open in IMG/M
3300015353|Ga0182179_1180765Not Available666Open in IMG/M
3300015353|Ga0182179_1239643Not Available583Open in IMG/M
3300015353|Ga0182179_1288304Not Available533Open in IMG/M
3300015354|Ga0182167_1285594Not Available588Open in IMG/M
3300017408|Ga0182197_1078329All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum647Open in IMG/M
3300017412|Ga0182199_1034777All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum965Open in IMG/M
3300017412|Ga0182199_1091591All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum687Open in IMG/M
3300017412|Ga0182199_1118379All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum624Open in IMG/M
3300017414|Ga0182195_1089131All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum722Open in IMG/M
3300017421|Ga0182213_1073646All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum939Open in IMG/M
3300017421|Ga0182213_1143434Not Available671Open in IMG/M
3300017422|Ga0182201_1127726All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum525Open in IMG/M
3300017445|Ga0182198_1189590All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum517Open in IMG/M
3300017447|Ga0182215_1080805All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum712Open in IMG/M
3300017447|Ga0182215_1107370All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum625Open in IMG/M
3300017693|Ga0182216_1105485All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum679Open in IMG/M
3300017792|Ga0163161_11213244All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum653Open in IMG/M
3300020031|Ga0182119_101146All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum861Open in IMG/M
3300022465|Ga0213505_104054All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1204Open in IMG/M
3300025918|Ga0207662_11230438All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum532Open in IMG/M
3300025931|Ga0207644_11551883All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum556Open in IMG/M
3300025972|Ga0207668_10962623All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum762Open in IMG/M
3300028050|Ga0268328_1060342Not Available537Open in IMG/M
3300028058|Ga0268332_1078983Not Available503Open in IMG/M
3300028253|Ga0268316_1015341All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum585Open in IMG/M
3300028253|Ga0268316_1016050All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum577Open in IMG/M
3300028256|Ga0268304_1015189Not Available510Open in IMG/M
3300028262|Ga0268310_1020900Not Available682Open in IMG/M
3300032464|Ga0214492_1000483All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum3736Open in IMG/M
3300032464|Ga0214492_1021876All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1191Open in IMG/M
3300032591|Ga0214484_1005259All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum2040Open in IMG/M
3300032697|Ga0214499_1218494All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum589Open in IMG/M
3300032699|Ga0214494_1000856All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum3186Open in IMG/M
3300032759|Ga0314720_1011178All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Dichantheliinae → Dichanthelium → Dichanthelium oligosanthes1080Open in IMG/M
3300032812|Ga0314745_1001777All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae2975Open in IMG/M
3300032822|Ga0314740_1004177All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae1754Open in IMG/M
3300032827|Ga0314730_104583All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum miliaceum1392Open in IMG/M
3300032918|Ga0314726_115862All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Dichantheliinae → Dichanthelium → Dichanthelium oligosanthes852Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere68.63%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated8.82%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere5.88%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil4.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.94%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.96%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.98%
Switchgrass DegradingEngineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009972Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_224 metaGHost-AssociatedOpen in IMG/M
3300009973Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009987Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_213 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300012949Switchgrass enrichment cultures co-assemblyEngineeredOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015330Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015332Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017412Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017447Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017693Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300020031Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_31MAY2016_LD2 MGHost-AssociatedOpen in IMG/M
3300022465Metatranscriptome of phyllosphere microbial comminities from switchgrass, Michigan, USA - G5R1_MAIN_12JUL2016_LR1 MT pilot (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028050Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028058Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028253Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028256Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_15MAY2017_LD1Host-AssociatedOpen in IMG/M
3300028262Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300032464Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032591Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032697Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032699Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032759Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_15MAY2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032812Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032822Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_17JUL2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032827Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M
3300032918Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068861_10045602413300005719Switchgrass RhizosphereLKASREILVPRADVVSDSVLARKCVPPHGTAVVGGKW*
Ga0105248_1061070213300009177Switchgrass RhizosphereLKASREILVPRADMVSDSVLARKCVPPHGTAVVGGKW*
Ga0105137_10256113300009972Switchgrass AssociatedLKASREILVLRADVVSDSVLARKCVPPHGTVVVGGKW*
Ga0105136_10372713300009973Switchgrass AssociatedLKASREILVPRADVVSDSVLDRKCVPPHGTAVVGGKW*
Ga0105136_10785513300009973Switchgrass AssociatedLKVSREILVPRADVVSDSVLARKCVPPHGTAVVGGKW*
Ga0105133_11432813300009981Switchgrass AssociatedLLKPSREILVSRADVVSDSVLPRKCVPPHGTPVVGGKW*
Ga0105133_11647213300009981Switchgrass AssociatedLKASIEILVPRADTVSDSVLARKCVPPHGTTVVGGRW*
Ga0105133_12503413300009981Switchgrass AssociatedASREILVSRANVVSDSVLARKCVPPHGTVVVGGKW*
Ga0105030_11795613300009987Switchgrass RhizosphereLKASREILVPRANVVSDSVLARKCVPPHGTTVVGGKW*
Ga0105131_13821613300009989Switchgrass AssociatedSREILVPRADVVSDSVLARKCVPPHGTAVVGGKW*
Ga0105131_14082813300009989Switchgrass AssociatedLKASREILVPRADVVPDSVLARKCVPPHGTTVVGGK
Ga0105132_11953013300009990Switchgrass AssociatedLKASREILVPRADVVSDLVLARKCVPPYGTAVVGGKW*
Ga0134125_1188764513300010371Terrestrial SoilLKASREILVSRADVVSDSVLARKCVPPHGTAVVGGSGDSLVRPS*
Ga0134126_1282861013300010396Terrestrial SoilLKASREILVPRADVVSDTVLARKCVPPHGTAVVGGKW*
Ga0134126_1295147213300010396Terrestrial SoilLKASREIQVLRADVVSDSVLARKCVPPHDTAVVGGK
Ga0134127_1337021613300010399Terrestrial SoilLKASREILVPRADVVSDLVLARKCVPPYGAVVVGGKW*
Ga0134123_1065193013300010403Terrestrial SoilLKASREILVPRADVVSDSVLARKCVPPRGTAVVGGKW*
Ga0153798_1021279823300012949Switchgrass DegradingGFLLKASKEILVPRANVVSDSVPARKCVPPHGTIVVGGKW*
Ga0163162_1266089513300013306Switchgrass RhizosphereLKASSEILVPRADMVSDSVLARKCVPPHGTAVVGGKW
Ga0163162_1327093113300013306Switchgrass RhizosphereLKASREILVPRADVVPDSVLARKYVPPHGTAMVGGKW*
Ga0163163_1182320713300014325Switchgrass RhizosphereLKVSREILVSRADVVSDSVLARKCVPPHGTAVVGGKW*
Ga0157380_1092001923300014326Switchgrass RhizosphereLKASREILVSRADVVSDSVLARKCVPPHGTAVVGGK
Ga0182183_108644313300015270Switchgrass PhyllosphereLKASREILVLRADVVSDSVLARKCVPPHGTAVVGGKW*
Ga0182100_100906713300015280Switchgrass PhyllosphereLKALRDILVPRADVVSDSMLARKCVPPYGTAVVGDKW*
Ga0182100_101993213300015280Switchgrass PhyllosphereLKASTEILVPRADVMSNSMLARKFVPHHGTTVVGGKW*
Ga0182105_100898613300015290Switchgrass PhyllosphereLKASREILVPRADMVSDSMLARKCVPPHGTAVVGDEW*
Ga0182105_106824513300015290Switchgrass PhyllosphereLKASREILVPRADVVSDLVLARKCVPPHDTAVVGGKW*
Ga0182103_108112313300015293Switchgrass PhyllosphereLKESREILALRADVVSDLVLAKKCLPPYGTAVVVDNW*
Ga0182104_105334113300015297Switchgrass PhyllosphereLKASREILVPRADVVSDLVLARKCVPPHGTAVVGGKW*
Ga0182104_108898513300015297Switchgrass PhyllosphereLKASREILVPRADMVSDSVLSGRCVPPHGTVVVGG
Ga0182184_104714413300015301Switchgrass PhyllosphereLKASIEILVPRADVVSDSVLARKCVPLYGTAVVGGKW*
Ga0182098_103813313300015309Switchgrass PhyllosphereLKASRGILVPRADVVSDSVLARKCVPPHGTAVVVGKW*
Ga0182098_111648513300015309Switchgrass PhyllosphereLKASREILVTRANVVSILVLARKCIPLHDITVVVGKW*
Ga0182182_107835613300015311Switchgrass PhyllosphereLKASIEILVPRADVASDSVLARKCVPLYGTAVVGGKW*
Ga0182168_103276513300015312Switchgrass PhyllosphereLKASREILVLRADVVSDSVLARKCVSSHSITVVVGKW*
Ga0182168_105807813300015312Switchgrass PhyllosphereLKVSREILVPREDVVSDLVLARKCVPPHGTPVVGGKW*
Ga0182164_111905113300015313Switchgrass PhyllosphereLKASKEILLPRADMVSDSVLARKCVPPHGTTVVGGKW
Ga0182120_100910223300015315Switchgrass PhyllosphereLKASREILVPIADVVSDSVLARKCVPPHGAAVVGGK
Ga0182120_108247223300015315Switchgrass PhyllosphereLLKASREILVLRADVMSDSVLARKCVPPHGTVVVGSMW*
Ga0182121_112333513300015316Switchgrass PhyllosphereLKASREILVPRADVVSDSVLARKCVPPHGTTVVGGKW*
Ga0182181_108052213300015318Switchgrass PhyllosphereLKALREILVPRADAVSDSVLARKFVPSHGTAVVGGKR*
Ga0182130_109284113300015319Switchgrass PhyllosphereKASREILVSSADVVSDLVLARECVPPHGTVVVGGRW*
Ga0182114_109400913300015327Switchgrass PhyllosphereASIEILVPRADIVSDSVLARKCVPPHGTTVVGGKW*
Ga0182153_111383213300015328Switchgrass PhyllosphereLKASRDILVPRAAVVPDSVLARKCVPPHGTAVVVGKW*
Ga0182152_106368813300015330Switchgrass PhyllosphereLKASREILVPRADVMSDSVLARKYVPPHGTAVVGSKW*
Ga0182131_107542313300015331Switchgrass PhyllosphereRPLREILIPRVDEVSDSVLSRKCVPPHGNAVVGVNW*
Ga0182131_114548013300015331Switchgrass PhyllosphereSREILVPRADVVSDSVLARKCVPPHGTAVVGDKW*
Ga0182117_112566813300015332Switchgrass PhyllosphereLKATREILVPRADMVSDSVIARKCVPPHGTAMVGGKW*
Ga0182117_114186213300015332Switchgrass PhyllosphereLKASREILVPRTDVVSDSVLARKCVPPHGTAVVGGKW*
Ga0182150_102314513300015336Switchgrass PhyllosphereLKASREILVPRVDVVSDSVLARKCVTPHGTTVVGGKW*
Ga0182150_116233213300015336Switchgrass PhyllosphereLKALREILVLRADVVSDLVLARKCVPPHGTAVVGGKW
Ga0182137_115481613300015338Switchgrass PhyllosphereVEGPSREILVPSANVVSDLVLARKCVPPHGTAVVVSKW*
Ga0182137_117289913300015338Switchgrass PhyllosphereASREILVSRADVVSDSVLARKCVPPHGIIVVGGKW*
Ga0182133_115128113300015340Switchgrass PhyllosphereFLLKASREILVPRADVASNSVLARKCVPPHSTAVVGGKW*
Ga0182133_116873613300015340Switchgrass PhyllosphereLKASREILVPRADVVSESVLARKCVPPHGTVVVGGKW
Ga0182133_117539713300015340Switchgrass PhyllosphereLKASREILVLRADVVSDSVLARKSVPPHGTAVVGGKW*
Ga0182115_100154233300015348Switchgrass PhyllosphereLKASREILVSRTDVVSNSVLARKCVPPHSTAVGGGKW*
Ga0182185_115180713300015349Switchgrass PhyllosphereLKVSREILVPRADVVSDSMLAIKCVPTHDTTVVGGKW*
Ga0182163_108680813300015350Switchgrass PhyllosphereASREILTPRLDVVSNLVLARKCVPPHVTVVVVGKW*
Ga0182163_114334013300015350Switchgrass PhyllosphereLKASREILVPRADVVFDSVLARKYVPPHGTAVVVGKW*
Ga0182163_123378613300015350Switchgrass PhyllosphereLKVSREILVSRADVVSDSVLARKCVPPHGIAAVGGKW*
Ga0182163_128005413300015350Switchgrass PhyllosphereFLLKASREILALRVDVVSDLVLAKKCLPPHGTAVVVDNW*
Ga0182163_128825213300015350Switchgrass PhyllosphereLKASREILVSRTDVVSDSVLARKSVPPHGTAVVGGKW*
Ga0182169_121178013300015352Switchgrass PhyllosphereLKASREILVPSADMVSDLVLDRKCVLPHGTAVVVGKC
Ga0182179_118076513300015353Switchgrass PhyllosphereLKASREILVSRADVVSDSVLARKCVPTHGTAVVGG*
Ga0182179_123964323300015353Switchgrass PhyllosphereLLKASREILVPRADVVSDSVLAKKCVTPHGTAVVVCKW*
Ga0182179_128830413300015353Switchgrass PhyllosphereSREILVPRADMVSDSFLARKCVPPHGTTVVGGKW*
Ga0182167_128559413300015354Switchgrass PhyllosphereLKATREILTLCAYMVSSLALSRKCVPPHGTVVVGN
Ga0182197_107832913300017408Switchgrass PhyllosphereLKASREILVSRADVVSDSVLARKCVPPHGIIVVGGK
Ga0182199_103477713300017412Switchgrass PhyllosphereLKASREILVPRADVVSDSVLARKCVPPHGTVVVGGKW
Ga0182199_109159113300017412Switchgrass PhyllosphereLKASREILVLRANVVSDSVLARKCVPPHGTAVVGGKWR
Ga0182199_111837913300017412Switchgrass PhyllosphereLNASREILVPSVDVVSDLVLARKCVPPHGTTVVVGKW
Ga0182195_108913113300017414Switchgrass PhyllosphereKASREILVPRADVVSDSVLARKCVPPHSTAVVGGKW
Ga0182213_107364613300017421Switchgrass PhyllosphereLKASREILVPRVDMVSDSVLARKCVPPHGTAVVGGKW
Ga0182213_114343413300017421Switchgrass PhyllosphereGGFLLKASREILVSRADVVSDLVQARKCVPPHVTAVVGGKW
Ga0182201_112772613300017422Switchgrass PhyllosphereGGFLLKASREILIPRVDVVPDSVLARKCVPPHGTAVVGGKW
Ga0182198_118959013300017445Switchgrass PhyllosphereLKASREILVLRANVVSDSVLARKCVPPHGTVVVGGKW
Ga0182215_108080513300017447Switchgrass PhyllosphereLKGSIEILVSRADMVSDSILARKCVPPHGTAVVGG
Ga0182215_110737013300017447Switchgrass PhyllosphereLKASREILVLRADVVSDLVLARKCVPPHNTTVLGGKW
Ga0182216_110548513300017693Switchgrass PhyllosphereLKASREILVLRADVVSDSVLARKSVPPHGTAVVGGKW
Ga0163161_1121324413300017792Switchgrass RhizosphereLKASREILVSRADVVSDSVLARKCVSPHGNAVVGGKW
Ga0182119_10114613300020031Switchgrass PhyllosphereLKASREILVPRADVVSDSVLARKCVPPHGTAVVGGKW
Ga0213505_10405413300022465Switchgrass PhyllosphereLKASIEILVPRADTVSDSVLARKCVPPHGTAVVGGKW
Ga0207662_1123043813300025918Switchgrass RhizosphereLKASREILVPRIAVVSGSVLARKCVPPHGTTVVGGKW
Ga0207644_1155188313300025931Switchgrass RhizosphereLKASREILVPREDVVSDSVLARKCVPPHGTAVAGGK
Ga0207668_1096262313300025972Switchgrass RhizosphereLKASREILVPRADVVSDSVIARKYVPPHGTAVVGGKW
Ga0268328_106034213300028050PhyllosphereMKASREILVPRADVMSDSVLTRKCVPLHGTVVVGGKW
Ga0268332_107898313300028058PhyllosphereASREILILRADVVSDSVLARKCVPPHGTAVVGGKW
Ga0268316_101534113300028253PhyllosphereLKASREILVSRADVVFDSVLARKCVPPHGTAVEGGKW
Ga0268316_101605013300028253PhyllosphereLKASREILILRVDVVSDSVLARKCVPPHGTVVVGGKW
Ga0268304_101518913300028256PhyllosphereLKASREILVSRADMVSDSVLVRKCVPPHGTAVVGGSGDS
Ga0268310_102090013300028262PhyllosphereLKASREILVSRADVVSDSVLARKCVPPHGTAVVGGKW
Ga0214492_100048313300032464Switchgrass PhyllosphereLKASIEILVPRADTVSDSVLARKCVPPHGTTVVGGKW
Ga0214492_102187613300032464Switchgrass PhyllosphereLKASKEILVPRADVVSDSVLARKCVPPHGTAVVGGKW
Ga0214484_100525913300032591Switchgrass PhyllosphereLKASKEILVPRADVVSDSVLARKCVPPHGTVVVGGKW
Ga0214499_121849413300032697Switchgrass PhyllosphereLKASREILVPRADVMSDSVLTRKCVPLHGTIVVGGKW
Ga0214494_100085653300032699Switchgrass PhyllosphereGRLRGFLLKASREIIVSRADVVSGSVLARKCVPPHGTVVVGGKW
Ga0314720_101117833300032759Switchgrass PhyllosphereSFGRLRGFLLKASREIIVSRADVVSGSVLARKCVPPHGTVVVGGKW
Ga0314745_100177743300032812Switchgrass PhyllosphereLKASREIIVSRADVVSGSVLARKCVPPHGTVVVGGK
Ga0314740_100417713300032822Switchgrass PhyllosphereLKASREIIVSRADVVSGSVLARKCVPPHGTVVVGGKW
Ga0314730_10458313300032827Switchgrass PhyllosphereLKASIEILVPRADVVSDSVLARKCVPPHGTAVVGGKW
Ga0314726_11586213300032918Switchgrass PhyllosphereGFLLKASREIIVSRADVVSGSVLARKCVPPHGTVVVGGKW


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